Wall clock time and date at job start Tue Mar 31 2020 15:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47387 * 2 1 4 4 C 1.50706 * 109.47039 * 119.99708 * 2 1 3 5 5 H 1.07999 * 119.99687 * 120.00398 * 4 2 1 6 6 C 1.37873 * 120.00283 * 299.99804 * 4 2 1 7 7 N 1.31513 * 120.00018 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00157 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47218 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47154 * 120.00331 * 8 6 4 11 11 H 1.48503 * 109.47215 * 240.00145 * 8 6 4 12 12 N 1.46892 * 109.47610 * 239.99869 * 2 1 3 13 13 C 1.46909 * 110.99866 * 306.04605 * 12 2 1 14 14 C 1.46905 * 110.99899 * 69.99523 * 12 2 1 15 15 N 1.46500 * 109.46861 * 155.00518 * 14 12 2 16 16 C 1.33883 * 122.76416 * 90.03037 * 15 14 12 17 17 O 1.21226 * 125.39547 * 359.97438 * 16 15 14 18 18 C 1.51308 * 109.20609 * 179.97438 * 16 15 14 19 19 C 1.54235 * 103.55733 * 359.97438 * 18 16 15 20 20 C 1.52998 * 110.60781 * 241.32510 * 19 18 16 21 21 C 1.50708 * 110.60238 * 118.51940 * 19 18 16 22 22 C 1.38236 * 119.99513 * 294.31547 * 21 19 18 23 23 C 1.38239 * 119.99248 * 179.79128 * 22 21 19 24 24 C 1.38240 * 120.00144 * 0.46366 * 23 22 21 25 25 C 1.38227 * 119.99937 * 359.76897 * 24 23 22 26 26 C 1.38235 * 119.99640 * 114.59387 * 21 19 18 27 27 C 1.33881 * 122.76124 * 269.73297 * 15 14 12 28 28 O 1.21230 * 125.39670 * 359.97438 * 27 15 14 29 29 H 1.08995 * 109.46792 * 60.00141 * 1 2 3 30 30 H 1.09005 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46914 * 300.00143 * 1 2 3 32 32 H 0.96998 * 120.00581 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46940 * 59.99657 * 13 12 2 34 34 H 1.08997 * 109.47028 * 179.97438 * 13 12 2 35 35 H 1.08996 * 109.46980 * 299.99658 * 13 12 2 36 36 H 1.09001 * 109.47406 * 275.00659 * 14 12 2 37 37 H 1.09002 * 109.46985 * 35.00430 * 14 12 2 38 38 H 1.09001 * 110.60728 * 118.51112 * 18 16 15 39 39 H 1.08994 * 110.60651 * 241.48022 * 18 16 15 40 40 H 1.09003 * 109.46687 * 60.00032 * 20 19 18 41 41 H 1.08998 * 109.47057 * 179.97438 * 20 19 18 42 42 H 1.08995 * 109.47391 * 300.00324 * 20 19 18 43 43 H 1.07991 * 120.00548 * 0.02562 * 22 21 19 44 44 H 1.07996 * 119.99738 * 180.25388 * 23 22 21 45 45 H 1.08002 * 119.99630 * 179.79171 * 24 23 22 46 46 H 1.08003 * 120.00228 * 180.02562 * 25 24 23 47 47 H 1.07996 * 120.00437 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1464 -2.2869 3.6039 10 1 3.1466 -0.1873 4.8165 11 1 1.1660 -1.5865 4.8161 12 7 2.0197 -0.6925 -1.1993 13 6 1.4344 -2.0355 -1.3077 14 6 1.7529 0.0972 -2.4090 15 7 2.7156 -0.2664 -3.4517 16 6 2.4906 -1.2464 -4.3357 17 8 1.4936 -1.9344 -4.3826 18 6 3.6779 -1.3590 -5.2669 19 6 4.6380 -0.2621 -4.7630 20 6 4.8904 0.7769 -5.8572 21 6 5.9377 -0.8675 -4.2986 22 6 5.9573 -1.6989 -3.1945 23 6 7.1488 -2.2576 -2.7712 24 6 8.3221 -1.9772 -3.4463 25 6 8.3031 -1.1419 -4.5475 26 6 7.1109 -0.5866 -4.9735 27 6 3.8904 0.3577 -3.6026 28 8 4.2922 1.2735 -2.9173 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7082 1.1610 3.4844 33 1 0.3491 -1.9550 -1.3692 34 1 1.8135 -2.5258 -2.2043 35 1 1.7060 -2.6221 -0.4301 36 1 0.7417 -0.1073 -2.7608 37 1 1.8499 1.1583 -2.1789 38 1 4.1401 -2.3424 -5.1820 39 1 3.3780 -1.1624 -6.2962 40 1 3.9459 1.2391 -6.1442 41 1 5.5697 1.5422 -5.4818 42 1 5.3351 0.2900 -6.7251 43 1 5.0413 -1.9151 -2.6648 44 1 7.1636 -2.9105 -1.9110 45 1 9.2535 -2.4110 -3.1135 46 1 9.2197 -0.9231 -5.0752 47 1 7.0962 0.0662 -5.8337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763326740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:05 Heat of formation + Delta-G solvation = -39.723399 kcal Electronic energy + Delta-G solvation = -29503.457156 eV Core-core repulsion = 25651.162849 eV Total energy + Delta-G solvation = -3852.294307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.28906 -40.31530 -39.53904 -38.91131 -37.05129 -35.81589 -34.50298 -31.96332 -31.31470 -30.46426 -29.37303 -28.05014 -27.34876 -26.23021 -25.09280 -23.78627 -23.21373 -22.04369 -21.25401 -20.28820 -18.71885 -18.46094 -17.82577 -17.69231 -17.23263 -16.83617 -16.20536 -16.14236 -15.88675 -15.68960 -15.43570 -15.33155 -15.04090 -14.79234 -14.75148 -14.44078 -14.27242 -13.98728 -13.56714 -13.32072 -13.30398 -13.12596 -12.98910 -12.76681 -12.75973 -12.71144 -12.58730 -12.42895 -12.15361 -12.01259 -11.93763 -11.79170 -11.55991 -11.16686 -11.01796 -10.88364 -10.55703 -9.80983 -9.67261 -9.16903 -8.16592 -6.27790 0.32512 0.46369 0.52402 1.37674 1.38582 1.42087 1.51542 1.73331 2.38688 2.74374 3.07557 3.12160 3.14155 3.26540 3.41690 3.57731 3.85850 3.88368 4.12528 4.14385 4.17166 4.29402 4.31983 4.47550 4.52990 4.60247 4.61633 4.64214 4.66334 4.70875 4.78564 4.81988 4.90918 4.99231 5.01613 5.06759 5.15257 5.23075 5.37000 5.57734 5.60208 5.61064 5.64395 5.66526 5.80111 6.06121 6.10444 6.28540 6.32765 6.47106 6.73456 6.82377 7.40863 8.90025 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.004051 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.568565 B = 6910.273787 C = 8111.451125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.223 3.777 3 H 0.006 0.994 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.276 1.276 12 N -0.553 5.553 13 C 0.048 3.952 14 C 0.267 3.733 15 N -0.567 5.567 16 C 0.524 3.476 17 O -0.511 6.511 18 C -0.131 4.131 19 C -0.043 4.043 20 C -0.134 4.134 21 C -0.080 4.080 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.103 4.103 27 C 0.535 3.465 28 O -0.508 6.508 29 H 0.025 0.975 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.263 0.737 33 H 0.025 0.975 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.165 0.835 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.122 0.878 45 H 0.144 0.856 46 H 0.156 0.844 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.537 -4.277 -21.995 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.117 3.883 3 H 0.024 0.976 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.202 1.202 12 N -0.278 5.278 13 C -0.100 4.100 14 C 0.056 3.944 15 N -0.310 5.310 16 C 0.315 3.685 17 O -0.385 6.385 18 C -0.170 4.170 19 C -0.047 4.047 20 C -0.191 4.191 21 C -0.081 4.081 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.120 4.120 27 C 0.324 3.676 28 O -0.380 6.380 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.183 0.817 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.137 0.863 43 H 0.110 0.890 44 H 0.141 0.859 45 H 0.162 0.838 46 H 0.174 0.826 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.617 -4.072 -21.438 25.206 hybrid contribution -1.236 -0.093 1.878 2.250 sum 11.382 -4.166 -19.559 23.010 Atomic orbital electron populations 1.22229 0.99426 0.99672 1.00363 1.19050 0.90484 0.92622 0.86183 0.97637 1.21275 1.30839 1.12467 0.90711 0.92889 1.25668 0.95288 0.95782 1.01761 1.70001 1.37638 1.24020 1.24140 0.85460 0.78157 0.78536 0.79191 1.19472 1.20696 1.20210 1.61904 1.60072 1.03619 1.02238 1.22182 0.96775 0.90197 1.00890 1.21939 0.90283 0.97679 0.84535 1.47096 1.20070 1.34069 1.29772 1.21508 0.88992 0.77031 0.80998 1.90742 1.31721 1.44166 1.71905 1.22851 0.90713 1.01749 1.01704 1.20413 0.93104 0.96960 0.94174 1.21947 1.03936 0.96811 0.96369 1.19261 0.93753 0.98310 0.96748 1.21059 0.98424 0.98547 0.96940 1.21289 0.92891 1.00390 1.00360 1.21516 0.98123 0.98256 0.95834 1.21559 0.98942 0.96531 0.96628 1.21433 0.90722 0.99311 1.00543 1.21312 0.80323 0.81002 0.84951 1.90738 1.69792 1.28601 1.48895 0.95629 0.94382 0.91425 0.92792 0.95684 0.92385 0.92268 0.91228 0.89911 0.84736 0.81748 0.90793 0.91144 0.86316 0.89044 0.85950 0.83829 0.82636 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.83 8.26 71.98 0.59 -7.24 16 2 C 0.22 11.85 2.27 44.17 0.10 11.95 16 3 H 0.01 0.34 7.80 -2.38 -0.02 0.32 16 4 C -0.51 -29.36 7.97 25.60 0.20 -29.15 16 5 H 0.05 3.06 7.10 -2.91 -0.02 3.04 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 8 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 N -0.55 -25.37 4.80 -913.80 -4.39 -29.76 16 13 C 0.05 2.02 8.53 127.69 1.09 3.11 16 14 C 0.27 10.63 4.63 170.80 0.79 11.42 16 15 N -0.57 -18.77 2.77 -767.01 -2.13 -20.90 16 16 C 0.52 14.69 7.30 87.99 0.64 15.33 16 17 O -0.51 -17.08 15.95 -2.86 -0.05 -17.13 16 18 C -0.13 -2.22 6.16 30.46 0.19 -2.03 16 19 C -0.04 -0.87 0.91 -53.06 -0.05 -0.92 16 20 C -0.13 -1.64 7.09 71.98 0.51 -1.13 16 21 C -0.08 -1.73 4.71 -19.86 -0.09 -1.82 16 22 C -0.13 -3.52 8.87 22.27 0.20 -3.32 16 23 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 24 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.12 -1.74 10.05 22.27 0.22 -1.51 16 26 C -0.10 -1.59 9.05 22.27 0.20 -1.39 16 27 C 0.53 17.11 5.96 87.99 0.52 17.64 16 28 O -0.51 -20.79 17.47 -2.88 -0.05 -20.84 16 29 H 0.02 1.12 7.31 -2.39 -0.02 1.10 16 30 H 0.04 1.82 6.33 -2.38 -0.02 1.81 16 31 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 32 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.02 1.05 6.20 -2.38 -0.01 1.03 16 34 H 0.06 2.28 5.78 -2.39 -0.01 2.26 16 35 H 0.06 2.65 6.86 -2.39 -0.02 2.63 16 36 H 0.07 2.67 7.30 -2.39 -0.02 2.65 16 37 H 0.08 3.50 7.32 -2.39 -0.02 3.48 16 38 H 0.13 2.02 7.58 -2.39 -0.02 2.01 16 39 H 0.16 1.42 7.74 -2.39 -0.02 1.41 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 1.00 7.80 -2.39 -0.02 0.98 16 42 H 0.12 0.54 7.39 -2.39 -0.02 0.52 16 43 H 0.09 2.96 7.75 -2.92 -0.02 2.94 16 44 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 45 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 46 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.16 1.40 6.06 -2.91 -0.02 1.39 16 Total: -1.00 -74.50 373.34 2.66 -71.84 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.98 Total: 15.88 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.02 Total: 7.39 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -6.27 Total: -104.14 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.10 Total: -37.97 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -74.50 2.66 -71.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763326740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.117 kcal (2) G-P(sol) polarization free energy of solvation -74.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds