Wall clock time and date at job start Tue Mar 31 2020 16:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47248 * 2 1 4 4 C 1.46906 * 110.99536 * 72.33769 * 3 2 1 5 5 C 1.53007 * 109.46942 * 199.85864 * 4 3 2 6 6 C 1.46897 * 111.00190 * 196.29184 * 3 2 1 7 7 C 1.52993 * 109.46892 * 75.55273 * 6 3 2 8 8 O 1.45204 * 109.47480 * 64.83747 * 7 6 3 9 9 C 1.34860 * 117.00142 * 176.23305 * 8 7 6 10 10 O 1.21589 * 120.00532 * 5.11197 * 9 8 7 11 11 C 1.46718 * 119.99898 * 185.10906 * 9 8 7 12 12 C 1.36211 * 125.44654 * 185.28644 * 11 9 8 13 13 C 1.41666 * 107.74256 * 180.02562 * 12 11 9 14 14 C 1.40041 * 133.33677 * 180.02562 * 13 12 11 15 15 C 1.36570 * 119.82369 * 179.97438 * 14 13 12 16 16 C 1.38857 * 120.60549 * 359.97438 * 15 14 13 17 17 C 1.37839 * 120.64043 * 0.28528 * 16 15 14 18 18 C 1.39094 * 119.81237 * 359.47373 * 17 16 15 19 19 N 1.37817 * 133.15094 * 180.19074 * 18 17 16 20 20 C 1.36871 * 125.62256 * 0.28398 * 19 18 17 21 21 H 1.08000 * 120.00226 * 137.69847 * 20 19 18 22 22 C 1.39015 * 120.00168 * 317.69536 * 20 19 18 23 23 N 1.31349 * 120.00299 * 158.90218 * 22 20 19 24 24 Si 1.86797 * 119.99837 * 338.90327 * 22 20 19 25 25 H 1.48505 * 109.47193 * 96.35192 * 24 22 20 26 26 H 1.48506 * 109.47333 * 216.34873 * 24 22 20 27 27 H 1.48498 * 109.47559 * 336.35145 * 24 22 20 28 28 H 1.09005 * 109.46862 * 302.98551 * 1 2 3 29 29 H 1.09002 * 109.47118 * 62.98752 * 1 2 3 30 30 H 1.09006 * 109.47306 * 182.98703 * 1 2 3 31 31 H 1.09000 * 109.46949 * 240.00095 * 2 1 3 32 32 H 1.09002 * 109.46884 * 120.00521 * 2 1 3 33 33 H 1.08996 * 109.47555 * 319.85657 * 4 3 2 34 34 H 1.09002 * 109.47364 * 79.86839 * 4 3 2 35 35 H 1.08999 * 109.47135 * 183.85182 * 5 4 3 36 36 H 1.08998 * 109.47170 * 303.86251 * 5 4 3 37 37 H 1.08997 * 109.46716 * 63.85392 * 5 4 3 38 38 H 1.09004 * 109.47259 * 315.55179 * 6 3 2 39 39 H 1.08998 * 109.47140 * 195.55211 * 6 3 2 40 40 H 1.08997 * 109.47671 * 304.83450 * 7 6 3 41 41 H 1.09011 * 109.46890 * 184.83591 * 7 6 3 42 42 H 1.07994 * 126.13441 * 0.04725 * 12 11 9 43 43 H 1.07996 * 120.08638 * 359.97438 * 14 13 12 44 44 H 1.07999 * 119.69451 * 179.97438 * 15 14 13 45 45 H 1.08003 * 119.67967 * 180.02562 * 16 15 14 46 46 H 1.07994 * 120.09643 * 179.65477 * 17 16 15 47 47 H 0.96998 * 120.00181 * 174.99995 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8028 2.0199 1.3069 5 6 1.8486 3.5411 1.1487 6 6 3.4362 1.4425 -0.3847 7 6 3.5632 1.2351 -1.8952 8 8 2.9276 2.3400 -2.5907 9 6 3.0191 2.3503 -3.9361 10 8 3.5323 1.4141 -4.5179 11 6 2.4994 3.4914 -4.6980 12 6 2.4409 3.5736 -6.0563 13 6 1.8774 4.8301 -6.3890 14 6 1.5785 5.4578 -7.6046 15 6 1.0237 6.7057 -7.6063 16 6 0.7517 7.3601 -6.4121 17 6 1.0419 6.7650 -5.2031 18 6 1.6026 5.4924 -5.1756 19 7 1.9912 4.6555 -4.1519 20 6 1.8904 4.9312 -2.8151 21 1 1.5519 4.1677 -2.1303 22 6 2.2236 6.1939 -2.3386 23 7 1.7571 6.6034 -1.1811 24 14 3.3350 7.3083 -3.3447 25 1 2.5046 8.2479 -4.1403 26 1 4.2191 8.0789 -2.4336 27 1 4.1649 6.4844 -4.2599 28 1 -0.3633 0.5595 0.8621 29 1 -0.3633 0.4668 -0.9156 30 1 -0.3634 -1.0263 0.0536 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.8290 1.7244 1.6973 34 1 2.5832 1.7031 1.9988 35 1 1.7561 4.0112 2.1277 36 1 2.7962 3.8308 0.6944 37 1 1.0261 3.8649 0.5110 38 1 3.9866 0.6596 0.1371 39 1 3.8465 2.4159 -0.1159 40 1 3.0766 0.3010 -2.1759 41 1 4.6176 1.1920 -2.1686 42 1 2.7656 2.8165 -6.7547 43 1 1.7861 4.9563 -8.5383 44 1 0.7943 7.1880 -8.5450 45 1 0.3125 8.3465 -6.4308 46 1 0.8319 7.2842 -4.2797 47 1 2.0467 7.4535 -0.8147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772092656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:11 Heat of formation + Delta-G solvation = -29.819959 kcal Electronic energy + Delta-G solvation = -29369.947509 eV Core-core repulsion = 25518.082647 eV Total energy + Delta-G solvation = -3851.864862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -42.46170 -40.98715 -39.13769 -37.80217 -37.25226 -35.36316 -33.10101 -32.71289 -32.36356 -30.89263 -30.11185 -28.59358 -26.69117 -25.53448 -23.87917 -23.66112 -22.79296 -22.26087 -21.24826 -20.90886 -20.03150 -18.82762 -17.71166 -17.64927 -17.35642 -16.75096 -16.47296 -16.40408 -16.17653 -15.60216 -15.48865 -15.09368 -14.94922 -14.76713 -14.70122 -14.31891 -14.22435 -13.90599 -13.86204 -13.66869 -13.13433 -13.04682 -12.87236 -12.79090 -12.61097 -12.47776 -12.40349 -12.34144 -12.27904 -11.98694 -11.88619 -11.71220 -11.48874 -11.46534 -11.38540 -11.22984 -10.40938 -9.16787 -9.05434 -8.79933 -8.67498 -6.38142 -0.16823 0.88902 1.03128 1.18659 1.26017 1.34801 1.78095 2.06145 2.17979 2.47010 2.77047 2.89370 3.15004 3.76327 3.94203 3.99868 4.03657 4.07070 4.25520 4.28020 4.30034 4.34395 4.37047 4.47316 4.57456 4.58108 4.62429 4.66367 4.70157 4.73901 4.79470 4.88609 4.98164 5.03178 5.09393 5.11388 5.16549 5.26853 5.33933 5.39505 5.44123 5.56327 5.69560 5.80509 5.89752 5.98199 6.16073 6.17829 6.26171 6.42024 6.75636 6.94664 7.22915 8.29590 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.004655 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.612656 B = 6013.906711 C = 7106.693685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 N -0.557 5.557 4 C 0.062 3.938 5 C -0.128 4.128 6 C 0.063 3.937 7 C 0.065 3.935 8 O -0.325 6.325 9 C 0.540 3.460 10 O -0.540 6.540 11 C -0.041 4.041 12 C -0.152 4.152 13 C -0.144 4.144 14 C -0.073 4.073 15 C -0.150 4.150 16 C -0.113 4.113 17 C -0.138 4.138 18 C 0.035 3.965 19 N -0.277 5.277 20 C -0.342 4.342 21 H 0.110 0.890 22 C 0.065 3.935 23 N -0.839 5.839 24 Si 0.899 3.101 25 H -0.229 1.229 26 H -0.274 1.274 27 H -0.286 1.286 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.159 0.841 43 H 0.148 0.852 44 H 0.157 0.843 45 H 0.146 0.854 46 H 0.104 0.896 47 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -5.629 0.810 5.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 N -0.283 5.283 4 C -0.065 4.065 5 C -0.186 4.186 6 C -0.065 4.065 7 C -0.009 4.009 8 O -0.240 6.240 9 C 0.388 3.612 10 O -0.433 6.433 11 C -0.153 4.153 12 C -0.179 4.179 13 C -0.149 4.149 14 C -0.092 4.092 15 C -0.169 4.169 16 C -0.133 4.133 17 C -0.158 4.158 18 C -0.079 4.079 19 N 0.059 4.941 20 C -0.469 4.469 21 H 0.128 0.872 22 C -0.147 4.147 23 N -0.469 5.469 24 Si 0.723 3.277 25 H -0.153 1.153 26 H -0.200 1.200 27 H -0.211 1.211 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.177 0.823 43 H 0.165 0.835 44 H 0.175 0.825 45 H 0.164 0.836 46 H 0.122 0.878 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.227 -5.461 0.962 5.549 hybrid contribution 1.112 -0.028 0.763 1.349 sum 1.339 -5.488 1.725 5.907 Atomic orbital electron populations 1.21749 0.94818 1.01982 1.01501 1.22162 0.96475 0.88050 1.01105 1.61842 1.17746 1.18192 1.30488 1.22051 1.01495 0.94281 0.88697 1.21552 1.01138 0.95405 1.00520 1.22132 0.89607 1.02918 0.91828 1.23338 0.97250 0.87965 0.92369 1.86963 1.69913 1.48501 1.18636 1.20004 0.75313 0.84353 0.81513 1.90744 1.44759 1.36188 1.71577 1.19647 1.11975 0.90901 0.92783 1.20727 1.07299 0.98152 0.91705 1.18335 1.07620 0.95366 0.93584 1.20636 0.97749 0.95278 0.95509 1.20887 1.02266 0.95255 0.98473 1.21114 1.00559 1.00585 0.91034 1.20329 1.03136 0.92917 0.99374 1.18874 1.05420 0.95550 0.88038 1.40455 1.37750 1.10928 1.04994 1.19403 1.47047 0.99870 0.80577 0.87244 1.25707 0.95542 0.96764 0.96654 1.69769 1.36271 1.21748 1.19092 0.86576 0.80718 0.80850 0.79548 1.15259 1.20022 1.21140 0.92509 0.94454 0.90476 0.91301 0.92932 0.90040 0.93361 0.91804 0.94649 0.94744 0.89464 0.90766 0.91089 0.90575 0.82320 0.83478 0.82501 0.83600 0.87834 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 10.02 71.98 0.72 -2.65 16 2 C 0.05 1.17 5.50 86.30 0.47 1.65 16 3 N -0.56 -16.52 4.27 -896.22 -3.83 -20.35 16 4 C 0.06 1.67 5.52 86.30 0.48 2.15 16 5 C -0.13 -4.36 10.06 71.98 0.72 -3.64 16 6 C 0.06 1.78 5.19 86.30 0.45 2.23 16 7 C 0.06 2.15 5.67 71.98 0.41 2.56 16 8 O -0.33 -14.35 7.97 -57.74 -0.46 -14.81 16 9 C 0.54 25.22 7.90 70.04 0.55 25.77 16 10 O -0.54 -24.85 16.64 19.54 0.33 -24.52 16 11 C -0.04 -2.02 6.76 39.87 0.27 -1.75 16 12 C -0.15 -6.69 10.55 22.64 0.24 -6.45 16 13 C -0.14 -6.22 6.16 -21.33 -0.13 -6.36 16 14 C -0.07 -2.47 10.06 22.32 0.22 -2.25 16 15 C -0.15 -4.55 9.97 22.03 0.22 -4.33 16 16 C -0.11 -3.89 10.02 22.32 0.22 -3.67 16 17 C -0.14 -6.02 6.84 22.38 0.15 -5.87 16 18 C 0.04 1.69 5.20 39.07 0.20 1.89 16 19 N -0.28 -14.36 2.41 -331.41 -0.80 -15.16 16 20 C -0.34 -18.61 9.14 84.09 0.77 -17.85 16 21 H 0.11 6.49 7.02 -2.91 -0.02 6.47 16 22 C 0.07 3.41 4.86 84.95 0.41 3.82 16 23 N -0.84 -43.84 13.95 21.67 0.30 -43.54 16 24 Si 0.90 42.25 24.39 68.60 1.67 43.92 16 25 H -0.23 -9.96 5.68 99.48 0.57 -9.39 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 28 H 0.06 1.30 6.48 -2.38 -0.02 1.28 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.07 1.65 6.46 -2.39 -0.02 1.63 16 32 H 0.05 1.01 8.05 -2.39 -0.02 0.99 16 33 H 0.08 2.01 6.23 -2.39 -0.01 2.00 16 34 H 0.05 1.10 8.00 -2.39 -0.02 1.08 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.03 1.33 6.69 -2.39 -0.02 1.32 16 37 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.84 8.00 -2.38 -0.02 1.82 16 39 H 0.07 2.35 6.47 -2.39 -0.02 2.33 16 40 H 0.07 2.23 6.64 -2.39 -0.02 2.21 16 41 H 0.08 2.34 8.12 -2.38 -0.02 2.33 16 42 H 0.16 6.11 8.06 -2.91 -0.02 6.09 16 43 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 44 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 45 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 46 H 0.10 4.76 5.86 -2.91 -0.02 4.74 16 47 H 0.29 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -64.25 376.06 4.43 -59.82 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.83 Total: 29.36 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 6.39 Total: -14.73 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -4.32 Total: -79.04 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.13 Total: -39.33 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.67 Total: 43.92 kcal Total: -64.25 4.43 -59.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772092656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.000 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds