Wall clock time and date at job start Tue Mar 31 2020 16:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47248 * 2 1 4 4 C 1.46906 * 110.99536 * 72.33769 * 3 2 1 5 5 C 1.53007 * 109.46942 * 199.85864 * 4 3 2 6 6 C 1.46897 * 111.00190 * 196.29184 * 3 2 1 7 7 C 1.52993 * 109.46892 * 75.55273 * 6 3 2 8 8 O 1.45204 * 109.47480 * 64.83747 * 7 6 3 9 9 C 1.34860 * 117.00142 * 176.23305 * 8 7 6 10 10 O 1.21589 * 120.00532 * 5.11197 * 9 8 7 11 11 C 1.46718 * 119.99898 * 185.10906 * 9 8 7 12 12 C 1.36211 * 125.44654 * 185.28644 * 11 9 8 13 13 C 1.41666 * 107.74256 * 180.02562 * 12 11 9 14 14 C 1.40041 * 133.33677 * 180.02562 * 13 12 11 15 15 C 1.36570 * 119.82369 * 179.97438 * 14 13 12 16 16 C 1.38857 * 120.60549 * 359.97438 * 15 14 13 17 17 C 1.37839 * 120.64043 * 0.28528 * 16 15 14 18 18 C 1.39094 * 119.81237 * 359.47373 * 17 16 15 19 19 N 1.37817 * 133.15094 * 180.19074 * 18 17 16 20 20 C 1.36871 * 125.62256 * 0.28398 * 19 18 17 21 21 H 1.08000 * 120.00226 * 137.69847 * 20 19 18 22 22 C 1.39015 * 120.00168 * 317.69536 * 20 19 18 23 23 N 1.31349 * 120.00299 * 158.90218 * 22 20 19 24 24 Si 1.86797 * 119.99837 * 338.90327 * 22 20 19 25 25 H 1.48505 * 109.47193 * 96.35192 * 24 22 20 26 26 H 1.48506 * 109.47333 * 216.34873 * 24 22 20 27 27 H 1.48498 * 109.47559 * 336.35145 * 24 22 20 28 28 H 1.09005 * 109.46862 * 302.98551 * 1 2 3 29 29 H 1.09002 * 109.47118 * 62.98752 * 1 2 3 30 30 H 1.09006 * 109.47306 * 182.98703 * 1 2 3 31 31 H 1.09000 * 109.46949 * 240.00095 * 2 1 3 32 32 H 1.09002 * 109.46884 * 120.00521 * 2 1 3 33 33 H 1.08996 * 109.47555 * 319.85657 * 4 3 2 34 34 H 1.09002 * 109.47364 * 79.86839 * 4 3 2 35 35 H 1.08999 * 109.47135 * 183.85182 * 5 4 3 36 36 H 1.08998 * 109.47170 * 303.86251 * 5 4 3 37 37 H 1.08997 * 109.46716 * 63.85392 * 5 4 3 38 38 H 1.09004 * 109.47259 * 315.55179 * 6 3 2 39 39 H 1.08998 * 109.47140 * 195.55211 * 6 3 2 40 40 H 1.08997 * 109.47671 * 304.83450 * 7 6 3 41 41 H 1.09011 * 109.46890 * 184.83591 * 7 6 3 42 42 H 1.07994 * 126.13441 * 0.04725 * 12 11 9 43 43 H 1.07996 * 120.08638 * 359.97438 * 14 13 12 44 44 H 1.07999 * 119.69451 * 179.97438 * 15 14 13 45 45 H 1.08003 * 119.67967 * 180.02562 * 16 15 14 46 46 H 1.07994 * 120.09643 * 179.65477 * 17 16 15 47 47 H 0.96998 * 120.00181 * 174.99995 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8028 2.0199 1.3069 5 6 1.8486 3.5411 1.1487 6 6 3.4362 1.4425 -0.3847 7 6 3.5632 1.2351 -1.8952 8 8 2.9276 2.3400 -2.5907 9 6 3.0191 2.3503 -3.9361 10 8 3.5323 1.4141 -4.5179 11 6 2.4994 3.4914 -4.6980 12 6 2.4409 3.5736 -6.0563 13 6 1.8774 4.8301 -6.3890 14 6 1.5785 5.4578 -7.6046 15 6 1.0237 6.7057 -7.6063 16 6 0.7517 7.3601 -6.4121 17 6 1.0419 6.7650 -5.2031 18 6 1.6026 5.4924 -5.1756 19 7 1.9912 4.6555 -4.1519 20 6 1.8904 4.9312 -2.8151 21 1 1.5519 4.1677 -2.1303 22 6 2.2236 6.1939 -2.3386 23 7 1.7571 6.6034 -1.1811 24 14 3.3350 7.3083 -3.3447 25 1 2.5046 8.2479 -4.1403 26 1 4.2191 8.0789 -2.4336 27 1 4.1649 6.4844 -4.2599 28 1 -0.3633 0.5595 0.8621 29 1 -0.3633 0.4668 -0.9156 30 1 -0.3634 -1.0263 0.0536 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.8290 1.7244 1.6973 34 1 2.5832 1.7031 1.9988 35 1 1.7561 4.0112 2.1277 36 1 2.7962 3.8308 0.6944 37 1 1.0261 3.8649 0.5110 38 1 3.9866 0.6596 0.1371 39 1 3.8465 2.4159 -0.1159 40 1 3.0766 0.3010 -2.1759 41 1 4.6176 1.1920 -2.1686 42 1 2.7656 2.8165 -6.7547 43 1 1.7861 4.9563 -8.5383 44 1 0.7943 7.1880 -8.5450 45 1 0.3125 8.3465 -6.4308 46 1 0.8319 7.2842 -4.2797 47 1 2.0467 7.4535 -0.8147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772092656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:12 Heat of formation + Delta-G solvation = -15.704307 kcal Electronic energy + Delta-G solvation = -29369.335408 eV Core-core repulsion = 25518.082647 eV Total energy + Delta-G solvation = -3851.252761 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.75573 -39.36431 -37.94220 -36.20667 -35.62863 -33.54249 -31.62926 -31.35939 -31.09601 -29.28814 -28.48912 -27.33085 -24.87285 -23.97167 -22.79722 -22.34487 -21.13427 -20.69577 -20.05778 -19.18759 -18.25870 -17.17309 -16.21396 -16.11773 -15.70977 -15.24815 -15.16261 -14.98350 -14.52441 -14.37258 -13.85711 -13.64699 -13.49645 -13.14500 -13.11892 -12.99564 -12.60204 -12.51074 -12.22655 -12.04261 -11.93258 -11.70144 -11.47555 -11.35295 -11.26681 -11.13746 -10.98006 -10.92899 -10.64405 -10.49891 -10.36614 -10.21973 -10.00712 -9.92936 -9.82927 -9.41094 -8.66625 -8.10754 -7.38100 -6.98897 -6.92281 -4.47131 1.49621 2.49162 2.71483 3.02458 3.13201 3.24516 3.32381 3.91972 3.93805 3.99145 4.18822 4.59355 4.80099 4.99900 5.06862 5.16259 5.32604 5.38174 5.45918 5.52367 5.59311 5.59742 5.72043 5.72363 5.78640 5.83154 5.87013 5.91148 6.00709 6.06409 6.18691 6.23908 6.24107 6.36360 6.41765 6.49230 6.60975 6.76134 6.84077 6.94090 7.00344 7.20834 7.25877 7.26874 7.33072 7.35966 7.60260 7.63770 7.92381 8.21085 8.50750 8.75247 9.04457 10.12395 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.004655 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.612656 B = 6013.906711 C = 7106.693685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 N -0.527 5.527 4 C 0.054 3.946 5 C -0.139 4.139 6 C 0.056 3.944 7 C 0.072 3.928 8 O -0.310 6.310 9 C 0.541 3.459 10 O -0.532 6.532 11 C -0.013 4.013 12 C -0.159 4.159 13 C -0.125 4.125 14 C -0.078 4.078 15 C -0.157 4.157 16 C -0.135 4.135 17 C -0.095 4.095 18 C 0.051 3.949 19 N -0.253 5.253 20 C -0.329 4.329 21 H 0.141 0.859 22 C 0.085 3.915 23 N -0.811 5.811 24 Si 0.858 3.142 25 H -0.247 1.247 26 H -0.282 1.282 27 H -0.256 1.256 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.119 0.881 47 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -5.649 2.613 6.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 N -0.252 5.252 4 C -0.073 4.073 5 C -0.197 4.197 6 C -0.072 4.072 7 C -0.003 4.003 8 O -0.225 6.225 9 C 0.389 3.611 10 O -0.423 6.423 11 C -0.126 4.126 12 C -0.186 4.186 13 C -0.130 4.130 14 C -0.096 4.096 15 C -0.176 4.176 16 C -0.156 4.156 17 C -0.115 4.115 18 C -0.063 4.063 19 N 0.085 4.915 20 C -0.457 4.457 21 H 0.158 0.842 22 C -0.129 4.129 23 N -0.439 5.439 24 Si 0.682 3.318 25 H -0.171 1.171 26 H -0.208 1.208 27 H -0.180 1.180 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.156 0.844 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.137 0.863 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.222 -5.488 2.744 6.139 hybrid contribution 1.182 0.024 0.417 1.254 sum 1.404 -5.464 3.161 6.466 Atomic orbital electron populations 1.21769 0.94850 1.00807 1.02955 1.22127 0.96484 0.89246 1.00111 1.61930 1.17272 1.16409 1.29573 1.22140 1.00068 0.96530 0.88612 1.21680 1.04217 0.92879 1.00879 1.22170 0.89236 1.02577 0.93212 1.22965 0.96994 0.88998 0.91364 1.86959 1.69642 1.46631 1.19279 1.20024 0.75545 0.84605 0.80908 1.90781 1.44252 1.35998 1.71281 1.19181 1.11081 0.90638 0.91663 1.20359 1.08642 0.97588 0.92013 1.17907 1.07112 0.95326 0.92669 1.20148 0.99162 0.94837 0.95499 1.20346 1.04239 0.95910 0.97138 1.20560 1.03619 0.99624 0.91777 1.20207 1.00187 0.92707 0.98372 1.18358 1.05474 0.94891 0.87599 1.40459 1.35792 1.10086 1.05200 1.19802 1.45652 1.00197 0.80051 0.84153 1.25418 0.95096 0.96246 0.96146 1.69743 1.35029 1.20991 1.18173 0.87152 0.82039 0.81934 0.80688 1.17136 1.20805 1.17986 0.92650 0.91613 0.92831 0.91112 0.95369 0.91176 0.95691 0.93458 0.92346 0.90697 0.93104 0.89123 0.91804 0.91510 0.84443 0.87162 0.87306 0.87016 0.86343 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.02 37.16 0.37 -1.38 16 2 C 0.05 0.60 5.50 -3.83 -0.02 0.58 16 3 N -0.53 -7.74 4.27 -234.63 -1.00 -8.74 16 4 C 0.05 0.73 5.52 -3.82 -0.02 0.71 16 5 C -0.14 -2.22 10.06 37.16 0.37 -1.85 16 6 C 0.06 0.79 5.19 -3.83 -0.02 0.77 16 7 C 0.07 1.16 5.67 37.15 0.21 1.38 16 8 O -0.31 -6.47 7.97 -40.93 -0.33 -6.80 16 9 C 0.54 12.15 7.90 34.16 0.27 12.42 16 10 O -0.53 -12.03 16.64 -19.33 -0.32 -12.35 16 11 C -0.01 -0.30 6.76 -82.27 -0.56 -0.86 16 12 C -0.16 -3.53 10.55 -39.00 -0.41 -3.94 16 13 C -0.13 -2.78 6.16 -106.89 -0.66 -3.44 16 14 C -0.08 -1.46 10.06 -39.51 -0.40 -1.86 16 15 C -0.16 -2.78 9.97 -39.95 -0.40 -3.18 16 16 C -0.14 -2.57 10.02 -39.50 -0.40 -2.97 16 17 C -0.10 -2.11 6.84 -39.41 -0.27 -2.38 16 18 C 0.05 1.22 5.20 -83.83 -0.44 0.79 16 19 N -0.25 -6.27 2.41 -56.10 -0.14 -6.41 16 20 C -0.33 -8.40 9.14 -15.01 -0.14 -8.53 16 21 H 0.14 3.79 7.02 -52.49 -0.37 3.42 16 22 C 0.09 2.12 4.86 -17.47 -0.08 2.04 16 23 N -0.81 -20.08 13.95 55.50 0.77 -19.30 16 24 Si 0.86 19.89 24.39 -169.99 -4.15 15.74 16 25 H -0.25 -5.48 5.68 56.52 0.32 -5.15 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.05 0.65 6.48 -51.93 -0.34 0.31 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.88 6.46 -51.93 -0.34 0.54 16 32 H 0.03 0.31 8.05 -51.93 -0.42 -0.11 16 33 H 0.07 0.89 6.23 -51.93 -0.32 0.57 16 34 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.03 6.69 -51.93 -0.35 0.68 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 39 H 0.09 1.37 6.47 -51.93 -0.34 1.04 16 40 H 0.06 0.99 6.64 -51.93 -0.34 0.65 16 41 H 0.07 1.02 8.12 -51.92 -0.42 0.59 16 42 H 0.14 2.73 8.06 -52.49 -0.42 2.31 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 46 H 0.12 2.68 5.86 -52.49 -0.31 2.37 16 47 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -27.63 376.06 -9.04 -36.67 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.97 Total: 7.23 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.58 Total: -11.71 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.36 Total: -34.45 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.65 Total: -19.15 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.15 Total: 15.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.63 -9.04 -36.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772092656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.964 kcal (2) G-P(sol) polarization free energy of solvation -27.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds