Wall clock time and date at job start Tue Mar 31 2020 16:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47058 * 2 1 4 4 C 1.46703 * 119.81722 * 89.99682 * 3 2 1 5 5 C 1.53035 * 109.06873 * 108.72694 * 4 3 2 6 6 C 1.52451 * 110.17163 * 88.68570 * 5 4 3 7 7 N 1.46070 * 111.51276 * 297.32801 * 6 5 4 8 8 C 1.34777 * 119.81249 * 242.93604 * 7 6 5 9 9 O 1.21283 * 120.00005 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00030 * 180.02562 * 8 7 6 11 11 C 1.50693 * 109.47136 * 180.02562 * 10 8 7 12 12 C 1.37646 * 120.12736 * 264.99994 * 11 10 8 13 13 C 1.38604 * 120.24929 * 179.97438 * 12 11 10 14 14 C 1.38663 * 120.50456 * 0.02562 * 13 12 11 15 15 C 1.37597 * 120.24328 * 359.97438 * 14 13 12 16 16 C 1.40698 * 120.13409 * 85.25153 * 11 10 8 17 17 C 1.41400 * 120.24037 * 0.02836 * 16 11 10 18 18 H 1.08002 * 119.99833 * 334.26140 * 17 16 11 19 19 C 1.39944 * 120.00085 * 154.26547 * 17 16 11 20 20 N 1.30818 * 119.99816 * 343.66666 * 19 17 16 21 21 Si 1.86800 * 119.99967 * 163.67214 * 19 17 16 22 22 H 1.48491 * 109.47398 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47083 * 119.99778 * 21 19 17 24 24 H 1.48498 * 109.46937 * 239.99532 * 21 19 17 25 25 C 1.46663 * 120.37378 * 63.21567 * 7 6 5 26 26 C 1.34253 * 119.81957 * 269.97796 * 3 2 1 27 27 O 1.21279 * 120.34283 * 357.11634 * 26 3 2 28 28 H 1.09008 * 109.46920 * 60.00358 * 1 2 3 29 29 H 1.09003 * 109.46556 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47347 * 300.00030 * 1 2 3 31 31 H 1.09004 * 109.47142 * 240.00490 * 2 1 3 32 32 H 1.08995 * 109.47136 * 119.99895 * 2 1 3 33 33 H 1.09000 * 109.53506 * 348.85359 * 4 3 2 34 34 H 1.08996 * 109.60707 * 228.64378 * 4 3 2 35 35 H 1.09000 * 109.35703 * 328.46857 * 5 4 3 36 36 H 1.09001 * 109.35384 * 208.89831 * 5 4 3 37 37 H 1.09000 * 109.07058 * 176.80938 * 6 5 4 38 38 H 1.08992 * 109.07252 * 57.85575 * 6 5 4 39 39 H 1.08997 * 109.46743 * 60.00303 * 10 8 7 40 40 H 1.09004 * 109.47043 * 300.00593 * 10 8 7 41 41 H 1.08005 * 119.87418 * 359.97438 * 12 11 10 42 42 H 1.08004 * 119.75364 * 180.02562 * 13 12 11 43 43 H 1.07997 * 119.87645 * 180.02562 * 14 13 12 44 44 H 1.08003 * 120.12247 * 179.97438 * 15 14 13 45 45 H 0.97001 * 119.99886 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.60341 * 37.50044 * 25 7 6 47 47 H 1.09007 * 109.59770 * 157.96711 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2614 2.0689 1.2728 5 6 3.7700 2.2266 1.4758 6 6 4.2525 3.5270 0.8431 7 7 4.0398 3.5309 -0.6020 8 6 5.0972 3.6018 -1.4347 9 8 6.2214 3.6618 -0.9835 10 6 4.8827 3.6066 -2.9263 11 6 6.2151 3.6913 -3.6252 12 6 6.7097 4.9124 -4.0239 13 6 7.9352 4.9933 -4.6664 14 6 8.6762 3.8481 -4.9155 15 6 8.2014 2.6169 -4.5258 16 6 6.9560 2.5221 -3.8775 17 6 6.4552 1.2616 -3.4778 18 1 5.7621 1.1930 -2.6524 19 6 6.8578 0.1031 -4.1516 20 7 7.4271 0.1939 -5.3259 21 14 6.5821 -1.5730 -3.3744 22 1 5.9252 -1.4041 -2.0534 23 1 5.7139 -2.3918 -4.2583 24 1 7.8884 -2.2556 -3.1935 25 6 2.6819 3.4641 -1.1519 26 6 2.2413 2.0105 -1.1648 27 8 2.0905 1.4249 -2.2161 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.8430 1.4816 2.0902 34 1 1.7916 3.0522 1.2528 35 1 4.2867 1.3861 1.0125 36 1 3.9915 2.2402 2.5430 37 1 5.3163 3.6489 1.0469 38 1 3.7085 4.3615 1.2854 39 1 4.2718 4.4660 -3.2027 40 1 4.3746 2.6891 -3.2233 41 1 6.1407 5.8109 -3.8354 42 1 8.3158 5.9556 -4.9754 43 1 9.6300 3.9229 -5.4165 44 1 8.7800 1.7261 -4.7212 45 1 7.7058 -0.6092 -5.7932 46 1 2.0053 4.0474 -0.5273 47 1 2.6787 3.8604 -2.1674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787342364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:10 Heat of formation + Delta-G solvation = -67.765099 kcal Electronic energy + Delta-G solvation = -29611.752773 eV Core-core repulsion = 25758.242487 eV Total energy + Delta-G solvation = -3853.510287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81319 -40.44759 -39.19669 -37.65726 -36.50398 -35.54807 -33.91382 -32.97107 -31.82784 -31.37365 -28.89397 -28.44667 -27.18082 -26.33955 -24.15471 -23.36251 -22.84633 -21.64728 -20.55282 -19.76267 -19.10471 -18.57099 -18.13779 -17.42588 -17.28913 -16.91146 -16.34636 -16.22025 -15.84454 -15.44662 -15.28985 -14.90829 -14.76412 -14.69606 -14.45740 -14.30944 -14.11263 -13.61254 -13.49970 -13.45047 -13.35597 -13.20564 -12.94856 -12.84012 -12.73426 -12.63723 -12.54244 -12.32149 -12.19516 -12.01939 -11.91820 -11.35210 -11.23616 -11.15211 -11.08900 -10.80178 -9.81321 -9.63690 -9.25103 -9.18396 -8.65621 -6.33719 0.93642 1.08723 1.23566 1.31192 1.36966 1.44157 1.66944 2.03423 2.12729 2.25795 2.72241 3.44837 3.58928 3.84031 3.88632 3.94920 4.05060 4.13244 4.24904 4.29501 4.35840 4.38767 4.41250 4.48974 4.56049 4.58542 4.69241 4.72786 4.76123 4.78483 4.90080 4.95948 5.01581 5.03971 5.15341 5.24587 5.28503 5.34160 5.50947 5.51653 5.63591 5.73379 5.99671 6.11937 6.18397 6.23075 6.35121 6.39396 6.70601 6.95303 7.07325 7.11895 7.23645 8.31198 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.005038 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.746014 B = 5556.416846 C = 7050.910791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.099 3.901 3 N -0.607 5.607 4 C 0.109 3.891 5 C -0.154 4.154 6 C 0.100 3.900 7 N -0.609 5.609 8 C 0.521 3.479 9 O -0.562 6.562 10 C -0.070 4.070 11 C -0.189 4.189 12 C -0.090 4.090 13 C -0.237 4.237 14 C -0.116 4.116 15 C -0.192 4.192 16 C 0.095 3.905 17 C -0.478 4.478 18 H 0.054 0.946 19 C 0.038 3.962 20 N -0.824 5.824 21 Si 0.965 3.035 22 H -0.274 1.274 23 H -0.262 1.262 24 H -0.257 1.257 25 C 0.098 3.902 26 C 0.488 3.512 27 O -0.581 6.581 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.032 0.968 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.286 0.714 46 H 0.152 0.848 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 3.890 16.305 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 N -0.340 5.340 4 C -0.012 4.012 5 C -0.193 4.193 6 C -0.022 4.022 7 N -0.344 5.344 8 C 0.311 3.689 9 O -0.439 6.439 10 C -0.109 4.109 11 C -0.190 4.190 12 C -0.108 4.108 13 C -0.256 4.256 14 C -0.134 4.134 15 C -0.211 4.211 16 C 0.093 3.907 17 C -0.508 4.508 18 H 0.072 0.928 19 C -0.176 4.176 20 N -0.450 5.450 21 Si 0.787 3.213 22 H -0.198 1.198 23 H -0.187 1.187 24 H -0.182 1.182 25 C -0.028 4.028 26 C 0.275 3.725 27 O -0.460 6.460 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.051 0.949 36 H 0.140 0.860 37 H 0.086 0.914 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.097 0.903 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.127 0.873 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.170 0.830 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.062 3.463 15.829 22.122 hybrid contribution 0.454 -1.287 -0.340 1.407 sum -14.607 2.175 15.489 21.401 Atomic orbital electron populations 1.22015 0.93865 1.02986 1.02204 1.21569 0.95828 0.82307 1.02599 1.48198 1.64494 1.14476 1.06816 1.22066 0.94716 0.99961 0.84457 1.22343 0.96913 0.96822 1.03194 1.21598 1.03109 0.99258 0.78202 1.47794 1.05258 1.74079 1.07278 1.21109 0.84092 0.73969 0.89707 1.90643 1.24770 1.49900 1.78565 1.20287 0.96788 1.03681 0.90147 1.19531 0.97159 0.93782 1.08566 1.20735 0.96072 0.95901 0.98046 1.20747 0.97901 0.97387 1.09590 1.20967 0.99147 0.93195 1.00078 1.21279 0.97176 0.96453 1.06225 1.17704 0.90698 0.92749 0.89575 1.19474 1.24825 0.91881 1.14610 0.92765 1.26557 0.92670 1.04364 0.94049 1.69866 1.31486 1.32412 1.11282 0.85429 0.79252 0.77623 0.79041 1.19818 1.18655 1.18163 1.22248 0.84112 0.92245 1.04216 1.21932 0.76243 0.90889 0.83448 1.90742 1.53286 1.68987 1.32951 0.94436 0.90582 0.90125 0.93851 0.88250 0.86221 0.87405 0.94873 0.86046 0.91426 0.86802 0.86971 0.90305 0.86165 0.86191 0.87347 0.88537 0.90303 0.83042 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.24 71.98 0.74 -1.68 16 2 C 0.10 2.08 6.08 86.38 0.53 2.61 16 3 N -0.61 -13.07 2.48 -820.39 -2.03 -15.10 16 4 C 0.11 1.26 5.83 86.35 0.50 1.76 16 5 C -0.15 -2.58 5.92 30.42 0.18 -2.40 16 6 C 0.10 2.11 5.91 86.28 0.51 2.62 16 7 N -0.61 -17.35 2.67 -825.64 -2.20 -19.56 16 8 C 0.52 21.25 7.32 87.66 0.64 21.89 16 9 O -0.56 -27.85 15.33 -3.04 -0.05 -27.90 16 10 C -0.07 -2.99 3.61 29.10 0.11 -2.88 16 11 C -0.19 -9.70 4.43 -19.41 -0.09 -9.79 16 12 C -0.09 -4.17 9.66 22.22 0.21 -3.96 16 13 C -0.24 -11.04 10.05 22.46 0.23 -10.81 16 14 C -0.12 -5.87 10.02 22.22 0.22 -5.64 16 15 C -0.19 -11.11 8.68 22.73 0.20 -10.91 16 16 C 0.09 5.57 5.56 -21.29 -0.12 5.45 16 17 C -0.48 -28.45 8.15 23.46 0.19 -28.26 16 18 H 0.05 3.30 6.68 -2.91 -0.02 3.28 16 19 C 0.04 2.12 5.16 85.26 0.44 2.56 16 20 N -0.82 -46.77 10.97 21.83 0.24 -46.53 16 21 Si 0.96 43.70 29.59 68.60 2.03 45.72 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 25 C 0.10 2.21 5.42 85.99 0.47 2.67 16 26 C 0.49 14.22 7.27 88.12 0.64 14.86 16 27 O -0.58 -23.34 16.68 -3.03 -0.05 -23.39 16 28 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 1.27 7.38 -2.38 -0.02 1.26 16 32 H 0.10 1.55 8.02 -2.39 -0.02 1.53 16 33 H 0.12 0.67 7.90 -2.39 -0.02 0.65 16 34 H 0.11 0.64 6.72 -2.39 -0.02 0.62 16 35 H 0.03 0.86 8.04 -2.39 -0.02 0.85 16 36 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.89 6.85 -2.39 -0.02 1.88 16 38 H 0.11 1.37 8.08 -2.39 -0.02 1.35 16 39 H 0.11 3.83 7.34 -2.39 -0.02 3.82 16 40 H 0.08 3.79 7.00 -2.38 -0.02 3.77 16 41 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 42 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 43 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 44 H 0.10 5.83 6.22 -2.91 -0.02 5.81 16 45 H 0.29 14.68 8.30 -92.71 -0.77 13.91 16 46 H 0.15 1.72 7.18 -2.39 -0.02 1.70 16 47 H 0.11 2.69 6.15 -2.38 -0.01 2.68 16 Total: -1.00 -84.88 376.93 4.51 -80.37 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.97 Total: 28.29 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 5.60 Total: -21.90 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -3.99 Total: -81.19 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.10 Total: -51.29 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -84.88 4.51 -80.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787342364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.603 kcal (2) G-P(sol) polarization free energy of solvation -84.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds