Wall clock time and date at job start Tue Mar 31 2020 17:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47580 * 2 1 4 4 C 1.46896 * 110.99821 * 301.33417 * 3 2 1 5 5 C 1.50702 * 109.47367 * 291.74567 * 4 3 2 6 6 H 1.08001 * 120.00026 * 2.69883 * 5 4 3 7 7 C 1.37875 * 120.00303 * 182.70415 * 5 4 3 8 8 N 1.31519 * 119.99949 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00289 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47154 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46930 * 119.99770 * 9 7 5 12 12 H 1.48500 * 109.47168 * 239.99838 * 9 7 5 13 13 C 1.46895 * 110.99992 * 65.28947 * 3 2 1 14 14 N 1.46498 * 109.47257 * 84.96052 * 13 3 2 15 15 C 1.33880 * 122.76571 * 90.01966 * 14 13 3 16 16 O 1.21225 * 125.39167 * 359.97438 * 15 14 13 17 17 C 1.51307 * 109.20899 * 179.97438 * 15 14 13 18 18 C 1.54233 * 103.69631 * 359.92853 * 17 15 14 19 19 H 1.08998 * 110.60918 * 118.59294 * 18 17 15 20 20 C 1.53003 * 110.60413 * 241.56239 * 18 17 15 21 21 C 1.50698 * 109.47038 * 184.99890 * 20 18 17 22 22 C 1.38230 * 119.99740 * 269.72200 * 21 20 18 23 23 C 1.38241 * 119.99975 * 179.78874 * 22 21 20 24 24 C 1.38237 * 119.99608 * 0.46395 * 23 22 21 25 25 C 1.38227 * 120.00152 * 359.76825 * 24 23 22 26 26 C 1.38231 * 120.00136 * 89.99886 * 21 20 18 27 27 C 1.33879 * 122.76049 * 270.02517 * 14 13 3 28 28 O 1.21219 * 125.39862 * 0.02562 * 27 14 13 29 29 H 1.09004 * 109.47059 * 297.91334 * 1 2 3 30 30 H 1.09000 * 109.46908 * 57.90396 * 1 2 3 31 31 H 1.08992 * 109.47582 * 177.91212 * 1 2 3 32 32 H 1.09004 * 109.46803 * 239.99360 * 2 1 3 33 33 H 1.09007 * 109.46853 * 120.00118 * 2 1 3 34 34 H 1.09003 * 109.47463 * 51.74143 * 4 3 2 35 35 H 1.08999 * 109.47478 * 171.74656 * 4 3 2 36 36 H 0.97002 * 120.00260 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47036 * 324.95712 * 13 3 2 38 38 H 1.09001 * 109.47197 * 204.95845 * 13 3 2 39 39 H 1.09006 * 110.60450 * 118.51844 * 17 15 14 40 40 H 1.08996 * 110.60692 * 241.33013 * 17 15 14 41 41 H 1.09007 * 109.47029 * 304.99615 * 20 18 17 42 42 H 1.08997 * 109.47463 * 64.99377 * 20 18 17 43 43 H 1.07999 * 120.00320 * 359.97438 * 22 21 20 44 44 H 1.08002 * 120.00097 * 180.25244 * 23 22 21 45 45 H 1.07998 * 119.99160 * 179.79536 * 24 23 22 46 46 H 1.08005 * 120.00146 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.00081 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5229 2.1190 -1.1714 5 6 2.1593 1.5636 -2.4194 6 1 2.8291 0.7188 -2.3540 7 6 1.8868 2.1339 -3.6447 8 7 1.0710 3.1624 -3.7245 9 14 2.6763 1.4460 -5.1916 10 1 3.5472 0.2976 -4.8341 11 1 1.6169 0.9918 -6.1279 12 1 3.4927 2.5020 -5.8423 13 6 1.6548 2.0724 1.2458 14 7 2.6569 1.7835 2.2746 15 6 3.7445 2.5419 2.4600 16 8 4.0278 3.5314 1.8196 17 6 4.5638 1.9682 3.5953 18 6 3.7543 0.7340 4.0426 19 1 4.3398 -0.1763 3.9134 20 6 3.3032 0.8840 5.4969 21 6 2.6227 -0.3836 5.9451 22 6 1.2575 -0.5290 5.7848 23 6 0.6338 -1.6936 6.1919 24 6 1.3741 -2.7089 6.7681 25 6 2.7386 -2.5616 6.9328 26 6 3.3629 -1.3988 6.5217 27 6 2.5605 0.7392 3.1068 28 8 1.6607 -0.0730 3.1131 29 1 -0.3633 0.4811 0.9081 30 1 -0.3633 0.5460 -0.8706 31 1 -0.3634 -1.0269 -0.0374 32 1 1.8933 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.4403 2.0098 -1.2363 35 1 1.7764 3.1745 -1.0732 36 1 0.8789 3.5635 -4.5866 37 1 0.6784 1.7226 1.5812 38 1 1.6147 3.1473 1.0694 39 1 5.5521 1.6719 3.2436 40 1 4.6476 2.6878 4.4097 41 1 4.1711 1.0735 6.1288 42 1 2.6065 1.7184 5.5770 43 1 0.6784 0.2661 5.3387 44 1 -0.4323 -1.8088 6.0629 45 1 0.8863 -3.6174 7.0892 46 1 3.3170 -3.3551 7.3826 47 1 4.4290 -1.2836 6.6507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788771976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:49 Heat of formation + Delta-G solvation = -50.187725 kcal Electronic energy + Delta-G solvation = -28835.656571 eV Core-core repulsion = 24982.908496 eV Total energy + Delta-G solvation = -3852.748075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.92515 -40.12281 -39.45684 -38.84825 -36.88218 -35.47349 -34.62795 -32.40602 -31.64162 -31.08558 -29.28957 -28.10955 -26.51540 -25.41812 -25.11422 -23.38363 -22.88872 -22.18672 -21.49199 -20.16061 -18.56090 -18.20759 -17.82646 -17.57952 -17.38359 -16.81769 -16.45930 -16.15358 -16.05077 -15.80172 -15.57365 -15.11862 -14.98338 -14.84573 -14.53748 -14.31051 -14.18702 -14.09966 -13.72549 -13.36915 -13.22214 -13.18882 -13.11311 -12.91540 -12.81152 -12.62617 -12.56218 -12.14290 -12.00834 -11.87623 -11.75025 -11.73091 -11.50626 -11.27034 -10.88817 -10.83222 -10.61809 -9.66676 -9.48740 -9.18970 -8.23265 -6.32706 0.51772 0.62086 0.67003 1.37639 1.38770 1.50727 1.54838 1.86750 2.37921 2.96260 3.08389 3.13436 3.21121 3.36007 3.49306 3.88037 3.98875 4.07692 4.10728 4.14516 4.18561 4.27067 4.35805 4.38099 4.40787 4.44701 4.59510 4.60780 4.74288 4.78575 4.81315 4.83178 4.89813 4.97259 5.06965 5.08968 5.22918 5.27539 5.29091 5.37723 5.59982 5.68571 5.74691 5.81968 5.91447 5.97452 6.23707 6.25298 6.42920 6.46721 6.79708 6.87628 7.35895 8.87885 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.003073 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.622965 B = 9109.015257 C = 9923.970651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.068 3.932 3 N -0.553 5.553 4 C 0.212 3.788 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.262 3.738 14 N -0.569 5.569 15 C 0.517 3.483 16 O -0.527 6.527 17 C -0.133 4.133 18 C -0.103 4.103 19 H 0.142 0.858 20 C -0.058 4.058 21 C -0.098 4.098 22 C -0.104 4.104 23 C -0.141 4.141 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.114 4.114 27 C 0.519 3.481 28 O -0.495 6.495 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.071 0.929 34 H -0.011 1.011 35 H -0.002 1.002 36 H 0.265 0.735 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.133 0.867 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.118 0.882 45 H 0.131 0.869 46 H 0.141 0.859 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.320 -9.087 25.819 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.060 4.060 3 N -0.278 5.278 4 C 0.086 3.914 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.205 1.205 13 C 0.050 3.950 14 N -0.312 5.312 15 C 0.309 3.691 16 O -0.401 6.401 17 C -0.172 4.172 18 C -0.124 4.124 19 H 0.160 0.840 20 C -0.095 4.095 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.132 4.132 27 C 0.309 3.691 28 O -0.367 6.367 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.007 0.993 35 H 0.016 0.984 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.151 0.849 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.136 0.864 45 H 0.149 0.851 46 H 0.159 0.841 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.392 -8.877 25.312 27.574 hybrid contribution -1.392 0.133 -1.606 2.129 sum 5.000 -8.744 23.706 25.757 Atomic orbital electron populations 1.22190 0.97843 1.02341 1.00709 1.21961 0.93465 0.89349 1.01250 1.61858 1.60685 1.03285 1.01981 1.19404 0.93059 0.92020 0.86914 1.21380 1.27240 1.15499 0.91646 0.92373 1.25869 0.95805 0.95254 1.02565 1.70081 1.37128 1.23994 1.26069 0.85342 0.78320 0.78415 0.78591 1.18921 1.20142 1.20474 1.21961 0.89633 0.98671 0.84713 1.47145 1.24360 1.28092 1.31595 1.21806 0.80715 0.81678 0.84927 1.90772 1.71570 1.26267 1.51493 1.22706 1.00196 0.97660 0.96625 1.22220 0.93127 1.01958 0.95047 0.83991 1.20593 1.02470 0.94692 0.91715 1.19928 0.93347 0.97077 0.99428 1.21056 0.95273 0.97820 0.98113 1.21287 1.00370 0.94485 0.99800 1.21387 0.95102 0.99035 0.99556 1.21447 0.94694 0.98543 1.00426 1.21361 1.00972 0.92840 0.98014 1.21642 0.88310 0.78421 0.80750 1.90741 1.37508 1.38798 1.69653 0.92945 0.93819 0.91065 0.92053 0.91090 0.99332 0.98358 0.92635 0.90722 0.90482 0.83564 0.82707 0.84934 0.90582 0.88029 0.86441 0.85069 0.84108 0.83063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.61 9.32 71.98 0.67 -5.94 16 2 C 0.07 2.78 5.83 86.30 0.50 3.29 16 3 N -0.55 -25.19 4.78 -913.18 -4.37 -29.56 16 4 C 0.21 11.61 4.45 85.56 0.38 11.99 16 5 C -0.52 -30.28 8.61 25.60 0.22 -30.06 16 6 H 0.06 3.37 7.15 -2.91 -0.02 3.35 16 7 C 0.00 0.19 5.46 84.65 0.46 0.65 16 8 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 9 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.26 10.21 5.30 170.81 0.90 11.11 16 14 N -0.57 -17.70 2.80 -766.58 -2.14 -19.84 16 15 C 0.52 14.95 8.08 87.99 0.71 15.66 16 16 O -0.53 -20.56 17.48 -2.86 -0.05 -20.61 16 17 C -0.13 -1.79 6.66 30.46 0.20 -1.58 16 18 C -0.10 -1.47 3.09 -10.81 -0.03 -1.51 16 19 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 20 C -0.06 -0.62 4.67 29.85 0.14 -0.48 16 21 C -0.10 -1.58 4.84 -19.87 -0.10 -1.68 16 22 C -0.10 -2.22 7.73 22.27 0.17 -2.05 16 23 C -0.14 -2.92 10.05 22.27 0.22 -2.69 16 24 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 25 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 26 C -0.11 -1.52 9.70 22.27 0.22 -1.30 16 27 C 0.52 13.47 6.70 88.11 0.59 14.06 16 28 O -0.49 -15.33 13.20 -2.84 -0.04 -15.36 16 29 H 0.05 1.90 6.27 -2.39 -0.01 1.89 16 30 H 0.04 1.91 6.10 -2.39 -0.01 1.89 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.06 2.73 6.99 -2.38 -0.02 2.71 16 33 H 0.07 2.73 5.84 -2.38 -0.01 2.72 16 34 H -0.01 -0.62 5.82 -2.39 -0.01 -0.63 16 35 H 0.00 -0.10 7.72 -2.39 -0.02 -0.12 16 36 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.08 2.79 5.50 -2.39 -0.01 2.78 16 38 H 0.08 3.25 7.23 -2.39 -0.02 3.24 16 39 H 0.15 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.16 1.03 7.74 -2.39 -0.02 1.02 16 41 H 0.13 0.42 8.09 -2.38 -0.02 0.40 16 42 H 0.08 0.89 8.06 -2.39 -0.02 0.87 16 43 H 0.10 2.39 7.57 -2.91 -0.02 2.37 16 44 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 46 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 47 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -78.12 378.00 2.40 -75.71 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.98 Total: 13.26 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.71 Total: 5.69 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -6.22 Total: -106.19 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.09 Total: -35.98 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -78.12 2.40 -75.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788771976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.526 kcal (2) G-P(sol) polarization free energy of solvation -78.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds