Wall clock time and date at job start Tue Mar 31 2020 15:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47201 * 2 1 4 4 C 1.50705 * 109.46895 * 119.99490 * 2 1 3 5 5 H 1.07999 * 119.99540 * 114.15520 * 4 2 1 6 6 C 1.37879 * 120.00416 * 294.16165 * 4 2 1 7 7 N 1.31513 * 120.00339 * 158.51332 * 6 4 2 8 8 Si 1.86797 * 119.99651 * 338.51099 * 6 4 2 9 9 H 1.48500 * 109.47151 * 270.00335 * 8 6 4 10 10 H 1.48502 * 109.47387 * 30.00299 * 8 6 4 11 11 H 1.48498 * 109.47297 * 150.00183 * 8 6 4 12 12 N 1.46899 * 109.47214 * 239.99470 * 2 1 3 13 13 C 1.46897 * 111.00018 * 306.04735 * 12 2 1 14 14 C 1.46904 * 110.99860 * 70.00354 * 12 2 1 15 15 N 1.46497 * 109.47076 * 154.99912 * 14 12 2 16 16 C 1.33874 * 122.76318 * 90.02586 * 15 14 12 17 17 O 1.21223 * 125.39312 * 0.02562 * 16 15 14 18 18 C 1.51317 * 109.20576 * 180.02562 * 16 15 14 19 19 C 1.54225 * 103.55595 * 359.97438 * 18 16 15 20 20 C 1.53004 * 110.60675 * 118.67440 * 19 18 16 21 21 C 1.50702 * 110.60869 * 241.48810 * 19 18 16 22 22 C 1.38224 * 120.00310 * 65.28752 * 21 19 18 23 23 C 1.38241 * 120.00175 * 179.74803 * 22 21 19 24 24 C 1.38231 * 119.99582 * 0.52789 * 23 22 21 25 25 C 1.38228 * 120.00132 * 359.74681 * 24 23 22 26 26 C 1.38232 * 120.00563 * 359.97438 * 25 24 23 27 27 C 1.33880 * 122.75994 * 269.73302 * 15 14 12 28 28 O 1.21226 * 125.39454 * 359.97438 * 27 15 14 29 29 H 1.09004 * 109.47490 * 178.75308 * 1 2 3 30 30 H 1.08995 * 109.47536 * 298.75482 * 1 2 3 31 31 H 1.09002 * 109.47480 * 58.75333 * 1 2 3 32 32 H 0.97000 * 119.99586 * 354.93414 * 7 6 4 33 33 H 1.08995 * 109.47201 * 60.00365 * 13 12 2 34 34 H 1.09007 * 109.46810 * 179.97438 * 13 12 2 35 35 H 1.08999 * 109.47212 * 299.99952 * 13 12 2 36 36 H 1.08995 * 109.46632 * 274.99921 * 14 12 2 37 37 H 1.09007 * 109.47011 * 34.99385 * 14 12 2 38 38 H 1.08993 * 110.60744 * 118.51337 * 18 16 15 39 39 H 1.09006 * 110.60214 * 241.48354 * 18 16 15 40 40 H 1.08999 * 109.46416 * 60.00134 * 20 19 18 41 41 H 1.08998 * 109.47453 * 179.97438 * 20 19 18 42 42 H 1.09004 * 109.46766 * 300.00209 * 20 19 18 43 43 H 1.08008 * 120.00062 * 359.97438 * 22 21 19 44 44 H 1.08003 * 119.99852 * 180.29296 * 23 22 21 45 45 H 1.08004 * 119.99742 * 179.77055 * 24 23 22 46 46 H 1.08006 * 119.99987 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.00556 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5731 -1.6402 1.1343 6 6 1.8013 -0.1732 2.4793 7 7 1.8426 -0.9435 3.5444 8 14 1.4296 1.6486 2.6581 9 1 2.6988 2.3968 2.8442 10 1 0.7425 2.1361 1.4351 11 1 0.5521 1.8615 3.8370 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3076 14 6 1.7530 0.0971 -2.4090 15 7 2.7157 -0.2665 -3.4517 16 6 2.4906 -1.2465 -4.3356 17 8 1.4933 -1.9339 -4.3830 18 6 3.6785 -1.3599 -5.2661 19 6 4.6388 -0.2637 -4.7617 20 6 5.9592 -0.8784 -4.2928 21 6 4.8857 0.7616 -5.8382 22 6 3.8485 1.5589 -6.2844 23 6 4.0761 2.5030 -7.2682 24 6 5.3387 2.6422 -7.8135 25 6 6.3747 1.8410 -7.3713 26 6 6.1484 0.9009 -6.3835 27 6 3.8905 0.3575 -3.6025 28 8 4.2922 1.2733 -2.9172 29 1 -0.3634 -1.0274 -0.0224 30 1 -0.3634 0.4943 0.9009 31 1 -0.3634 0.5331 -0.8786 32 1 1.9625 -1.9011 3.4460 33 1 0.3491 -1.9550 -1.3693 34 1 1.8133 -2.5259 -2.2044 35 1 1.7058 -2.6221 -0.4300 36 1 0.7418 -0.1075 -2.7608 37 1 1.8499 1.1582 -2.1790 38 1 4.1401 -2.3436 -5.1808 39 1 3.3794 -1.1633 -6.2957 40 1 6.4296 -1.4053 -5.1230 41 1 6.6231 -0.0887 -3.9412 42 1 5.7655 -1.5792 -3.4807 43 1 2.8608 1.4467 -5.8617 44 1 3.2666 3.1291 -7.6134 45 1 5.5157 3.3772 -8.5848 46 1 7.3611 1.9495 -7.7977 47 1 6.9580 0.2753 -6.0377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763326739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:02 Heat of formation + Delta-G solvation = -18.558507 kcal Electronic energy + Delta-G solvation = -29294.013636 eV Core-core repulsion = 25442.637107 eV Total energy + Delta-G solvation = -3851.376529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23081 -39.52025 -38.40475 -37.38667 -35.95117 -34.65159 -32.58173 -31.33770 -30.45192 -29.44221 -28.45570 -26.67070 -25.26278 -24.97562 -23.50366 -22.84367 -22.54245 -20.89269 -19.56641 -19.05659 -17.71964 -17.44570 -16.94100 -16.46011 -16.25706 -15.34263 -15.21387 -15.04655 -14.90290 -14.24196 -14.19471 -13.98489 -13.94503 -13.70596 -13.54340 -13.28399 -13.13274 -12.74515 -12.59278 -12.45952 -12.13945 -12.09260 -11.88853 -11.53964 -11.42588 -11.29051 -11.15872 -11.07890 -10.83351 -10.56036 -10.49390 -10.09828 -9.90519 -9.75748 -9.60841 -9.20371 -9.02511 -8.99020 -8.17886 -7.55653 -6.46480 -4.03554 0.98896 1.11503 1.58041 2.55507 2.81893 3.41502 3.42487 3.45918 3.59073 3.95257 4.04738 4.19041 4.31987 4.50962 4.58051 4.71219 4.74186 4.82021 4.84184 5.14158 5.19478 5.23171 5.23974 5.29598 5.31646 5.44831 5.51612 5.55152 5.66020 5.70146 5.72997 5.86356 6.04031 6.17520 6.19284 6.22375 6.24462 6.26306 6.34765 6.57059 6.64602 6.67820 6.87677 6.93652 7.18382 7.40066 7.59239 7.82862 7.96821 8.23325 8.43018 8.96832 9.61015 10.92283 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017544 B = 0.003401 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.629838 B = 8231.945050 C = 8715.210539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.193 3.807 3 H 0.037 0.963 4 C -0.590 4.590 5 H 0.064 0.936 6 C 0.037 3.963 7 N -0.901 5.901 8 Si 1.038 2.962 9 H -0.284 1.284 10 H -0.277 1.277 11 H -0.286 1.286 12 N -0.535 5.535 13 C 0.035 3.965 14 C 0.259 3.741 15 N -0.561 5.561 16 C 0.528 3.472 17 O -0.483 6.483 18 C -0.148 4.148 19 C -0.056 4.056 20 C -0.135 4.135 21 C -0.065 4.065 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.105 4.105 27 C 0.542 3.458 28 O -0.459 6.459 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.269 0.731 33 H 0.025 0.975 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 3.078 -24.967 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 H 0.054 0.946 4 C -0.628 4.628 5 H 0.082 0.918 6 C -0.169 4.169 7 N -0.534 5.534 8 Si 0.866 3.134 9 H -0.210 1.210 10 H -0.203 1.203 11 H -0.212 1.212 12 N -0.259 5.259 13 C -0.113 4.113 14 C 0.049 3.951 15 N -0.304 5.304 16 C 0.316 3.684 17 O -0.355 6.355 18 C -0.188 4.188 19 C -0.060 4.060 20 C -0.192 4.192 21 C -0.065 4.065 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.123 4.123 27 C 0.329 3.671 28 O -0.328 6.328 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.134 0.866 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.788 4.362 -23.378 24.731 hybrid contribution -0.682 -1.112 -1.068 1.686 sum 6.106 3.249 -24.445 25.405 Atomic orbital electron populations 1.22795 1.00975 1.00675 0.99296 1.19715 0.89274 0.94757 0.87641 0.94571 1.21832 1.40221 1.10707 0.90002 0.91767 1.25626 0.93748 1.05592 0.91959 1.70813 1.44525 1.06635 1.31468 0.84119 0.77310 0.76227 0.75725 1.21031 1.20300 1.21231 1.61939 1.59475 1.03007 1.01492 1.22332 0.96754 0.90769 1.01405 1.22221 0.89229 0.98737 0.84944 1.46946 1.20028 1.33291 1.30147 1.20693 0.88227 0.78347 0.81084 1.90761 1.30147 1.43432 1.71146 1.22729 0.93795 1.01179 1.01089 1.20367 0.97904 0.94604 0.93088 1.21827 0.93693 1.01570 1.02127 1.19233 0.94396 0.96690 0.96174 1.21005 0.98595 0.96019 0.97440 1.21107 0.97369 0.98033 0.96670 1.21199 0.93128 0.99368 0.99990 1.21161 0.99176 0.95935 0.97287 1.21127 0.96165 0.98578 0.96450 1.20338 0.80667 0.81919 0.84222 1.90769 1.68919 1.26150 1.46920 0.92877 0.92704 0.96120 0.92092 0.95656 0.93411 0.90636 0.91608 0.88416 0.85842 0.86276 0.90418 0.90502 0.90967 0.86559 0.85827 0.85969 0.85762 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 8.00 37.16 0.30 -3.62 16 2 C 0.19 4.66 1.82 -68.86 -0.13 4.54 16 3 H 0.04 0.90 6.18 -51.93 -0.32 0.58 16 4 C -0.59 -16.55 8.31 -34.44 -0.29 -16.84 16 5 H 0.06 1.96 7.13 -52.49 -0.37 1.59 16 6 C 0.04 1.05 5.27 -17.82 -0.09 0.96 16 7 N -0.90 -27.56 13.70 55.43 0.76 -26.80 16 8 Si 1.04 25.35 26.38 -169.99 -4.49 20.86 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.23 5.87 56.52 0.33 -5.90 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 N -0.53 -11.55 4.80 -240.19 -1.15 -12.70 16 13 C 0.04 0.73 8.53 60.06 0.51 1.24 16 14 C 0.26 4.74 4.63 -63.31 -0.29 4.45 16 15 N -0.56 -8.86 2.77 -118.62 -0.33 -9.19 16 16 C 0.53 7.43 7.30 -11.09 -0.08 7.35 16 17 O -0.48 -8.04 15.95 5.61 0.09 -7.95 16 18 C -0.15 -1.42 6.16 -26.94 -0.17 -1.59 16 19 C -0.06 -0.61 0.91 -155.87 -0.14 -0.75 16 20 C -0.13 -1.23 7.11 37.16 0.26 -0.97 16 21 C -0.06 -0.65 4.71 -104.62 -0.49 -1.15 16 22 C -0.11 -1.15 8.84 -39.59 -0.35 -1.50 16 23 C -0.11 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 25 C -0.12 -0.91 10.05 -39.59 -0.40 -1.30 16 26 C -0.11 -0.90 9.05 -39.58 -0.36 -1.26 16 27 C 0.54 8.34 5.95 -11.08 -0.07 8.28 16 28 O -0.46 -8.73 17.47 5.60 0.10 -8.63 16 29 H 0.05 1.16 6.25 -51.93 -0.32 0.84 16 30 H 0.05 1.23 5.66 -51.93 -0.29 0.94 16 31 H 0.02 0.39 7.37 -51.93 -0.38 0.00 16 32 H 0.27 8.20 8.73 -40.82 -0.36 7.84 16 33 H 0.02 0.51 6.18 -51.93 -0.32 0.19 16 34 H 0.05 0.91 5.78 -51.92 -0.30 0.61 16 35 H 0.07 1.69 6.75 -51.93 -0.35 1.34 16 36 H 0.07 1.15 7.33 -51.93 -0.38 0.77 16 37 H 0.10 1.80 7.32 -51.93 -0.38 1.42 16 38 H 0.12 0.94 7.74 -51.93 -0.40 0.54 16 39 H 0.12 0.93 7.57 -51.93 -0.39 0.54 16 40 H 0.08 0.47 7.39 -51.93 -0.38 0.09 16 41 H 0.08 0.74 7.80 -51.93 -0.41 0.34 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.12 1.22 7.75 -52.48 -0.41 0.81 16 44 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 45 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 46 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 47 H 0.13 0.87 6.06 -52.49 -0.32 0.55 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -33.69 369.18 -8.68 -42.37 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.65 Total: 1.37 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.57 Total: -4.90 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.72 Total: -48.69 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.19 Total: -16.58 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.49 Total: 20.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.69 -8.68 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763326739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.809 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds