Wall clock time and date at job start Tue Mar 31 2020 15:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47085 * 2 1 4 4 C 1.50697 * 109.47330 * 240.00228 * 2 1 3 5 5 H 1.07999 * 120.00016 * 240.00196 * 4 2 1 6 6 C 1.37885 * 119.99746 * 59.99501 * 4 2 1 7 7 N 1.31506 * 120.00149 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99568 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46779 * 90.00921 * 8 6 4 10 10 H 1.48504 * 109.46744 * 209.99917 * 8 6 4 11 11 H 1.48492 * 109.47487 * 330.00318 * 8 6 4 12 12 N 1.46899 * 109.47130 * 119.99926 * 2 1 3 13 13 C 1.46900 * 111.00227 * 290.20287 * 12 2 1 14 14 C 1.46903 * 110.99900 * 54.16059 * 12 2 1 15 15 N 1.46498 * 109.47403 * 151.18439 * 14 12 2 16 16 C 1.33877 * 122.75878 * 90.01933 * 15 14 12 17 17 O 1.21226 * 125.40328 * 359.97438 * 16 15 14 18 18 C 1.51315 * 109.20297 * 180.02562 * 16 15 14 19 19 C 1.54228 * 103.55674 * 0.02562 * 18 16 15 20 20 H 1.09002 * 110.60280 * 241.33089 * 19 18 16 21 21 C 1.52997 * 110.60838 * 118.51834 * 19 18 16 22 22 C 1.50694 * 109.47313 * 174.99877 * 21 19 18 23 23 C 1.38239 * 120.00244 * 269.72929 * 22 21 19 24 24 C 1.38234 * 119.99731 * 179.81144 * 23 22 21 25 25 C 1.38231 * 120.00223 * 0.39595 * 24 23 22 26 26 C 1.38239 * 120.00148 * 359.85372 * 25 24 23 27 27 C 1.38231 * 119.99860 * 359.96131 * 26 25 24 28 28 C 1.33872 * 122.75940 * 269.73323 * 15 14 12 29 29 O 1.21218 * 125.39850 * 359.97438 * 28 15 14 30 30 H 1.08999 * 109.47583 * 53.79032 * 1 2 3 31 31 H 1.09001 * 109.47260 * 173.79291 * 1 2 3 32 32 H 1.08997 * 109.47344 * 293.79145 * 1 2 3 33 33 H 0.97000 * 120.00364 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.46655 * 183.95583 * 13 12 2 35 35 H 1.08993 * 109.47145 * 63.94939 * 13 12 2 36 36 H 1.09002 * 109.46821 * 303.95180 * 13 12 2 37 37 H 1.09007 * 109.46431 * 271.18763 * 14 12 2 38 38 H 1.08999 * 109.47080 * 31.17992 * 14 12 2 39 39 H 1.08994 * 110.60930 * 118.52176 * 18 16 15 40 40 H 1.09009 * 110.60373 * 241.48448 * 18 16 15 41 41 H 1.08998 * 109.47105 * 295.00330 * 21 19 18 42 42 H 1.08999 * 109.46835 * 54.99770 * 21 19 18 43 43 H 1.07997 * 119.99523 * 359.97438 * 23 22 21 44 44 H 1.08004 * 119.99877 * 180.22632 * 24 23 22 45 45 H 1.08004 * 120.00179 * 179.84186 * 25 24 23 46 46 H 1.07996 * 120.00008 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00004 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4872 -0.1400 -5.1121 11 1 3.6308 -1.7563 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 1.7486 0.0950 2.4095 14 6 1.4380 -2.0373 1.3052 15 7 2.3694 -2.9178 2.0146 16 6 2.3521 -3.0699 3.3446 17 8 1.5879 -2.5154 4.1050 18 6 3.4383 -4.0428 3.7485 19 6 4.0937 -4.4302 2.4073 20 1 3.9914 -5.5000 2.2251 21 6 5.5680 -4.0213 2.3904 22 6 6.2129 -4.5193 1.1227 23 6 6.8038 -5.7687 1.0925 24 6 7.3919 -6.2270 -0.0715 25 6 7.3965 -5.4327 -1.2028 26 6 6.8102 -4.1812 -1.1711 27 6 6.2187 -3.7244 -0.0083 28 6 3.3043 -3.6408 1.3857 29 8 3.4913 -3.6575 0.1882 30 1 -0.3634 0.6071 -0.8291 31 1 -0.3634 -1.0216 -0.1111 32 1 -0.3634 0.4146 0.9403 33 1 0.7093 1.1619 -3.4843 34 1 2.1830 -0.4066 3.2742 35 1 0.6716 0.1900 2.5476 36 1 2.1903 1.0860 2.3046 37 1 0.4980 -1.9844 1.8546 38 1 1.2533 -2.4328 0.3064 39 1 4.1627 -3.5588 4.4034 40 1 3.0075 -4.9194 4.2327 41 1 5.6442 -2.9349 2.4343 42 1 6.0755 -4.4563 3.2514 43 1 6.8035 -6.3877 1.9774 44 1 7.8503 -7.2046 -0.0963 45 1 7.8583 -5.7898 -2.1115 46 1 6.8142 -3.5605 -2.0549 47 1 5.7603 -2.7469 0.0164 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788773258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:14 Heat of formation + Delta-G solvation = -27.385075 kcal Electronic energy + Delta-G solvation = -29543.277389 eV Core-core repulsion = 25691.518112 eV Total energy + Delta-G solvation = -3851.759277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70313 -39.18227 -38.14050 -37.16643 -35.62645 -34.30000 -32.63042 -31.25283 -30.73103 -28.81914 -27.50557 -26.38578 -25.23215 -24.60147 -23.33622 -22.46476 -21.81567 -21.07732 -19.87350 -18.79884 -17.03883 -16.88050 -16.57502 -16.30657 -15.82519 -15.17431 -15.10876 -14.87022 -14.46656 -14.05575 -13.96395 -13.83714 -13.68135 -13.54347 -13.29515 -13.18143 -13.09060 -12.47376 -12.36335 -12.17214 -12.02849 -11.85852 -11.47877 -11.33193 -11.12034 -10.95091 -10.84346 -10.82707 -10.70249 -10.50849 -10.24659 -10.15145 -9.96106 -9.59766 -9.40222 -8.87466 -8.74401 -8.57053 -8.38252 -7.39503 -6.00152 -4.02842 1.43728 1.57436 1.81810 2.83516 3.09268 3.34621 3.40832 3.48966 3.88450 4.08742 4.33465 4.38598 4.45925 4.74403 4.89964 4.93560 5.04387 5.12226 5.15416 5.27812 5.32635 5.34568 5.46225 5.53119 5.58274 5.61767 5.79769 5.85428 5.90019 6.00011 6.13234 6.16511 6.20835 6.26465 6.46274 6.55701 6.68810 6.69469 6.76733 6.77850 7.02681 7.14771 7.15439 7.38144 7.58945 7.64456 7.88682 8.01221 8.13730 8.30859 8.51922 9.07976 9.63237 11.07440 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009362 B = 0.005522 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.078617 B = 5069.357832 C = 7620.575574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.216 3.784 3 H 0.044 0.956 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.544 5.544 13 C 0.026 3.974 14 C 0.271 3.729 15 N -0.561 5.561 16 C 0.525 3.475 17 O -0.493 6.493 18 C -0.155 4.155 19 C -0.122 4.122 20 H 0.118 0.882 21 C -0.061 4.061 22 C -0.092 4.092 23 C -0.117 4.117 24 C -0.130 4.130 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.077 4.077 28 C 0.526 3.474 29 O -0.446 6.446 30 H 0.088 0.912 31 H 0.029 0.971 32 H 0.010 0.990 33 H 0.259 0.741 34 H 0.053 0.947 35 H 0.022 0.978 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.698 -12.855 11.180 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.110 3.890 3 H 0.062 0.938 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.196 1.196 12 N -0.269 5.269 13 C -0.122 4.122 14 C 0.060 3.940 15 N -0.304 5.304 16 C 0.314 3.686 17 O -0.367 6.367 18 C -0.195 4.195 19 C -0.143 4.143 20 H 0.136 0.864 21 C -0.098 4.098 22 C -0.092 4.092 23 C -0.135 4.135 24 C -0.148 4.148 25 C -0.140 4.140 26 C -0.135 4.135 27 C -0.095 4.095 28 C 0.312 3.688 29 O -0.314 6.314 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.138 0.862 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.798 -12.454 10.683 19.111 hybrid contribution -0.736 -0.214 -0.895 1.179 sum 9.061 -12.669 9.788 18.396 Atomic orbital electron populations 1.22451 1.00462 1.00330 0.99784 1.19346 0.89848 0.94539 0.85224 0.93794 1.21253 1.30822 1.12848 0.89290 0.90814 1.24897 0.95118 0.95002 0.98999 1.69896 1.37178 1.23040 1.23417 0.86537 0.79629 0.79184 0.82384 1.20895 1.21495 1.19565 1.61929 1.59504 1.01504 1.04003 1.22378 0.98699 0.98181 0.92967 1.22183 0.87082 0.86758 0.97932 1.47028 1.33586 1.40570 1.09245 1.20715 0.84390 0.81513 0.82000 1.90735 1.41513 1.48944 1.55463 1.22581 0.97996 1.00622 0.98279 1.22110 0.96139 1.02540 0.93560 0.86361 1.20462 0.91205 1.02153 0.96001 1.19676 0.99294 0.94865 0.95333 1.20926 0.99060 0.95462 0.98059 1.21011 1.00880 0.99573 0.93377 1.21125 1.00025 0.94710 0.98160 1.21185 0.97876 0.96186 0.98242 1.21163 0.95931 1.00211 0.92156 1.20533 0.79805 0.79342 0.89113 1.90828 1.65091 1.61650 1.13817 0.89337 0.95201 0.97092 0.93071 0.92843 0.95939 0.92178 0.92353 0.86522 0.86447 0.86617 0.90081 0.89396 0.86434 0.86577 0.86583 0.86172 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.26 37.16 0.31 -3.76 16 2 C 0.22 5.37 2.29 -68.87 -0.16 5.21 16 3 H 0.04 1.20 8.02 -51.93 -0.42 0.78 16 4 C -0.50 -13.69 7.59 -34.44 -0.26 -13.95 16 5 H 0.07 2.08 6.91 -52.49 -0.36 1.71 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.90 -25.41 11.39 55.43 0.63 -24.78 16 8 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.54 -11.71 4.80 -240.20 -1.15 -12.86 16 13 C 0.03 0.51 9.06 60.06 0.54 1.05 16 14 C 0.27 5.37 3.87 -63.31 -0.25 5.12 16 15 N -0.56 -9.28 2.80 -118.62 -0.33 -9.61 16 16 C 0.53 7.55 7.51 -11.09 -0.08 7.47 16 17 O -0.49 -8.42 16.08 5.60 0.09 -8.33 16 18 C -0.15 -1.39 6.67 -26.94 -0.18 -1.57 16 19 C -0.12 -1.27 3.06 -90.83 -0.28 -1.55 16 20 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 21 C -0.06 -0.59 4.67 -27.89 -0.13 -0.73 16 22 C -0.09 -1.12 4.84 -104.62 -0.51 -1.62 16 23 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 24 C -0.13 -1.42 10.05 -39.59 -0.40 -1.82 16 25 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 26 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 27 C -0.08 -1.14 7.71 -39.58 -0.31 -1.44 16 28 C 0.53 8.33 7.26 -11.08 -0.08 8.25 16 29 O -0.45 -8.79 14.19 5.61 0.08 -8.72 16 30 H 0.09 2.32 6.26 -51.93 -0.33 1.99 16 31 H 0.03 0.69 7.07 -51.93 -0.37 0.32 16 32 H 0.01 0.22 6.52 -51.93 -0.34 -0.11 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.05 0.97 6.17 -51.93 -0.32 0.65 16 35 H 0.02 0.43 6.57 -51.93 -0.34 0.09 16 36 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 37 H 0.06 1.14 7.42 -51.92 -0.39 0.76 16 38 H 0.12 2.59 5.93 -51.93 -0.31 2.28 16 39 H 0.12 0.83 7.74 -51.93 -0.40 0.43 16 40 H 0.12 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.09 0.59 8.08 -51.93 -0.42 0.17 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 46 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 47 H 0.13 2.12 7.56 -52.49 -0.40 1.72 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -31.79 375.25 -9.99 -41.78 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.89 Total: 3.29 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -3.05 Total: -3.32 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.85 Total: -47.25 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.17 Total: -17.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.79 -9.99 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788773258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.396 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds