Wall clock time and date at job start Tue Mar 31 2020 15:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47087 * 2 1 4 4 C 1.52993 * 109.46991 * 120.00162 * 2 1 3 5 5 N 1.46506 * 109.47443 * 175.00212 * 4 2 1 6 6 C 1.46765 * 124.35278 * 89.99311 * 5 4 2 7 7 C 1.54475 * 105.47653 * 197.02343 * 6 5 4 8 8 C 1.54627 * 101.76310 * 334.58593 * 7 6 5 9 9 C 1.34419 * 124.34916 * 269.70045 * 5 4 2 10 10 O 1.21281 * 124.93982 * 359.57105 * 9 5 4 11 11 N 1.46506 * 109.47068 * 239.99837 * 2 1 3 12 12 C 1.34776 * 119.99395 * 84.72894 * 11 2 1 13 13 O 1.21280 * 120.00689 * 0.27200 * 12 11 2 14 14 C 1.50708 * 119.99505 * 180.27386 * 12 11 2 15 15 C 1.50700 * 109.47005 * 179.97438 * 14 12 11 16 16 C 1.37635 * 120.13019 * 265.00407 * 15 14 12 17 17 C 1.38609 * 120.25081 * 179.97438 * 16 15 14 18 18 C 1.38662 * 120.50217 * 0.02562 * 17 16 15 19 19 C 1.37599 * 120.24495 * 0.02562 * 18 17 16 20 20 C 1.40695 * 120.12452 * 84.72553 * 15 14 12 21 21 C 1.41401 * 120.24464 * 359.97438 * 20 15 14 22 22 H 1.07994 * 119.99887 * 333.89207 * 21 20 15 23 23 C 1.39953 * 119.99764 * 153.89222 * 21 20 15 24 24 N 1.30819 * 119.99905 * 343.72107 * 23 21 20 25 25 Si 1.86796 * 119.99586 * 163.71996 * 23 21 20 26 26 H 1.48502 * 109.47309 * 60.00454 * 25 23 21 27 27 H 1.48507 * 109.46717 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47350 * 299.99935 * 25 23 21 29 29 H 1.09003 * 109.46772 * 60.00345 * 1 2 3 30 30 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47301 * 300.00133 * 1 2 3 32 32 H 1.09004 * 109.47065 * 295.00033 * 4 2 1 33 33 H 1.09001 * 109.47706 * 55.00281 * 4 2 1 34 34 H 1.09000 * 110.24174 * 316.02523 * 6 5 4 35 35 H 1.08999 * 110.24215 * 77.93303 * 6 5 4 36 36 H 1.08995 * 110.97167 * 92.70220 * 7 6 5 37 37 H 1.08996 * 110.97017 * 216.46760 * 7 6 5 38 38 H 1.09003 * 110.49020 * 143.47952 * 8 7 6 39 39 H 1.09004 * 110.48745 * 265.98758 * 8 7 6 40 40 H 0.96995 * 120.00143 * 264.99511 * 11 2 1 41 41 H 1.08992 * 109.46986 * 299.99602 * 14 12 11 42 42 H 1.08997 * 109.46862 * 60.00006 * 14 12 11 43 43 H 1.07998 * 119.87579 * 359.97438 * 16 15 14 44 44 H 1.08003 * 119.75420 * 179.97438 * 17 16 15 45 45 H 1.07995 * 119.88126 * 180.02562 * 18 17 16 46 46 H 1.08004 * 120.12528 * 179.97438 * 19 18 17 47 47 H 0.97001 * 119.99732 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.4250 0.1771 1.7305 7 6 5.7895 -0.1232 1.0716 8 6 5.6567 -1.6284 0.7436 9 6 4.1648 -1.8571 0.6405 10 8 3.6442 -2.8278 0.1329 11 7 2.0184 -0.6907 -1.1962 12 6 2.1419 -0.0196 -2.3585 13 8 1.8535 1.1572 -2.4130 14 6 2.6384 -0.7316 -3.5905 15 6 2.6834 0.2353 -4.7456 16 6 1.6240 0.3162 -5.6205 17 6 1.6625 1.2050 -6.6834 18 6 2.7662 2.0214 -6.8786 19 6 3.8371 1.9567 -6.0170 20 6 3.8060 1.0629 -4.9303 21 6 4.8975 0.9931 -4.0341 22 1 4.7421 0.6597 -3.0188 23 6 6.1793 1.3562 -4.4630 24 7 6.4388 1.4511 -5.7416 25 14 7.5195 1.7052 -3.2094 26 1 7.7483 0.4952 -2.3794 27 1 8.7756 2.0654 -3.9151 28 1 7.1005 2.8317 -2.3374 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -0.1583 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 4.0904 1.1799 1.4648 35 1 4.4978 0.0789 2.8136 36 1 5.9216 0.4638 0.1628 37 1 6.6073 0.0531 1.7704 38 1 6.1469 -1.8575 -0.2026 39 1 6.0787 -2.2326 1.5468 40 1 2.2491 -1.6318 -1.1526 41 1 3.6383 -1.1237 -3.4053 42 1 1.9645 -1.5537 -3.8313 43 1 0.7594 -0.3152 -5.4783 44 1 0.8269 1.2616 -7.3653 45 1 2.7854 2.7106 -7.7098 46 1 4.6959 2.5932 -6.1711 47 1 7.3271 1.7032 -6.0388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777362800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:27 Heat of formation + Delta-G solvation = -61.143787 kcal Electronic energy + Delta-G solvation = -29398.590749 eV Core-core repulsion = 25545.367584 eV Total energy + Delta-G solvation = -3853.223165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.58019 -39.09430 -37.37361 -36.48802 -35.49693 -33.57030 -32.39295 -31.66093 -30.31057 -29.37877 -27.65229 -26.65371 -26.32982 -24.92818 -22.15097 -21.81715 -20.86070 -20.15228 -19.60337 -19.15308 -17.15325 -16.91888 -16.83926 -16.32945 -15.69334 -15.26842 -15.21634 -14.62658 -14.42514 -13.90454 -13.82162 -13.67849 -13.55687 -13.27740 -13.10565 -12.96803 -12.61400 -12.54098 -12.42941 -12.14907 -11.84756 -11.62180 -11.56377 -11.52048 -11.23627 -11.13163 -11.06494 -10.93493 -10.86856 -10.64217 -10.37186 -9.84478 -9.42423 -9.31551 -9.12259 -9.05263 -8.85715 -8.54792 -7.24612 -7.22474 -6.68715 -4.28589 2.52309 2.82261 2.87517 3.03049 3.05485 3.06800 3.30547 3.46391 3.78497 3.94405 4.25796 4.38265 4.68018 4.71049 4.77643 4.90330 5.01985 5.20795 5.26144 5.32581 5.42669 5.51953 5.59152 5.63590 5.72127 5.75093 5.89519 5.93429 6.02025 6.13527 6.20258 6.28271 6.36121 6.41201 6.53480 6.57691 6.87066 6.95730 7.02805 7.13515 7.35926 7.48612 7.70530 7.97473 8.06079 8.11866 8.17164 8.19609 8.37832 8.70335 8.97113 9.00287 9.07818 10.25689 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.005369 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.101035 B = 5213.896103 C = 7166.389835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 H 0.087 0.913 4 C 0.118 3.882 5 N -0.616 5.616 6 C 0.102 3.898 7 C -0.136 4.136 8 C -0.157 4.157 9 C 0.523 3.477 10 O -0.534 6.534 11 N -0.738 5.738 12 C 0.518 3.482 13 O -0.525 6.525 14 C -0.071 4.071 15 C -0.176 4.176 16 C -0.082 4.082 17 C -0.239 4.239 18 C -0.108 4.108 19 C -0.159 4.159 20 C 0.129 3.871 21 C -0.454 4.454 22 H 0.072 0.928 23 C 0.076 3.924 24 N -0.796 5.796 25 Si 0.900 3.100 26 H -0.265 1.265 27 H -0.279 1.279 28 H -0.264 1.264 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.402 0.598 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -3.941 16.380 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.105 0.895 4 C -0.004 4.004 5 N -0.350 5.350 6 C -0.021 4.021 7 C -0.173 4.173 8 C -0.197 4.197 9 C 0.311 3.689 10 O -0.411 6.411 11 N -0.394 5.394 12 C 0.305 3.695 13 O -0.400 6.400 14 C -0.111 4.111 15 C -0.178 4.178 16 C -0.100 4.100 17 C -0.258 4.258 18 C -0.127 4.127 19 C -0.178 4.178 20 C 0.126 3.874 21 C -0.484 4.484 22 H 0.090 0.910 23 C -0.141 4.141 24 N -0.422 5.422 25 Si 0.724 3.276 26 H -0.189 1.189 27 H -0.204 1.204 28 H -0.189 1.189 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.238 0.762 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.043 -3.535 15.911 16.426 hybrid contribution 0.749 -0.128 0.539 0.932 sum -1.294 -3.663 16.450 16.902 Atomic orbital electron populations 1.22122 0.95044 1.02067 1.02693 1.21252 0.94036 0.98021 0.84911 0.89506 1.21760 0.78625 1.02263 0.97790 1.48210 1.05948 1.22161 1.58657 1.22097 0.89237 0.92848 0.97874 1.22623 0.96674 0.95581 1.02460 1.22330 0.94239 0.97816 1.05282 1.20903 0.89980 0.81669 0.76346 1.90683 1.74485 1.31009 1.44940 1.46309 1.69377 1.14493 1.09263 1.21163 0.76505 0.87584 0.84231 1.90653 1.48435 1.15975 1.84906 1.20249 1.02022 0.97433 0.91381 1.19079 0.98224 1.02207 0.98311 1.20298 0.96087 0.98161 0.95503 1.20299 0.99295 1.04390 1.01821 1.20668 0.94667 0.98774 0.98562 1.21281 0.97892 1.01047 0.97629 1.17328 0.90731 0.88010 0.91291 1.19398 0.91497 1.39392 0.98148 0.91012 1.25868 0.99912 0.92815 0.95469 1.69813 1.22559 1.34750 1.15104 0.86508 0.79568 0.79921 0.81584 1.18948 1.20359 1.18890 0.91436 0.92498 0.91985 0.89126 0.89534 0.90161 0.91103 0.89452 0.89189 0.87632 0.88049 0.76226 0.88848 0.90816 0.89833 0.89721 0.89638 0.86569 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 37.16 0.35 -1.53 16 2 C 0.12 1.65 2.88 -67.93 -0.20 1.46 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 4 C 0.12 1.21 5.54 -4.04 -0.02 1.19 16 5 N -0.62 -6.94 2.80 -172.41 -0.48 -7.43 16 6 C 0.10 0.91 7.35 -3.12 -0.02 0.89 16 7 C -0.14 -1.28 7.18 -25.10 -0.18 -1.46 16 8 C -0.16 -1.67 6.86 -26.74 -0.18 -1.85 16 9 C 0.52 6.99 7.30 -10.86 -0.08 6.91 16 10 O -0.53 -8.75 15.89 5.56 0.09 -8.67 16 11 N -0.74 -12.07 4.53 -53.80 -0.24 -12.32 16 12 C 0.52 10.67 7.40 -10.98 -0.08 10.59 16 13 O -0.53 -12.78 15.70 5.56 0.09 -12.69 16 14 C -0.07 -1.52 5.18 -29.03 -0.15 -1.67 16 15 C -0.18 -4.43 4.43 -103.91 -0.46 -4.89 16 16 C -0.08 -1.98 9.66 -39.66 -0.38 -2.36 16 17 C -0.24 -5.74 10.05 -39.29 -0.39 -6.14 16 18 C -0.11 -2.71 10.02 -39.66 -0.40 -3.11 16 19 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 20 C 0.13 3.53 5.56 -106.82 -0.59 2.93 16 21 C -0.45 -12.11 8.14 -37.74 -0.31 -12.42 16 22 H 0.07 1.87 6.67 -52.49 -0.35 1.52 16 23 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 24 N -0.80 -20.79 10.95 55.55 0.61 -20.18 16 25 Si 0.90 18.50 29.59 -169.99 -5.03 13.47 16 26 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 27 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 28 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.90 7.92 -51.93 -0.41 0.49 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.40 6.44 6.40 -40.82 -0.26 6.18 16 41 H 0.09 2.02 7.08 -51.93 -0.37 1.65 16 42 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 43 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.08 1.81 8.06 -52.48 -0.42 1.38 16 45 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 46 H 0.12 3.24 6.21 -52.48 -0.33 2.92 16 47 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -32.73 385.45 -9.85 -42.58 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -7.16 Total: 13.72 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -3.53 Total: -14.30 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.12 Total: -39.92 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.18 Total: -21.36 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.73 -9.85 -42.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777362800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.562 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds