Wall clock time and date at job start Tue Mar 31 2020 15:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47387 * 2 1 4 4 C 1.50706 * 109.47039 * 119.99708 * 2 1 3 5 5 H 1.07999 * 119.99687 * 120.00398 * 4 2 1 6 6 C 1.37873 * 120.00283 * 299.99804 * 4 2 1 7 7 N 1.31513 * 120.00018 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00157 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47218 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47154 * 120.00331 * 8 6 4 11 11 H 1.48503 * 109.47215 * 240.00145 * 8 6 4 12 12 N 1.46892 * 109.47610 * 239.99869 * 2 1 3 13 13 C 1.46909 * 110.99866 * 306.04605 * 12 2 1 14 14 C 1.46905 * 110.99899 * 69.99523 * 12 2 1 15 15 N 1.46500 * 109.46861 * 155.00518 * 14 12 2 16 16 C 1.33883 * 122.76416 * 90.03037 * 15 14 12 17 17 O 1.21226 * 125.39547 * 359.97438 * 16 15 14 18 18 C 1.51308 * 109.20609 * 179.97438 * 16 15 14 19 19 C 1.54235 * 103.55733 * 359.97438 * 18 16 15 20 20 C 1.52998 * 110.60781 * 241.32510 * 19 18 16 21 21 C 1.50708 * 110.60238 * 118.51940 * 19 18 16 22 22 C 1.38236 * 119.99513 * 294.31547 * 21 19 18 23 23 C 1.38239 * 119.99248 * 179.79128 * 22 21 19 24 24 C 1.38240 * 120.00144 * 0.46366 * 23 22 21 25 25 C 1.38227 * 119.99937 * 359.76897 * 24 23 22 26 26 C 1.38235 * 119.99640 * 114.59387 * 21 19 18 27 27 C 1.33881 * 122.76124 * 269.73297 * 15 14 12 28 28 O 1.21230 * 125.39670 * 359.97438 * 27 15 14 29 29 H 1.08995 * 109.46792 * 60.00141 * 1 2 3 30 30 H 1.09005 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46914 * 300.00143 * 1 2 3 32 32 H 0.96998 * 120.00581 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46940 * 59.99657 * 13 12 2 34 34 H 1.08997 * 109.47028 * 179.97438 * 13 12 2 35 35 H 1.08996 * 109.46980 * 299.99658 * 13 12 2 36 36 H 1.09001 * 109.47406 * 275.00659 * 14 12 2 37 37 H 1.09002 * 109.46985 * 35.00430 * 14 12 2 38 38 H 1.09001 * 110.60728 * 118.51112 * 18 16 15 39 39 H 1.08994 * 110.60651 * 241.48022 * 18 16 15 40 40 H 1.09003 * 109.46687 * 60.00032 * 20 19 18 41 41 H 1.08998 * 109.47057 * 179.97438 * 20 19 18 42 42 H 1.08995 * 109.47391 * 300.00324 * 20 19 18 43 43 H 1.07991 * 120.00548 * 0.02562 * 22 21 19 44 44 H 1.07996 * 119.99738 * 180.25388 * 23 22 21 45 45 H 1.08002 * 119.99630 * 179.79171 * 24 23 22 46 46 H 1.08003 * 120.00228 * 180.02562 * 25 24 23 47 47 H 1.07996 * 120.00437 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1464 -2.2869 3.6039 10 1 3.1466 -0.1873 4.8165 11 1 1.1660 -1.5865 4.8161 12 7 2.0197 -0.6925 -1.1993 13 6 1.4344 -2.0355 -1.3077 14 6 1.7529 0.0972 -2.4090 15 7 2.7156 -0.2664 -3.4517 16 6 2.4906 -1.2464 -4.3357 17 8 1.4936 -1.9344 -4.3826 18 6 3.6779 -1.3590 -5.2669 19 6 4.6380 -0.2621 -4.7630 20 6 4.8904 0.7769 -5.8572 21 6 5.9377 -0.8675 -4.2986 22 6 5.9573 -1.6989 -3.1945 23 6 7.1488 -2.2576 -2.7712 24 6 8.3221 -1.9772 -3.4463 25 6 8.3031 -1.1419 -4.5475 26 6 7.1109 -0.5866 -4.9735 27 6 3.8904 0.3577 -3.6026 28 8 4.2922 1.2735 -2.9173 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7082 1.1610 3.4844 33 1 0.3491 -1.9550 -1.3692 34 1 1.8135 -2.5258 -2.2043 35 1 1.7060 -2.6221 -0.4301 36 1 0.7417 -0.1073 -2.7608 37 1 1.8499 1.1583 -2.1789 38 1 4.1401 -2.3424 -5.1820 39 1 3.3780 -1.1624 -6.2962 40 1 3.9459 1.2391 -6.1442 41 1 5.5697 1.5422 -5.4818 42 1 5.3351 0.2900 -6.7251 43 1 5.0413 -1.9151 -2.6648 44 1 7.1636 -2.9105 -1.9110 45 1 9.2535 -2.4110 -3.1135 46 1 9.2197 -0.9231 -5.0752 47 1 7.0962 0.0662 -5.8337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763326740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:06 Heat of formation + Delta-G solvation = -19.544686 kcal Electronic energy + Delta-G solvation = -29502.582142 eV Core-core repulsion = 25651.162849 eV Total energy + Delta-G solvation = -3851.419293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13259 -39.35044 -38.30968 -37.17776 -35.86110 -34.54337 -32.56346 -31.13805 -30.23311 -28.90943 -28.25968 -26.56863 -25.26395 -25.08317 -23.55692 -22.74801 -22.37465 -20.83038 -19.63816 -19.01537 -17.64300 -16.92179 -16.42301 -16.14421 -16.01832 -15.20743 -15.05185 -14.94224 -14.77191 -14.33936 -14.14908 -13.89749 -13.78653 -13.62670 -13.45875 -13.24496 -12.98705 -12.58436 -12.52374 -12.45351 -12.06762 -11.87133 -11.58937 -11.21408 -11.18107 -11.13569 -11.00716 -10.90497 -10.74184 -10.58712 -10.44490 -10.10325 -10.00681 -9.80522 -9.53644 -8.99762 -8.93589 -8.82961 -8.40749 -7.37657 -6.02770 -4.06337 1.16689 1.31921 1.66203 2.66055 2.90703 3.29957 3.37760 3.42243 3.59396 4.05603 4.13300 4.27060 4.36847 4.42110 4.70736 4.89856 4.91294 4.99446 5.04393 5.24214 5.25204 5.29903 5.31801 5.44017 5.45926 5.52031 5.55194 5.70347 5.79713 5.85008 5.86100 5.94283 6.17981 6.35362 6.35981 6.42370 6.46003 6.59910 6.75250 6.84044 6.87900 7.01078 7.04334 7.33688 7.48752 7.64546 7.77238 7.97357 8.02868 8.30054 8.48715 8.98241 9.58418 11.04562 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.004051 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.568565 B = 6910.273787 C = 8111.451125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.217 3.783 3 H 0.043 0.957 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.543 5.543 13 C 0.034 3.966 14 C 0.263 3.737 15 N -0.560 5.560 16 C 0.528 3.472 17 O -0.483 6.483 18 C -0.149 4.149 19 C -0.056 4.056 20 C -0.134 4.134 21 C -0.069 4.069 22 C -0.103 4.103 23 C -0.112 4.112 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.108 4.108 27 C 0.541 3.459 28 O -0.459 6.459 29 H 0.005 0.995 30 H 0.035 0.965 31 H 0.091 0.909 32 H 0.260 0.740 33 H 0.025 0.975 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.512 -3.481 -19.201 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.111 3.889 3 H 0.060 0.940 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.268 5.268 13 C -0.114 4.114 14 C 0.052 3.948 15 N -0.304 5.304 16 C 0.316 3.684 17 O -0.356 6.356 18 C -0.188 4.188 19 C -0.060 4.060 20 C -0.191 4.191 21 C -0.069 4.069 22 C -0.121 4.121 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.126 4.126 27 C 0.327 3.673 28 O -0.327 6.327 29 H 0.024 0.976 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.585 -3.256 -18.602 21.649 hybrid contribution -0.650 -0.359 1.029 1.269 sum 9.935 -3.615 -17.572 20.507 Atomic orbital electron populations 1.22453 1.00368 0.99737 1.00679 1.19338 0.89909 0.94524 0.85138 0.93964 1.21063 1.30591 1.12490 0.89390 0.91929 1.24908 0.95197 0.95121 0.98993 1.69882 1.37004 1.23029 1.23393 0.86442 0.78514 0.79636 0.82826 1.19783 1.21031 1.21142 1.62026 1.59634 1.03036 1.02087 1.22315 0.96984 0.91055 1.01024 1.22173 0.89008 0.98824 0.84783 1.46982 1.20070 1.33132 1.30192 1.20683 0.88163 0.78411 0.81151 1.90759 1.30191 1.43451 1.71158 1.22728 0.93677 1.01398 1.01046 1.20351 0.93734 0.96237 0.95647 1.21822 1.03197 0.97627 0.96479 1.19164 0.92703 0.98313 0.96738 1.21147 0.99068 0.96375 0.95548 1.21162 0.92329 0.99761 0.99708 1.21202 0.98151 0.98372 0.95848 1.21107 0.97738 0.97899 0.97275 1.21053 0.91662 0.99747 1.00110 1.20341 0.80617 0.81988 0.84310 1.90774 1.68901 1.26329 1.46745 0.97562 0.94627 0.89008 0.92993 0.95636 0.93712 0.90844 0.91704 0.88384 0.86189 0.86107 0.91499 0.90531 0.90401 0.85789 0.85684 0.86067 0.85971 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.26 37.16 0.31 -3.85 16 2 C 0.22 5.47 2.27 -68.87 -0.16 5.31 16 3 H 0.04 1.18 7.80 -51.93 -0.40 0.78 16 4 C -0.50 -13.65 7.97 -34.44 -0.27 -13.92 16 5 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.83 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 N -0.54 -11.87 4.80 -240.18 -1.15 -13.02 16 13 C 0.03 0.71 8.53 60.07 0.51 1.22 16 14 C 0.26 4.99 4.63 -63.31 -0.29 4.70 16 15 N -0.56 -9.09 2.77 -118.61 -0.33 -9.41 16 16 C 0.53 7.60 7.30 -11.09 -0.08 7.52 16 17 O -0.48 -8.23 15.95 5.60 0.09 -8.14 16 18 C -0.15 -1.47 6.16 -26.94 -0.17 -1.64 16 19 C -0.06 -0.62 0.91 -155.86 -0.14 -0.77 16 20 C -0.13 -1.08 7.09 37.16 0.26 -0.82 16 21 C -0.07 -0.80 4.71 -104.62 -0.49 -1.29 16 22 C -0.10 -1.36 8.87 -39.58 -0.35 -1.72 16 23 C -0.11 -1.31 10.05 -39.58 -0.40 -1.71 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 26 C -0.11 -1.04 9.05 -39.58 -0.36 -1.40 16 27 C 0.54 8.53 5.96 -11.09 -0.07 8.46 16 28 O -0.46 -8.96 17.47 5.60 0.10 -8.86 16 29 H 0.01 0.12 7.31 -51.93 -0.38 -0.26 16 30 H 0.03 0.83 6.33 -51.93 -0.33 0.50 16 31 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.03 0.52 6.20 -51.93 -0.32 0.20 16 34 H 0.04 0.86 5.78 -51.93 -0.30 0.56 16 35 H 0.07 1.58 6.86 -51.93 -0.36 1.23 16 36 H 0.07 1.21 7.30 -51.93 -0.38 0.83 16 37 H 0.10 1.93 7.32 -51.93 -0.38 1.55 16 38 H 0.12 1.08 7.58 -51.93 -0.39 0.69 16 39 H 0.12 0.84 7.74 -51.93 -0.40 0.43 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.67 7.80 -51.93 -0.41 0.26 16 42 H 0.08 0.42 7.39 -51.93 -0.38 0.03 16 43 H 0.12 1.86 7.75 -52.49 -0.41 1.46 16 44 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 47 H 0.13 0.92 6.06 -52.49 -0.32 0.60 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -32.17 373.34 -9.32 -41.49 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.67 Total: 2.08 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.59 Total: -1.46 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.85 Total: -47.26 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.19 Total: -17.00 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.17 -9.32 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763326740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.947 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds