Wall clock time and date at job start Tue Mar 31 2020 15:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46714 * 2 1 4 4 C 1.50702 * 109.46793 * 240.00559 * 2 1 3 5 5 H 1.07998 * 120.00103 * 245.52273 * 4 2 1 6 6 C 1.37881 * 120.00328 * 65.52714 * 4 2 1 7 7 N 1.31518 * 119.99481 * 9.65766 * 6 4 2 8 8 Si 1.86799 * 120.00117 * 189.65347 * 6 4 2 9 9 H 1.48505 * 109.46966 * 84.99574 * 8 6 4 10 10 H 1.48498 * 109.47090 * 204.99260 * 8 6 4 11 11 H 1.48501 * 109.47098 * 324.99256 * 8 6 4 12 12 N 1.46895 * 109.47391 * 120.00283 * 2 1 3 13 13 C 1.46907 * 110.99669 * 58.95388 * 12 2 1 14 14 C 1.46892 * 111.00175 * 295.00320 * 12 2 1 15 15 N 1.46498 * 109.47231 * 205.00040 * 14 12 2 16 16 C 1.33873 * 122.76419 * 90.02102 * 15 14 12 17 17 O 1.21227 * 125.39956 * 0.02562 * 16 15 14 18 18 C 1.51322 * 109.20871 * 180.02562 * 16 15 14 19 19 C 1.54228 * 103.55084 * 0.02562 * 18 16 15 20 20 C 1.53001 * 110.60446 * 118.67383 * 19 18 16 21 21 C 1.50707 * 110.60481 * 241.48262 * 19 18 16 22 22 C 1.38231 * 120.00128 * 65.19553 * 21 19 18 23 23 C 1.38237 * 120.00047 * 179.74886 * 22 21 19 24 24 C 1.38236 * 119.99770 * 0.52273 * 23 22 21 25 25 C 1.38236 * 120.00189 * 359.75481 * 24 23 22 26 26 C 1.38236 * 119.99840 * 245.46713 * 21 19 18 27 27 C 1.33879 * 122.76231 * 269.73129 * 15 14 12 28 28 O 1.21236 * 125.39132 * 359.97438 * 27 15 14 29 29 H 1.08998 * 109.47306 * 60.83531 * 1 2 3 30 30 H 1.09003 * 109.47028 * 180.83412 * 1 2 3 31 31 H 1.09001 * 109.46836 * 300.83514 * 1 2 3 32 32 H 0.97005 * 119.99116 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.46930 * 60.00006 * 13 12 2 34 34 H 1.09000 * 109.46885 * 180.02562 * 13 12 2 35 35 H 1.09000 * 109.46981 * 300.00134 * 13 12 2 36 36 H 1.09006 * 109.47048 * 324.99481 * 14 12 2 37 37 H 1.09000 * 109.47722 * 84.99328 * 14 12 2 38 38 H 1.09000 * 110.60258 * 118.51641 * 18 16 15 39 39 H 1.08997 * 110.60459 * 241.48704 * 18 16 15 40 40 H 1.08996 * 109.47076 * 60.00076 * 20 19 18 41 41 H 1.09005 * 109.46897 * 179.97438 * 20 19 18 42 42 H 1.09000 * 109.47211 * 299.99289 * 20 19 18 43 43 H 1.07998 * 119.99964 * 359.97438 * 22 21 19 44 44 H 1.07993 * 119.99846 * 180.29652 * 23 22 21 45 45 H 1.08003 * 119.99683 * 179.77139 * 24 23 22 46 46 H 1.07992 * 120.00411 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.00068 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5776 -1.6375 -1.1341 6 6 1.7957 -0.1765 -2.4796 7 7 1.3035 1.0378 -2.5932 8 14 2.1744 -1.1778 -4.0104 9 1 1.0201 -2.0579 -4.3243 10 1 2.4232 -0.2616 -5.1522 11 1 3.3809 -2.0101 -3.7715 12 7 2.0198 -0.6925 1.1993 13 6 1.5284 -2.0762 1.2457 14 6 1.6488 0.0390 2.4180 15 7 2.5926 -0.2874 3.4898 16 6 3.7149 0.4102 3.7043 17 8 4.0794 1.3696 3.0592 18 6 4.4564 -0.1886 4.8796 19 6 3.5587 -1.3661 5.3113 20 6 4.3114 -2.6920 5.1835 21 6 3.0691 -1.1700 6.7231 22 6 2.2229 -0.1184 7.0213 23 6 1.7696 0.0584 8.3153 24 6 2.1713 -0.8100 9.3130 25 6 3.0221 -1.8582 9.0159 26 6 3.4707 -2.0384 7.7208 27 6 2.4010 -1.3045 4.3391 28 8 1.4520 -2.0590 4.3283 29 1 -0.3634 0.5008 -0.8974 30 1 -0.3633 -1.0276 0.0150 31 1 -0.3633 0.5268 0.8824 32 1 1.1367 1.4132 -3.4720 33 1 1.8763 -2.6150 0.3645 34 1 1.9054 -2.5657 2.1437 35 1 0.4385 -2.0743 1.2637 36 1 1.6786 1.1108 2.2216 37 1 0.6416 -0.2470 2.7211 38 1 5.4380 -0.5481 4.5710 39 1 4.5491 0.5392 5.6858 40 1 5.1960 -2.6705 5.8200 41 1 3.6612 -3.5102 5.4931 42 1 4.6133 -2.8399 4.1466 43 1 1.9130 0.5628 6.2428 44 1 1.1047 0.8771 8.5473 45 1 1.8201 -0.6697 10.3247 46 1 3.3355 -2.5369 9.7952 47 1 4.1357 -2.8571 7.4887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763326738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:57 Heat of formation + Delta-G solvation = -40.990644 kcal Electronic energy + Delta-G solvation = -29207.848268 eV Core-core repulsion = 25355.499009 eV Total energy + Delta-G solvation = -3852.349259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.30902 -40.27536 -39.60820 -38.89777 -37.06025 -35.80941 -34.46785 -31.97779 -31.32205 -30.56862 -29.38199 -28.14390 -27.24117 -26.10068 -25.25113 -23.82457 -23.21061 -22.01071 -21.30759 -20.26201 -18.63411 -18.46813 -18.04796 -17.62122 -17.15051 -16.85020 -16.19429 -16.12853 -15.89459 -15.76396 -15.47592 -15.26700 -15.04800 -14.88043 -14.60251 -14.44441 -14.28219 -14.02123 -13.66171 -13.37328 -13.33438 -13.04565 -13.00903 -12.84900 -12.77101 -12.70920 -12.61975 -12.45070 -12.17581 -11.98118 -11.91668 -11.79086 -11.55856 -11.21742 -11.02686 -10.89414 -10.51122 -9.81787 -9.67959 -9.17918 -8.18875 -6.26082 0.32655 0.44993 0.51973 1.39317 1.41009 1.42416 1.51517 1.71303 2.40117 2.73745 3.04168 3.12105 3.13659 3.28500 3.40530 3.54059 3.84316 3.87553 4.09789 4.13510 4.16980 4.29144 4.32260 4.47944 4.51592 4.60549 4.60746 4.61306 4.65392 4.69737 4.73551 4.79937 4.87389 4.94651 5.01765 5.04926 5.15174 5.20596 5.35272 5.53238 5.57606 5.59730 5.64038 5.64863 5.78931 6.01705 6.09493 6.27084 6.31659 6.48105 6.72922 6.83675 7.41136 8.90869 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.002971 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.675604 B = 9423.392972 C = 9488.454614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.222 3.778 3 H 0.011 0.989 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.553 5.553 13 C 0.046 3.954 14 C 0.268 3.732 15 N -0.567 5.567 16 C 0.524 3.476 17 O -0.516 6.516 18 C -0.132 4.132 19 C -0.042 4.042 20 C -0.135 4.135 21 C -0.079 4.079 22 C -0.134 4.134 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.105 4.105 27 C 0.536 3.464 28 O -0.503 6.503 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.023 0.977 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.133 0.867 45 H 0.145 0.855 46 H 0.152 0.848 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -6.603 26.245 27.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.115 3.885 3 H 0.029 0.971 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.278 5.278 13 C -0.102 4.102 14 C 0.057 3.943 15 N -0.310 5.310 16 C 0.315 3.685 17 O -0.389 6.389 18 C -0.171 4.171 19 C -0.046 4.046 20 C -0.192 4.192 21 C -0.079 4.079 22 C -0.152 4.152 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.123 4.123 27 C 0.325 3.675 28 O -0.375 6.375 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.171 0.829 39 H 0.160 0.840 40 H 0.134 0.866 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.151 0.849 45 H 0.163 0.837 46 H 0.170 0.830 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.031 -6.359 25.697 27.151 hybrid contribution -1.334 0.271 -1.603 2.103 sum 4.697 -6.088 24.094 25.291 Atomic orbital electron populations 1.22201 0.99768 0.99615 0.99695 1.19053 0.90088 0.93156 0.86153 0.97114 1.21281 1.35659 1.08183 0.90748 0.92309 1.25706 0.95231 0.95553 1.01940 1.70090 1.46064 1.15175 1.24587 0.85544 0.78743 0.78552 0.78662 1.19761 1.20989 1.19404 1.61922 1.60701 1.03204 1.01952 1.22210 0.97368 0.89396 1.01240 1.21924 0.89989 0.98570 0.83856 1.47088 1.23898 1.30539 1.29452 1.21538 0.80121 0.81472 0.85385 1.90774 1.68925 1.26868 1.52359 1.22850 1.00759 0.97603 0.95879 1.20376 0.92584 0.99879 0.91730 1.21926 1.01162 0.92065 1.04016 1.19229 0.99406 0.96962 0.92310 1.21062 0.98543 0.98062 0.97540 1.21321 1.00109 1.00398 0.92540 1.21543 0.97415 0.94781 1.00053 1.21544 0.97098 0.98098 0.96914 1.21405 0.99944 0.98708 0.92242 1.21211 0.87507 0.77849 0.80888 1.90712 1.33328 1.41744 1.71727 0.93207 0.93863 0.95156 0.92798 0.91787 0.92367 0.95899 0.89797 0.91587 0.82936 0.84040 0.86551 0.90702 0.91840 0.88158 0.84917 0.83732 0.83041 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.47 8.42 71.98 0.61 -6.86 16 2 C 0.22 11.69 2.14 44.17 0.09 11.79 16 3 H 0.01 0.65 7.87 -2.38 -0.02 0.64 16 4 C -0.52 -29.32 7.97 25.60 0.20 -29.12 16 5 H 0.06 3.30 6.56 -2.91 -0.02 3.28 16 6 C 0.02 0.84 5.19 84.66 0.44 1.28 16 7 N -0.92 -54.31 12.17 21.45 0.26 -54.05 16 8 Si 0.96 44.42 29.55 68.60 2.03 46.45 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 N -0.55 -25.14 4.84 -913.84 -4.42 -29.56 16 13 C 0.05 1.91 8.61 127.69 1.10 3.01 16 14 C 0.27 10.67 4.42 170.81 0.76 11.42 16 15 N -0.57 -18.83 2.77 -767.02 -2.13 -20.95 16 16 C 0.52 16.30 8.08 88.00 0.71 17.01 16 17 O -0.52 -20.56 17.48 -2.87 -0.05 -20.61 16 18 C -0.13 -2.44 6.16 30.46 0.19 -2.25 16 19 C -0.04 -0.82 0.91 -53.06 -0.05 -0.87 16 20 C -0.13 -1.89 7.11 71.98 0.51 -1.38 16 21 C -0.08 -1.41 4.71 -19.86 -0.09 -1.50 16 22 C -0.13 -2.67 8.84 22.27 0.20 -2.47 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 24 C -0.12 -1.53 10.05 22.27 0.22 -1.30 16 25 C -0.12 -1.35 10.05 22.27 0.22 -1.13 16 26 C -0.11 -1.38 9.05 22.27 0.20 -1.18 16 27 C 0.54 15.72 5.17 87.99 0.46 16.18 16 28 O -0.50 -17.49 15.98 -2.89 -0.05 -17.53 16 29 H 0.05 2.65 6.90 -2.39 -0.02 2.63 16 30 H 0.04 2.01 6.34 -2.39 -0.02 1.99 16 31 H 0.03 1.31 7.18 -2.39 -0.02 1.29 16 32 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 33 H 0.06 2.79 6.43 -2.39 -0.02 2.77 16 34 H 0.06 2.25 5.81 -2.39 -0.01 2.23 16 35 H 0.02 0.94 6.25 -2.39 -0.01 0.93 16 36 H 0.08 3.54 7.41 -2.38 -0.02 3.53 16 37 H 0.07 2.56 7.26 -2.39 -0.02 2.55 16 38 H 0.15 2.01 7.74 -2.39 -0.02 1.99 16 39 H 0.14 2.04 7.57 -2.39 -0.02 2.02 16 40 H 0.12 0.77 7.39 -2.39 -0.02 0.75 16 41 H 0.07 1.09 7.80 -2.38 -0.02 1.08 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 2.24 7.75 -2.91 -0.02 2.22 16 44 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 46 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 47 H 0.15 1.23 6.06 -2.91 -0.02 1.21 16 Total: -1.00 -73.45 373.98 2.62 -70.84 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.98 Total: 14.63 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 5.99 Total: 10.80 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -6.29 Total: -104.56 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.10 Total: -38.15 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -73.45 2.62 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763326738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.844 kcal (2) G-P(sol) polarization free energy of solvation -73.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds