Wall clock time and date at job start Tue Mar 31 2020 16:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47058 * 2 1 4 4 C 1.46703 * 119.81722 * 89.99682 * 3 2 1 5 5 C 1.53035 * 109.06873 * 108.72694 * 4 3 2 6 6 C 1.52451 * 110.17163 * 88.68570 * 5 4 3 7 7 N 1.46070 * 111.51276 * 297.32801 * 6 5 4 8 8 C 1.34777 * 119.81249 * 242.93604 * 7 6 5 9 9 O 1.21283 * 120.00005 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00030 * 180.02562 * 8 7 6 11 11 C 1.50693 * 109.47136 * 180.02562 * 10 8 7 12 12 C 1.37646 * 120.12736 * 264.99994 * 11 10 8 13 13 C 1.38604 * 120.24929 * 179.97438 * 12 11 10 14 14 C 1.38663 * 120.50456 * 0.02562 * 13 12 11 15 15 C 1.37597 * 120.24328 * 359.97438 * 14 13 12 16 16 C 1.40698 * 120.13409 * 85.25153 * 11 10 8 17 17 C 1.41400 * 120.24037 * 0.02836 * 16 11 10 18 18 H 1.08002 * 119.99833 * 334.26140 * 17 16 11 19 19 C 1.39944 * 120.00085 * 154.26547 * 17 16 11 20 20 N 1.30818 * 119.99816 * 343.66666 * 19 17 16 21 21 Si 1.86800 * 119.99967 * 163.67214 * 19 17 16 22 22 H 1.48491 * 109.47398 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47083 * 119.99778 * 21 19 17 24 24 H 1.48498 * 109.46937 * 239.99532 * 21 19 17 25 25 C 1.46663 * 120.37378 * 63.21567 * 7 6 5 26 26 C 1.34253 * 119.81957 * 269.97796 * 3 2 1 27 27 O 1.21279 * 120.34283 * 357.11634 * 26 3 2 28 28 H 1.09008 * 109.46920 * 60.00358 * 1 2 3 29 29 H 1.09003 * 109.46556 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47347 * 300.00030 * 1 2 3 31 31 H 1.09004 * 109.47142 * 240.00490 * 2 1 3 32 32 H 1.08995 * 109.47136 * 119.99895 * 2 1 3 33 33 H 1.09000 * 109.53506 * 348.85359 * 4 3 2 34 34 H 1.08996 * 109.60707 * 228.64378 * 4 3 2 35 35 H 1.09000 * 109.35703 * 328.46857 * 5 4 3 36 36 H 1.09001 * 109.35384 * 208.89831 * 5 4 3 37 37 H 1.09000 * 109.07058 * 176.80938 * 6 5 4 38 38 H 1.08992 * 109.07252 * 57.85575 * 6 5 4 39 39 H 1.08997 * 109.46743 * 60.00303 * 10 8 7 40 40 H 1.09004 * 109.47043 * 300.00593 * 10 8 7 41 41 H 1.08005 * 119.87418 * 359.97438 * 12 11 10 42 42 H 1.08004 * 119.75364 * 180.02562 * 13 12 11 43 43 H 1.07997 * 119.87645 * 180.02562 * 14 13 12 44 44 H 1.08003 * 120.12247 * 179.97438 * 15 14 13 45 45 H 0.97001 * 119.99886 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.60341 * 37.50044 * 25 7 6 47 47 H 1.09007 * 109.59770 * 157.96711 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2614 2.0689 1.2728 5 6 3.7700 2.2266 1.4758 6 6 4.2525 3.5270 0.8431 7 7 4.0398 3.5309 -0.6020 8 6 5.0972 3.6018 -1.4347 9 8 6.2214 3.6618 -0.9835 10 6 4.8827 3.6066 -2.9263 11 6 6.2151 3.6913 -3.6252 12 6 6.7097 4.9124 -4.0239 13 6 7.9352 4.9933 -4.6664 14 6 8.6762 3.8481 -4.9155 15 6 8.2014 2.6169 -4.5258 16 6 6.9560 2.5221 -3.8775 17 6 6.4552 1.2616 -3.4778 18 1 5.7621 1.1930 -2.6524 19 6 6.8578 0.1031 -4.1516 20 7 7.4271 0.1939 -5.3259 21 14 6.5821 -1.5730 -3.3744 22 1 5.9252 -1.4041 -2.0534 23 1 5.7139 -2.3918 -4.2583 24 1 7.8884 -2.2556 -3.1935 25 6 2.6819 3.4641 -1.1519 26 6 2.2413 2.0105 -1.1648 27 8 2.0905 1.4249 -2.2161 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.8430 1.4816 2.0902 34 1 1.7916 3.0522 1.2528 35 1 4.2867 1.3861 1.0125 36 1 3.9915 2.2402 2.5430 37 1 5.3163 3.6489 1.0469 38 1 3.7085 4.3615 1.2854 39 1 4.2718 4.4660 -3.2027 40 1 4.3746 2.6891 -3.2233 41 1 6.1407 5.8109 -3.8354 42 1 8.3158 5.9556 -4.9754 43 1 9.6300 3.9229 -5.4165 44 1 8.7800 1.7261 -4.7212 45 1 7.7058 -0.6092 -5.7932 46 1 2.0053 4.0474 -0.5273 47 1 2.6787 3.8604 -2.1674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787342364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:11 Heat of formation + Delta-G solvation = -46.266767 kcal Electronic energy + Delta-G solvation = -29610.820536 eV Core-core repulsion = 25758.242487 eV Total energy + Delta-G solvation = -3852.578049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.65177 -39.01119 -37.38897 -36.49825 -35.29746 -33.53719 -32.65539 -31.51501 -30.81617 -29.37626 -27.46654 -27.25096 -25.62620 -24.77273 -23.28894 -22.22661 -20.85810 -20.01188 -19.31274 -18.56512 -17.46014 -17.04994 -16.97487 -16.10958 -15.88305 -15.31333 -15.06009 -14.55193 -14.42633 -14.09603 -13.82003 -13.74503 -13.52391 -13.49164 -13.06020 -12.91146 -12.60898 -12.54806 -12.42558 -12.25513 -11.82753 -11.66148 -11.50848 -11.47711 -11.13755 -11.10260 -11.08153 -10.95786 -10.89830 -10.59122 -10.31336 -10.03770 -9.40657 -9.28977 -9.18960 -9.08008 -8.81255 -8.46053 -7.24149 -7.20942 -6.65731 -4.24976 2.43050 2.85144 2.87221 3.04233 3.12613 3.18991 3.25067 3.33768 3.47543 4.02259 4.37195 4.64131 4.67179 4.74091 4.79668 4.96505 5.03725 5.12569 5.18857 5.22331 5.25930 5.41618 5.49776 5.50962 5.60469 5.82402 5.82581 5.92080 6.00280 6.05315 6.10296 6.17565 6.34091 6.41258 6.55234 6.57473 6.70072 6.87807 7.17974 7.29726 7.36924 7.49830 7.55882 7.74517 7.99967 8.15551 8.17926 8.20479 8.39931 8.70632 8.76075 9.00700 9.09559 10.28709 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.005038 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.746014 B = 5556.416846 C = 7050.910791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.612 5.612 4 C 0.113 3.887 5 C -0.161 4.161 6 C 0.107 3.893 7 N -0.620 5.620 8 C 0.521 3.479 9 O -0.511 6.511 10 C -0.073 4.073 11 C -0.182 4.182 12 C -0.081 4.081 13 C -0.241 4.241 14 C -0.107 4.107 15 C -0.160 4.160 16 C 0.129 3.871 17 C -0.450 4.450 18 H 0.072 0.928 19 C 0.078 3.922 20 N -0.795 5.795 21 Si 0.902 3.098 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.273 1.273 25 C 0.098 3.902 26 C 0.500 3.500 27 O -0.522 6.522 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.278 0.722 46 H 0.095 0.905 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 2.287 13.605 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 N -0.346 5.346 4 C -0.010 4.010 5 C -0.200 4.200 6 C -0.015 4.015 7 N -0.358 5.358 8 C 0.311 3.689 9 O -0.384 6.384 10 C -0.112 4.112 11 C -0.183 4.183 12 C -0.099 4.099 13 C -0.260 4.260 14 C -0.125 4.125 15 C -0.179 4.179 16 C 0.127 3.873 17 C -0.480 4.480 18 H 0.090 0.910 19 C -0.139 4.139 20 N -0.421 5.421 21 Si 0.726 3.274 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.198 1.198 25 C -0.029 4.029 26 C 0.286 3.714 27 O -0.396 6.396 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.803 1.851 13.073 18.391 hybrid contribution -0.199 -0.902 0.444 1.025 sum -13.002 0.949 13.517 18.779 Atomic orbital electron populations 1.22116 0.95878 1.02136 1.02113 1.21463 0.94208 0.82579 1.03422 1.48004 1.66132 1.14291 1.06216 1.21700 0.95941 0.97876 0.85503 1.22370 0.95971 0.99894 1.01770 1.21251 1.03851 0.96234 0.80206 1.47894 1.05446 1.76227 1.06225 1.21432 0.83650 0.74057 0.89738 1.90669 1.22702 1.47077 1.77922 1.20357 0.98523 1.03324 0.89012 1.19045 0.95917 0.93963 1.09416 1.20285 0.95655 0.95130 0.98831 1.20283 0.98213 0.96424 1.11109 1.20665 0.97986 0.93595 1.00274 1.21281 0.96689 0.95901 1.04020 1.17336 0.89958 0.91551 0.88478 1.19475 1.23743 0.90553 1.14217 0.90993 1.25846 0.92980 1.01266 0.93794 1.69828 1.30643 1.31121 1.10467 0.86361 0.78755 0.81743 0.80493 1.18704 1.19930 1.19791 1.22009 0.84888 0.92935 1.03041 1.21453 0.76637 0.89975 0.83347 1.90768 1.50493 1.67654 1.30666 0.92200 0.91695 0.92773 0.89651 0.90779 0.89694 0.90701 0.90460 0.89587 0.88449 0.91684 0.90600 0.87901 0.89806 0.89710 0.89633 0.86581 0.91088 0.88675 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 10.24 37.16 0.38 -1.08 16 2 C 0.11 1.15 6.08 -4.04 -0.02 1.13 16 3 N -0.61 -7.13 2.48 -173.14 -0.43 -7.56 16 4 C 0.11 0.91 5.83 -3.91 -0.02 0.89 16 5 C -0.16 -1.58 5.92 -26.99 -0.16 -1.74 16 6 C 0.11 1.27 5.91 -4.55 -0.03 1.24 16 7 N -0.62 -9.24 2.67 -174.90 -0.47 -9.70 16 8 C 0.52 10.46 7.32 -10.98 -0.08 10.38 16 9 O -0.51 -12.24 15.33 5.55 0.09 -12.16 16 10 C -0.07 -1.53 3.61 -29.04 -0.10 -1.63 16 11 C -0.18 -4.56 4.43 -103.91 -0.46 -5.02 16 12 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 13 C -0.24 -5.77 10.05 -39.29 -0.39 -6.16 16 14 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 15 C -0.16 -4.41 8.68 -38.88 -0.34 -4.75 16 16 C 0.13 3.60 5.56 -106.83 -0.59 3.01 16 17 C -0.45 -12.56 8.15 -37.74 -0.31 -12.87 16 18 H 0.07 2.02 6.68 -52.49 -0.35 1.67 16 19 C 0.08 2.09 5.16 -17.34 -0.09 2.00 16 20 N -0.79 -21.49 10.97 55.55 0.61 -20.88 16 21 Si 0.90 20.25 29.59 -169.99 -5.03 15.22 16 22 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 C 0.10 1.22 5.42 -4.51 -0.02 1.19 16 26 C 0.50 7.37 7.27 -10.63 -0.08 7.29 16 27 O -0.52 -9.94 16.68 5.56 0.09 -9.85 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 1.18 7.38 -51.93 -0.38 0.80 16 32 H 0.07 0.65 8.02 -51.93 -0.42 0.24 16 33 H 0.08 0.50 7.90 -51.93 -0.41 0.09 16 34 H 0.07 0.48 6.72 -51.93 -0.35 0.13 16 35 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.39 6.85 -51.93 -0.36 1.04 16 38 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.08 1.33 7.34 -51.93 -0.38 0.95 16 40 H 0.10 2.32 7.00 -51.93 -0.36 1.96 16 41 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.08 1.79 8.06 -52.48 -0.42 1.37 16 43 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 44 H 0.12 3.29 6.22 -52.48 -0.33 2.96 16 45 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 46 H 0.10 0.79 7.18 -51.93 -0.37 0.42 16 47 H 0.12 1.48 6.15 -51.92 -0.32 1.16 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -34.64 376.93 -9.52 -44.16 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.96 Total: 6.59 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.11 Total: -11.50 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.29 Total: -38.14 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.18 Total: -22.01 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.64 -9.52 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787342364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.104 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds