Wall clock time and date at job start Tue Mar 31 2020 15:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47201 * 2 1 4 4 C 1.50705 * 109.46895 * 119.99490 * 2 1 3 5 5 H 1.07999 * 119.99540 * 114.15520 * 4 2 1 6 6 C 1.37879 * 120.00416 * 294.16165 * 4 2 1 7 7 N 1.31513 * 120.00339 * 158.51332 * 6 4 2 8 8 Si 1.86797 * 119.99651 * 338.51099 * 6 4 2 9 9 H 1.48500 * 109.47151 * 270.00335 * 8 6 4 10 10 H 1.48502 * 109.47387 * 30.00299 * 8 6 4 11 11 H 1.48498 * 109.47297 * 150.00183 * 8 6 4 12 12 N 1.46899 * 109.47214 * 239.99470 * 2 1 3 13 13 C 1.46897 * 111.00018 * 306.04735 * 12 2 1 14 14 C 1.46904 * 110.99860 * 70.00354 * 12 2 1 15 15 N 1.46497 * 109.47076 * 154.99912 * 14 12 2 16 16 C 1.33874 * 122.76318 * 90.02586 * 15 14 12 17 17 O 1.21223 * 125.39312 * 0.02562 * 16 15 14 18 18 C 1.51317 * 109.20576 * 180.02562 * 16 15 14 19 19 C 1.54225 * 103.55595 * 359.97438 * 18 16 15 20 20 C 1.53004 * 110.60675 * 118.67440 * 19 18 16 21 21 C 1.50702 * 110.60869 * 241.48810 * 19 18 16 22 22 C 1.38224 * 120.00310 * 65.28752 * 21 19 18 23 23 C 1.38241 * 120.00175 * 179.74803 * 22 21 19 24 24 C 1.38231 * 119.99582 * 0.52789 * 23 22 21 25 25 C 1.38228 * 120.00132 * 359.74681 * 24 23 22 26 26 C 1.38232 * 120.00563 * 359.97438 * 25 24 23 27 27 C 1.33880 * 122.75994 * 269.73302 * 15 14 12 28 28 O 1.21226 * 125.39454 * 359.97438 * 27 15 14 29 29 H 1.09004 * 109.47490 * 178.75308 * 1 2 3 30 30 H 1.08995 * 109.47536 * 298.75482 * 1 2 3 31 31 H 1.09002 * 109.47480 * 58.75333 * 1 2 3 32 32 H 0.97000 * 119.99586 * 354.93414 * 7 6 4 33 33 H 1.08995 * 109.47201 * 60.00365 * 13 12 2 34 34 H 1.09007 * 109.46810 * 179.97438 * 13 12 2 35 35 H 1.08999 * 109.47212 * 299.99952 * 13 12 2 36 36 H 1.08995 * 109.46632 * 274.99921 * 14 12 2 37 37 H 1.09007 * 109.47011 * 34.99385 * 14 12 2 38 38 H 1.08993 * 110.60744 * 118.51337 * 18 16 15 39 39 H 1.09006 * 110.60214 * 241.48354 * 18 16 15 40 40 H 1.08999 * 109.46416 * 60.00134 * 20 19 18 41 41 H 1.08998 * 109.47453 * 179.97438 * 20 19 18 42 42 H 1.09004 * 109.46766 * 300.00209 * 20 19 18 43 43 H 1.08008 * 120.00062 * 359.97438 * 22 21 19 44 44 H 1.08003 * 119.99852 * 180.29296 * 23 22 21 45 45 H 1.08004 * 119.99742 * 179.77055 * 24 23 22 46 46 H 1.08006 * 119.99987 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.00556 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5731 -1.6402 1.1343 6 6 1.8013 -0.1732 2.4793 7 7 1.8426 -0.9435 3.5444 8 14 1.4296 1.6486 2.6581 9 1 2.6988 2.3968 2.8442 10 1 0.7425 2.1361 1.4351 11 1 0.5521 1.8615 3.8370 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3076 14 6 1.7530 0.0971 -2.4090 15 7 2.7157 -0.2665 -3.4517 16 6 2.4906 -1.2465 -4.3356 17 8 1.4933 -1.9339 -4.3830 18 6 3.6785 -1.3599 -5.2661 19 6 4.6388 -0.2637 -4.7617 20 6 5.9592 -0.8784 -4.2928 21 6 4.8857 0.7616 -5.8382 22 6 3.8485 1.5589 -6.2844 23 6 4.0761 2.5030 -7.2682 24 6 5.3387 2.6422 -7.8135 25 6 6.3747 1.8410 -7.3713 26 6 6.1484 0.9009 -6.3835 27 6 3.8905 0.3575 -3.6025 28 8 4.2922 1.2733 -2.9172 29 1 -0.3634 -1.0274 -0.0224 30 1 -0.3634 0.4943 0.9009 31 1 -0.3634 0.5331 -0.8786 32 1 1.9625 -1.9011 3.4460 33 1 0.3491 -1.9550 -1.3693 34 1 1.8133 -2.5259 -2.2044 35 1 1.7058 -2.6221 -0.4300 36 1 0.7418 -0.1075 -2.7608 37 1 1.8499 1.1582 -2.1790 38 1 4.1401 -2.3436 -5.1808 39 1 3.3794 -1.1633 -6.2957 40 1 6.4296 -1.4053 -5.1230 41 1 6.6231 -0.0887 -3.9412 42 1 5.7655 -1.5792 -3.4807 43 1 2.8608 1.4467 -5.8617 44 1 3.2666 3.1291 -7.6134 45 1 5.5157 3.3772 -8.5848 46 1 7.3611 1.9495 -7.7977 47 1 6.9580 0.2753 -6.0377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763326739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:01 Heat of formation + Delta-G solvation = -41.078284 kcal Electronic energy + Delta-G solvation = -29294.990166 eV Core-core repulsion = 25442.637107 eV Total energy + Delta-G solvation = -3852.353060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.33307 -40.35840 -39.56893 -39.04334 -37.08455 -35.85298 -34.60541 -32.03023 -31.61268 -30.80222 -29.42612 -28.08463 -27.06536 -26.23519 -25.00849 -23.80751 -23.22563 -21.97229 -21.19194 -20.30986 -19.51099 -18.58785 -18.27636 -17.67742 -17.28073 -16.69053 -16.33291 -15.92108 -15.88555 -15.69872 -15.54102 -15.35480 -15.03591 -14.93701 -14.68225 -14.41687 -14.29753 -14.15513 -13.97476 -13.43102 -13.39166 -13.36712 -13.12841 -12.81871 -12.78653 -12.72132 -12.60846 -12.39746 -12.00143 -11.98204 -11.80856 -11.62300 -11.58186 -11.17122 -11.07205 -11.03476 -10.40215 -9.82643 -9.69230 -9.28232 -8.76525 -6.34109 0.31827 0.42728 0.50585 1.36979 1.44571 1.49638 1.67575 1.68614 2.46502 2.72286 3.00410 3.02079 3.08324 3.17910 3.37879 3.51991 3.82597 3.83643 4.07483 4.09033 4.15716 4.20235 4.30743 4.33640 4.48476 4.49369 4.51583 4.58115 4.58490 4.58967 4.68487 4.71176 4.76849 4.83927 4.88656 5.03633 5.05255 5.14121 5.17321 5.35977 5.56392 5.58581 5.63122 5.65335 5.76037 6.02286 6.08490 6.12031 6.26204 6.30731 6.62934 6.71719 7.38984 8.60757 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017544 B = 0.003401 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.629838 B = 8231.945050 C = 8715.210539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.195 3.805 3 H 0.033 0.967 4 C -0.590 4.590 5 H 0.024 0.976 6 C -0.012 4.012 7 N -0.932 5.932 8 Si 1.077 2.923 9 H -0.278 1.278 10 H -0.246 1.246 11 H -0.282 1.282 12 N -0.552 5.552 13 C 0.049 3.951 14 C 0.262 3.738 15 N -0.568 5.568 16 C 0.525 3.475 17 O -0.510 6.510 18 C -0.132 4.132 19 C -0.043 4.043 20 C -0.135 4.135 21 C -0.079 4.079 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.108 4.108 27 C 0.536 3.464 28 O -0.505 6.505 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.254 0.746 33 H 0.030 0.970 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.136 0.864 45 H 0.145 0.855 46 H 0.151 0.849 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.796 4.154 -28.349 29.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.087 3.913 3 H 0.051 0.949 4 C -0.628 4.628 5 H 0.043 0.957 6 C -0.211 4.211 7 N -0.567 5.567 8 Si 0.899 3.101 9 H -0.204 1.204 10 H -0.169 1.169 11 H -0.208 1.208 12 N -0.277 5.277 13 C -0.099 4.099 14 C 0.051 3.949 15 N -0.310 5.310 16 C 0.316 3.684 17 O -0.384 6.384 18 C -0.171 4.171 19 C -0.046 4.046 20 C -0.192 4.192 21 C -0.080 4.080 22 C -0.150 4.150 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.126 4.126 27 C 0.325 3.675 28 O -0.377 6.377 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.170 0.830 39 H 0.162 0.838 40 H 0.136 0.864 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.153 0.847 45 H 0.163 0.837 46 H 0.168 0.832 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.684 5.411 -26.817 28.416 hybrid contribution -0.895 -1.482 -0.105 1.735 sum 6.789 3.929 -26.922 28.041 Atomic orbital electron populations 1.22638 0.99008 1.00872 1.00558 1.19526 0.90612 0.93976 0.87152 0.94922 1.21965 1.39302 1.09344 0.92181 0.95734 1.26971 0.93257 1.09121 0.91741 1.70935 1.47336 1.05980 1.32490 0.83638 0.77864 0.71414 0.77204 1.20360 1.16927 1.20798 1.61790 1.60179 1.03527 1.02173 1.22158 0.96961 0.90186 1.00563 1.22076 0.90562 0.97997 0.84274 1.47069 1.20053 1.34102 1.29820 1.21459 0.88979 0.77061 0.80941 1.90747 1.31590 1.44213 1.71865 1.22842 0.91187 1.02218 1.00881 1.20368 0.98194 0.94824 0.91259 1.21915 0.92750 1.01294 1.03277 1.19228 0.95235 0.97094 0.96416 1.21067 0.98373 0.97167 0.98431 1.21339 0.98502 0.97924 0.96489 1.21547 0.92650 0.99555 1.00071 1.21533 1.00337 0.95138 0.96717 1.21399 0.95847 0.98957 0.96359 1.21234 0.80437 0.81020 0.84772 1.90733 1.69814 1.28179 1.48936 0.93397 0.93152 0.92928 0.93677 0.95136 0.92070 0.93493 0.90683 0.88869 0.82952 0.83751 0.86397 0.91234 0.92160 0.87755 0.84660 0.83696 0.83177 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.37 8.00 71.98 0.58 -6.79 16 2 C 0.20 9.45 1.82 44.17 0.08 9.53 16 3 H 0.03 1.62 6.18 -2.39 -0.01 1.60 16 4 C -0.59 -34.20 8.31 25.60 0.21 -33.99 16 5 H 0.02 1.58 7.13 -2.91 -0.02 1.56 16 6 C -0.01 -0.69 5.27 84.66 0.45 -0.24 16 7 N -0.93 -58.95 13.70 21.45 0.29 -58.66 16 8 Si 1.08 51.02 26.38 68.60 1.81 52.83 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.25 -10.28 5.87 99.48 0.58 -9.70 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 N -0.55 -24.08 4.80 -913.84 -4.39 -28.47 16 13 C 0.05 2.06 8.53 127.69 1.09 3.15 16 14 C 0.26 9.51 4.63 170.81 0.79 10.31 16 15 N -0.57 -17.68 2.77 -767.02 -2.13 -19.80 16 16 C 0.52 14.06 7.30 87.99 0.64 14.70 16 17 O -0.51 -16.38 15.95 -2.85 -0.05 -16.43 16 18 C -0.13 -2.17 6.16 30.46 0.19 -1.99 16 19 C -0.04 -0.85 0.91 -53.06 -0.05 -0.90 16 20 C -0.14 -2.14 7.11 71.98 0.51 -1.62 16 21 C -0.08 -1.43 4.71 -19.87 -0.09 -1.53 16 22 C -0.13 -2.54 8.84 22.27 0.20 -2.34 16 23 C -0.12 -1.96 10.05 22.27 0.22 -1.73 16 24 C -0.12 -1.52 10.05 22.27 0.22 -1.30 16 25 C -0.12 -1.42 10.05 22.27 0.22 -1.20 16 26 C -0.11 -1.50 9.05 22.27 0.20 -1.29 16 27 C 0.54 16.32 5.95 87.99 0.52 16.85 16 28 O -0.50 -19.53 17.47 -2.86 -0.05 -19.58 16 29 H 0.05 2.08 6.25 -2.39 -0.01 2.06 16 30 H 0.05 2.19 5.66 -2.39 -0.01 2.17 16 31 H 0.05 1.90 7.37 -2.39 -0.02 1.89 16 32 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 33 H 0.03 1.22 6.18 -2.39 -0.01 1.21 16 34 H 0.06 2.35 5.78 -2.38 -0.01 2.34 16 35 H 0.05 2.19 6.75 -2.39 -0.02 2.18 16 36 H 0.08 2.57 7.33 -2.39 -0.02 2.55 16 37 H 0.09 3.44 7.32 -2.38 -0.02 3.42 16 38 H 0.15 1.70 7.74 -2.39 -0.02 1.68 16 39 H 0.14 1.74 7.57 -2.38 -0.02 1.72 16 40 H 0.12 0.91 7.39 -2.39 -0.02 0.89 16 41 H 0.07 1.22 7.80 -2.39 -0.02 1.20 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.10 2.15 7.75 -2.91 -0.02 2.13 16 44 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 46 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 47 H 0.15 1.40 6.06 -2.91 -0.02 1.38 16 Total: -1.00 -76.78 369.18 2.31 -74.47 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.82 Total: 16.02 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.99 Total: -0.39 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -6.22 Total: -106.93 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.10 Total: -36.00 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 1.81 Total: 52.83 kcal Total: -76.78 2.31 -74.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763326739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.396 kcal (2) G-P(sol) polarization free energy of solvation -76.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds