Wall clock time and date at job start Tue Mar 31 2020 15:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47087 * 2 1 4 4 C 1.52993 * 109.46991 * 120.00162 * 2 1 3 5 5 N 1.46506 * 109.47443 * 175.00212 * 4 2 1 6 6 C 1.46765 * 124.35278 * 89.99311 * 5 4 2 7 7 C 1.54475 * 105.47653 * 197.02343 * 6 5 4 8 8 C 1.54627 * 101.76310 * 334.58593 * 7 6 5 9 9 C 1.34419 * 124.34916 * 269.70045 * 5 4 2 10 10 O 1.21281 * 124.93982 * 359.57105 * 9 5 4 11 11 N 1.46506 * 109.47068 * 239.99837 * 2 1 3 12 12 C 1.34776 * 119.99395 * 84.72894 * 11 2 1 13 13 O 1.21280 * 120.00689 * 0.27200 * 12 11 2 14 14 C 1.50708 * 119.99505 * 180.27386 * 12 11 2 15 15 C 1.50700 * 109.47005 * 179.97438 * 14 12 11 16 16 C 1.37635 * 120.13019 * 265.00407 * 15 14 12 17 17 C 1.38609 * 120.25081 * 179.97438 * 16 15 14 18 18 C 1.38662 * 120.50217 * 0.02562 * 17 16 15 19 19 C 1.37599 * 120.24495 * 0.02562 * 18 17 16 20 20 C 1.40695 * 120.12452 * 84.72553 * 15 14 12 21 21 C 1.41401 * 120.24464 * 359.97438 * 20 15 14 22 22 H 1.07994 * 119.99887 * 333.89207 * 21 20 15 23 23 C 1.39953 * 119.99764 * 153.89222 * 21 20 15 24 24 N 1.30819 * 119.99905 * 343.72107 * 23 21 20 25 25 Si 1.86796 * 119.99586 * 163.71996 * 23 21 20 26 26 H 1.48502 * 109.47309 * 60.00454 * 25 23 21 27 27 H 1.48507 * 109.46717 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47350 * 299.99935 * 25 23 21 29 29 H 1.09003 * 109.46772 * 60.00345 * 1 2 3 30 30 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47301 * 300.00133 * 1 2 3 32 32 H 1.09004 * 109.47065 * 295.00033 * 4 2 1 33 33 H 1.09001 * 109.47706 * 55.00281 * 4 2 1 34 34 H 1.09000 * 110.24174 * 316.02523 * 6 5 4 35 35 H 1.08999 * 110.24215 * 77.93303 * 6 5 4 36 36 H 1.08995 * 110.97167 * 92.70220 * 7 6 5 37 37 H 1.08996 * 110.97017 * 216.46760 * 7 6 5 38 38 H 1.09003 * 110.49020 * 143.47952 * 8 7 6 39 39 H 1.09004 * 110.48745 * 265.98758 * 8 7 6 40 40 H 0.96995 * 120.00143 * 264.99511 * 11 2 1 41 41 H 1.08992 * 109.46986 * 299.99602 * 14 12 11 42 42 H 1.08997 * 109.46862 * 60.00006 * 14 12 11 43 43 H 1.07998 * 119.87579 * 359.97438 * 16 15 14 44 44 H 1.08003 * 119.75420 * 179.97438 * 17 16 15 45 45 H 1.07995 * 119.88126 * 180.02562 * 18 17 16 46 46 H 1.08004 * 120.12528 * 179.97438 * 19 18 17 47 47 H 0.97001 * 119.99732 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.4250 0.1771 1.7305 7 6 5.7895 -0.1232 1.0716 8 6 5.6567 -1.6284 0.7436 9 6 4.1648 -1.8571 0.6405 10 8 3.6442 -2.8278 0.1329 11 7 2.0184 -0.6907 -1.1962 12 6 2.1419 -0.0196 -2.3585 13 8 1.8535 1.1572 -2.4130 14 6 2.6384 -0.7316 -3.5905 15 6 2.6834 0.2353 -4.7456 16 6 1.6240 0.3162 -5.6205 17 6 1.6625 1.2050 -6.6834 18 6 2.7662 2.0214 -6.8786 19 6 3.8371 1.9567 -6.0170 20 6 3.8060 1.0629 -4.9303 21 6 4.8975 0.9931 -4.0341 22 1 4.7421 0.6597 -3.0188 23 6 6.1793 1.3562 -4.4630 24 7 6.4388 1.4511 -5.7416 25 14 7.5195 1.7052 -3.2094 26 1 7.7483 0.4952 -2.3794 27 1 8.7756 2.0654 -3.9151 28 1 7.1005 2.8317 -2.3374 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -0.1583 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 4.0904 1.1799 1.4648 35 1 4.4978 0.0789 2.8136 36 1 5.9216 0.4638 0.1628 37 1 6.6073 0.0531 1.7704 38 1 6.1469 -1.8575 -0.2026 39 1 6.0787 -2.2326 1.5468 40 1 2.2491 -1.6318 -1.1526 41 1 3.6383 -1.1237 -3.4053 42 1 1.9645 -1.5537 -3.8313 43 1 0.7594 -0.3152 -5.4783 44 1 0.8269 1.2616 -7.3653 45 1 2.7854 2.7106 -7.7098 46 1 4.6959 2.5932 -6.1711 47 1 7.3271 1.7032 -6.0388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777362800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:26 Heat of formation + Delta-G solvation = -80.696028 kcal Electronic energy + Delta-G solvation = -29399.438598 eV Core-core repulsion = 25545.367584 eV Total energy + Delta-G solvation = -3854.071014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57804 -40.65138 -39.18809 -37.54035 -36.72661 -35.50989 -33.75595 -33.16066 -31.58055 -31.31175 -28.47315 -28.42171 -27.23326 -26.85581 -23.25401 -22.86221 -22.80344 -21.64952 -21.01818 -20.40111 -19.07843 -18.11807 -17.78332 -17.69146 -17.25881 -16.72749 -16.34112 -16.22542 -16.09215 -15.46085 -15.16314 -14.84070 -14.72366 -14.57365 -14.53899 -14.37141 -14.00056 -13.64789 -13.51462 -13.38421 -13.31886 -13.02568 -12.93433 -12.79815 -12.76339 -12.69541 -12.48869 -12.32380 -12.17076 -12.11989 -11.86266 -11.34940 -11.23703 -11.02791 -10.87126 -10.72019 -10.07480 -9.66318 -9.24330 -9.18003 -8.59548 -6.30059 0.98829 1.11894 1.33048 1.45384 1.52947 1.53552 1.81134 2.04333 2.19819 2.41423 2.78001 3.43752 3.61857 3.71822 3.78184 4.01451 4.08226 4.11418 4.15798 4.29476 4.34333 4.40256 4.49632 4.55789 4.60362 4.67309 4.68532 4.70489 4.74771 4.77515 4.89129 4.98239 5.02386 5.06200 5.16908 5.18709 5.23699 5.35198 5.50726 5.53020 5.68681 5.75365 6.02239 6.10623 6.14802 6.19380 6.41153 6.61604 6.72524 6.98416 7.09526 7.14090 7.42790 8.36949 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.005369 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.101035 B = 5213.896103 C = 7166.389835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.119 3.881 3 H 0.066 0.934 4 C 0.122 3.878 5 N -0.616 5.616 6 C 0.100 3.900 7 C -0.133 4.133 8 C -0.156 4.156 9 C 0.508 3.492 10 O -0.574 6.574 11 N -0.723 5.723 12 C 0.521 3.479 13 O -0.569 6.569 14 C -0.070 4.070 15 C -0.187 4.187 16 C -0.093 4.093 17 C -0.242 4.242 18 C -0.116 4.116 19 C -0.191 4.191 20 C 0.096 3.904 21 C -0.479 4.479 22 H 0.066 0.934 23 C 0.033 3.967 24 N -0.827 5.827 25 Si 0.968 3.032 26 H -0.246 1.246 27 H -0.268 1.268 28 H -0.264 1.264 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.405 0.595 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -4.430 19.175 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.013 3.987 3 H 0.084 0.916 4 C 0.000 4.000 5 N -0.349 5.349 6 C -0.022 4.022 7 C -0.171 4.171 8 C -0.196 4.196 9 C 0.297 3.703 10 O -0.455 6.455 11 N -0.377 5.377 12 C 0.309 3.691 13 O -0.447 6.447 14 C -0.110 4.110 15 C -0.189 4.189 16 C -0.111 4.111 17 C -0.261 4.261 18 C -0.135 4.135 19 C -0.211 4.211 20 C 0.094 3.906 21 C -0.509 4.509 22 H 0.084 0.916 23 C -0.181 4.181 24 N -0.454 5.454 25 Si 0.788 3.212 26 H -0.170 1.170 27 H -0.192 1.192 28 H -0.188 1.188 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.149 0.851 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.107 0.893 39 H 0.148 0.852 40 H 0.242 0.758 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.125 0.875 46 H 0.117 0.883 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.148 -4.034 18.741 19.290 hybrid contribution 0.694 0.007 -0.360 0.781 sum -1.454 -4.028 18.381 18.873 Atomic orbital electron populations 1.22049 0.93482 1.02862 1.02729 1.21533 0.95311 0.97026 0.84826 0.91606 1.21857 0.78157 1.02623 0.97377 1.48391 1.06672 1.21991 1.57825 1.22328 0.88160 0.91918 0.99813 1.22658 0.98372 0.93978 1.02088 1.22376 0.92441 0.99251 1.05530 1.21441 0.91314 0.81592 0.75941 1.90649 1.75395 1.32664 1.46751 1.46213 1.67900 1.14477 1.09143 1.20914 0.76178 0.86910 0.85111 1.90631 1.50805 1.17626 1.85665 1.20227 1.02271 0.97423 0.91066 1.19495 0.97834 1.02160 0.99437 1.20699 0.96688 0.98524 0.95188 1.20695 0.99693 1.03545 1.02136 1.20956 0.94409 0.99351 0.98754 1.21295 0.98507 1.02023 0.99256 1.17730 0.92087 0.88868 0.91897 1.19519 0.92474 1.41045 0.97876 0.91587 1.26742 1.01959 0.91885 0.97498 1.69881 1.23521 1.35009 1.16948 0.85462 0.76446 0.80290 0.78979 1.16983 1.19235 1.18818 0.94648 0.91266 0.88679 0.85072 0.89233 0.90503 0.87352 0.92426 0.85784 0.89292 0.85240 0.75792 0.89762 0.88228 0.87044 0.86626 0.87457 0.88324 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.48 71.98 0.68 -2.65 16 2 C 0.12 3.03 2.88 44.99 0.13 3.16 16 3 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 4 C 0.12 2.19 5.54 86.38 0.48 2.66 16 5 N -0.62 -12.61 2.80 -817.99 -2.29 -14.90 16 6 C 0.10 1.49 7.35 86.83 0.64 2.13 16 7 C -0.13 -2.22 7.18 31.65 0.23 -1.99 16 8 C -0.16 -3.09 6.86 30.59 0.21 -2.88 16 9 C 0.51 13.03 7.30 87.90 0.64 13.67 16 10 O -0.57 -18.68 15.89 -3.03 -0.05 -18.73 16 11 N -0.72 -23.62 4.53 -442.52 -2.00 -25.62 16 12 C 0.52 21.95 7.40 87.66 0.65 22.60 16 13 O -0.57 -28.58 15.70 -3.03 -0.05 -28.63 16 14 C -0.07 -3.05 5.18 29.10 0.15 -2.90 16 15 C -0.19 -9.64 4.43 -19.41 -0.09 -9.73 16 16 C -0.09 -4.46 9.66 22.22 0.21 -4.24 16 17 C -0.24 -11.49 10.05 22.46 0.23 -11.26 16 18 C -0.12 -5.92 10.02 22.22 0.22 -5.69 16 19 C -0.19 -10.89 8.69 22.73 0.20 -10.69 16 20 C 0.10 5.50 5.56 -21.29 -0.12 5.38 16 21 C -0.48 -26.64 8.14 23.46 0.19 -26.45 16 22 H 0.07 3.61 6.67 -2.91 -0.02 3.59 16 23 C 0.03 1.73 5.16 85.26 0.44 2.17 16 24 N -0.83 -44.67 10.95 21.83 0.24 -44.43 16 25 Si 0.97 38.41 29.59 68.60 2.03 40.44 16 26 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 27 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 28 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.09 1.62 7.92 -2.39 -0.02 1.60 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.41 12.94 6.40 -92.71 -0.59 12.35 16 41 H 0.08 3.79 7.08 -2.39 -0.02 3.77 16 42 H 0.10 3.71 8.05 -2.39 -0.02 3.69 16 43 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 44 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 45 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 46 H 0.10 5.82 6.21 -2.91 -0.02 5.80 16 47 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 Total: -1.00 -75.71 385.45 3.36 -72.35 By element: Atomic # 1 Polarization: 45.85 SS G_CDS: 0.38 Total: 46.24 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 5.09 Total: -26.72 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -4.05 Total: -84.95 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -0.10 Total: -47.35 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -75.71 3.36 -72.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777362800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.348 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds