Wall clock time and date at job start Tue Mar 31 2020 17:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47580 * 2 1 4 4 C 1.46896 * 110.99821 * 301.33417 * 3 2 1 5 5 C 1.50702 * 109.47367 * 291.74567 * 4 3 2 6 6 H 1.08001 * 120.00026 * 2.69883 * 5 4 3 7 7 C 1.37875 * 120.00303 * 182.70415 * 5 4 3 8 8 N 1.31519 * 119.99949 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00289 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47154 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46930 * 119.99770 * 9 7 5 12 12 H 1.48500 * 109.47168 * 239.99838 * 9 7 5 13 13 C 1.46895 * 110.99992 * 65.28947 * 3 2 1 14 14 N 1.46498 * 109.47257 * 84.96052 * 13 3 2 15 15 C 1.33880 * 122.76571 * 90.01966 * 14 13 3 16 16 O 1.21225 * 125.39167 * 359.97438 * 15 14 13 17 17 C 1.51307 * 109.20899 * 179.97438 * 15 14 13 18 18 C 1.54233 * 103.69631 * 359.92853 * 17 15 14 19 19 H 1.08998 * 110.60918 * 118.59294 * 18 17 15 20 20 C 1.53003 * 110.60413 * 241.56239 * 18 17 15 21 21 C 1.50698 * 109.47038 * 184.99890 * 20 18 17 22 22 C 1.38230 * 119.99740 * 269.72200 * 21 20 18 23 23 C 1.38241 * 119.99975 * 179.78874 * 22 21 20 24 24 C 1.38237 * 119.99608 * 0.46395 * 23 22 21 25 25 C 1.38227 * 120.00152 * 359.76825 * 24 23 22 26 26 C 1.38231 * 120.00136 * 89.99886 * 21 20 18 27 27 C 1.33879 * 122.76049 * 270.02517 * 14 13 3 28 28 O 1.21219 * 125.39862 * 0.02562 * 27 14 13 29 29 H 1.09004 * 109.47059 * 297.91334 * 1 2 3 30 30 H 1.09000 * 109.46908 * 57.90396 * 1 2 3 31 31 H 1.08992 * 109.47582 * 177.91212 * 1 2 3 32 32 H 1.09004 * 109.46803 * 239.99360 * 2 1 3 33 33 H 1.09007 * 109.46853 * 120.00118 * 2 1 3 34 34 H 1.09003 * 109.47463 * 51.74143 * 4 3 2 35 35 H 1.08999 * 109.47478 * 171.74656 * 4 3 2 36 36 H 0.97002 * 120.00260 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47036 * 324.95712 * 13 3 2 38 38 H 1.09001 * 109.47197 * 204.95845 * 13 3 2 39 39 H 1.09006 * 110.60450 * 118.51844 * 17 15 14 40 40 H 1.08996 * 110.60692 * 241.33013 * 17 15 14 41 41 H 1.09007 * 109.47029 * 304.99615 * 20 18 17 42 42 H 1.08997 * 109.47463 * 64.99377 * 20 18 17 43 43 H 1.07999 * 120.00320 * 359.97438 * 22 21 20 44 44 H 1.08002 * 120.00097 * 180.25244 * 23 22 21 45 45 H 1.07998 * 119.99160 * 179.79536 * 24 23 22 46 46 H 1.08005 * 120.00146 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.00081 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5229 2.1190 -1.1714 5 6 2.1593 1.5636 -2.4194 6 1 2.8291 0.7188 -2.3540 7 6 1.8868 2.1339 -3.6447 8 7 1.0710 3.1624 -3.7245 9 14 2.6763 1.4460 -5.1916 10 1 3.5472 0.2976 -4.8341 11 1 1.6169 0.9918 -6.1279 12 1 3.4927 2.5020 -5.8423 13 6 1.6548 2.0724 1.2458 14 7 2.6569 1.7835 2.2746 15 6 3.7445 2.5419 2.4600 16 8 4.0278 3.5314 1.8196 17 6 4.5638 1.9682 3.5953 18 6 3.7543 0.7340 4.0426 19 1 4.3398 -0.1763 3.9134 20 6 3.3032 0.8840 5.4969 21 6 2.6227 -0.3836 5.9451 22 6 1.2575 -0.5290 5.7848 23 6 0.6338 -1.6936 6.1919 24 6 1.3741 -2.7089 6.7681 25 6 2.7386 -2.5616 6.9328 26 6 3.3629 -1.3988 6.5217 27 6 2.5605 0.7392 3.1068 28 8 1.6607 -0.0730 3.1131 29 1 -0.3633 0.4811 0.9081 30 1 -0.3633 0.5460 -0.8706 31 1 -0.3634 -1.0269 -0.0374 32 1 1.8933 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.4403 2.0098 -1.2363 35 1 1.7764 3.1745 -1.0732 36 1 0.8789 3.5635 -4.5866 37 1 0.6784 1.7226 1.5812 38 1 1.6147 3.1473 1.0694 39 1 5.5521 1.6719 3.2436 40 1 4.6476 2.6878 4.4097 41 1 4.1711 1.0735 6.1288 42 1 2.6065 1.7184 5.5770 43 1 0.6784 0.2661 5.3387 44 1 -0.4323 -1.8088 6.0629 45 1 0.8863 -3.6174 7.0892 46 1 3.3170 -3.3551 7.3826 47 1 4.4290 -1.2836 6.6507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788771976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:50 Heat of formation + Delta-G solvation = -29.134623 kcal Electronic energy + Delta-G solvation = -28834.743640 eV Core-core repulsion = 24982.908496 eV Total energy + Delta-G solvation = -3851.835144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81320 -39.37279 -38.27231 -37.20281 -35.75845 -34.38894 -32.56911 -31.50365 -30.97736 -29.38917 -27.77798 -26.95857 -25.12839 -24.27839 -23.15907 -22.70193 -21.95198 -21.25431 -20.03732 -18.89677 -17.20248 -16.94182 -16.65721 -16.25406 -16.02827 -15.38097 -15.32108 -14.92086 -14.82845 -14.54630 -14.11443 -14.00801 -13.98396 -13.65839 -13.49551 -13.37436 -12.98243 -12.70064 -12.50931 -12.44506 -12.21367 -11.89860 -11.59921 -11.46108 -11.16884 -11.15417 -11.08603 -11.00664 -10.73806 -10.60944 -10.30326 -10.15449 -9.93659 -9.77370 -9.46047 -9.21228 -8.97853 -8.79323 -8.43695 -7.37963 -6.03114 -4.03791 1.21585 1.33651 1.72596 2.71357 2.97290 3.31496 3.38851 3.43843 3.65773 3.97668 4.21647 4.28583 4.43109 4.64506 4.70666 4.75126 4.89855 4.96052 4.97783 5.07475 5.20114 5.32254 5.33378 5.39124 5.40304 5.46535 5.57044 5.67190 5.70217 5.82438 5.87541 5.90316 5.94766 5.99561 6.17853 6.34408 6.42918 6.47171 6.49733 6.64814 6.86611 6.90359 7.07596 7.24500 7.33978 7.55722 7.74413 8.00185 8.03165 8.15460 8.47363 9.02161 9.59797 11.07755 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.003073 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.622965 B = 9109.015257 C = 9923.970651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.060 3.940 3 N -0.544 5.544 4 C 0.194 3.806 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.257 3.743 14 N -0.560 5.560 15 C 0.528 3.472 16 O -0.473 6.473 17 C -0.155 4.155 18 C -0.121 4.121 19 H 0.121 0.879 20 C -0.062 4.062 21 C -0.090 4.090 22 C -0.081 4.081 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.127 4.127 26 C -0.114 4.114 27 C 0.527 3.473 28 O -0.471 6.471 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.004 0.996 35 H 0.033 0.967 36 H 0.261 0.739 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.712 -7.368 23.875 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.068 4.068 3 N -0.269 5.269 4 C 0.069 3.931 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.046 3.954 14 N -0.304 5.304 15 C 0.316 3.684 16 O -0.343 6.343 17 C -0.195 4.195 18 C -0.142 4.142 19 H 0.139 0.861 20 C -0.099 4.099 21 C -0.090 4.090 22 C -0.100 4.100 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.132 4.132 27 C 0.315 3.685 28 O -0.342 6.342 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.022 0.978 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.778 -7.127 23.313 24.669 hybrid contribution -0.510 -0.376 -1.088 1.259 sum 3.268 -7.503 22.225 23.683 Atomic orbital electron populations 1.22328 0.98895 1.01363 1.01661 1.22032 0.92649 0.90494 1.01592 1.61963 1.60255 1.02692 1.01965 1.19822 0.94141 0.93619 0.85494 1.21114 1.27125 1.15467 0.90439 0.91956 1.24962 0.95393 0.95055 0.99145 1.69960 1.35967 1.22815 1.25027 0.86438 0.79095 0.78967 0.82907 1.19716 1.21118 1.21003 1.22233 0.88022 1.00037 0.85091 1.46995 1.24448 1.26819 1.32132 1.20634 0.80872 0.82734 0.84174 1.90797 1.70467 1.23932 1.49103 1.22591 1.00722 0.97700 0.98508 1.22163 0.95693 1.00904 0.95459 0.86064 1.20488 1.01014 0.95748 0.92657 1.19690 0.93960 0.95871 0.99472 1.20999 0.94075 0.97902 0.96978 1.21122 0.99974 0.93837 0.98783 1.21130 0.94351 0.98812 0.99673 1.21067 0.94854 0.97654 1.00881 1.20980 0.99485 0.93560 0.99208 1.20703 0.87252 0.79721 0.80828 1.90750 1.36158 1.38151 1.69109 0.93718 0.91128 0.93223 0.90295 0.92469 0.97814 0.94891 0.92955 0.91193 0.88550 0.86276 0.86477 0.89111 0.90386 0.86375 0.86315 0.86454 0.86357 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 9.32 37.16 0.35 -3.11 16 2 C 0.06 1.22 5.83 -3.83 -0.02 1.20 16 3 N -0.54 -11.90 4.78 -239.99 -1.15 -13.05 16 4 C 0.19 5.02 4.45 -4.98 -0.02 5.00 16 5 C -0.50 -14.21 8.61 -34.44 -0.30 -14.50 16 6 H 0.06 1.77 7.15 -52.49 -0.38 1.39 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.26 4.77 5.30 -63.32 -0.34 4.44 16 14 N -0.56 -8.74 2.80 -118.48 -0.33 -9.07 16 15 C 0.53 7.85 8.08 -11.09 -0.09 7.76 16 16 O -0.47 -9.03 17.48 5.61 0.10 -8.93 16 17 C -0.16 -1.37 6.66 -26.94 -0.18 -1.55 16 18 C -0.12 -1.10 3.09 -90.64 -0.28 -1.38 16 19 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.06 -0.46 4.67 -27.88 -0.13 -0.59 16 21 C -0.09 -0.85 4.84 -104.63 -0.51 -1.36 16 22 C -0.08 -0.89 7.73 -39.58 -0.31 -1.19 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 25 C -0.13 -1.11 10.05 -39.59 -0.40 -1.50 16 26 C -0.11 -0.98 9.70 -39.58 -0.38 -1.37 16 27 C 0.53 7.20 6.70 -10.90 -0.07 7.12 16 28 O -0.47 -7.42 13.20 5.61 0.07 -7.35 16 29 H 0.04 0.79 6.27 -51.93 -0.33 0.47 16 30 H 0.07 1.48 6.10 -51.93 -0.32 1.17 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.72 6.99 -51.93 -0.36 1.36 16 33 H 0.06 1.10 5.84 -51.93 -0.30 0.80 16 34 H 0.00 0.11 5.82 -51.93 -0.30 -0.19 16 35 H 0.03 0.93 7.72 -51.93 -0.40 0.53 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.07 1.25 5.50 -51.93 -0.29 0.96 16 38 H 0.10 1.87 7.23 -51.93 -0.38 1.50 16 39 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.12 0.72 7.74 -51.93 -0.40 0.32 16 41 H 0.09 0.44 8.09 -51.93 -0.42 0.02 16 42 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 43 H 0.12 1.34 7.57 -52.49 -0.40 0.94 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 47 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -33.71 378.00 -10.24 -43.95 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.78 Total: 0.53 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -3.57 Total: -2.71 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.74 Total: -48.12 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.17 Total: -16.28 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.71 -10.24 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788771976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.817 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds