Wall clock time and date at job start Tue Mar 31 2020 15:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47085 * 2 1 4 4 C 1.50697 * 109.47330 * 240.00228 * 2 1 3 5 5 H 1.07999 * 120.00016 * 240.00196 * 4 2 1 6 6 C 1.37885 * 119.99746 * 59.99501 * 4 2 1 7 7 N 1.31506 * 120.00149 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99568 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46779 * 90.00921 * 8 6 4 10 10 H 1.48504 * 109.46744 * 209.99917 * 8 6 4 11 11 H 1.48492 * 109.47487 * 330.00318 * 8 6 4 12 12 N 1.46899 * 109.47130 * 119.99926 * 2 1 3 13 13 C 1.46900 * 111.00227 * 290.20287 * 12 2 1 14 14 C 1.46903 * 110.99900 * 54.16059 * 12 2 1 15 15 N 1.46498 * 109.47403 * 151.18439 * 14 12 2 16 16 C 1.33877 * 122.75878 * 90.01933 * 15 14 12 17 17 O 1.21226 * 125.40328 * 359.97438 * 16 15 14 18 18 C 1.51315 * 109.20297 * 180.02562 * 16 15 14 19 19 C 1.54228 * 103.55674 * 0.02562 * 18 16 15 20 20 H 1.09002 * 110.60280 * 241.33089 * 19 18 16 21 21 C 1.52997 * 110.60838 * 118.51834 * 19 18 16 22 22 C 1.50694 * 109.47313 * 174.99877 * 21 19 18 23 23 C 1.38239 * 120.00244 * 269.72929 * 22 21 19 24 24 C 1.38234 * 119.99731 * 179.81144 * 23 22 21 25 25 C 1.38231 * 120.00223 * 0.39595 * 24 23 22 26 26 C 1.38239 * 120.00148 * 359.85372 * 25 24 23 27 27 C 1.38231 * 119.99860 * 359.96131 * 26 25 24 28 28 C 1.33872 * 122.75940 * 269.73323 * 15 14 12 29 29 O 1.21218 * 125.39850 * 359.97438 * 28 15 14 30 30 H 1.08999 * 109.47583 * 53.79032 * 1 2 3 31 31 H 1.09001 * 109.47260 * 173.79291 * 1 2 3 32 32 H 1.08997 * 109.47344 * 293.79145 * 1 2 3 33 33 H 0.97000 * 120.00364 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.46655 * 183.95583 * 13 12 2 35 35 H 1.08993 * 109.47145 * 63.94939 * 13 12 2 36 36 H 1.09002 * 109.46821 * 303.95180 * 13 12 2 37 37 H 1.09007 * 109.46431 * 271.18763 * 14 12 2 38 38 H 1.08999 * 109.47080 * 31.17992 * 14 12 2 39 39 H 1.08994 * 110.60930 * 118.52176 * 18 16 15 40 40 H 1.09009 * 110.60373 * 241.48448 * 18 16 15 41 41 H 1.08998 * 109.47105 * 295.00330 * 21 19 18 42 42 H 1.08999 * 109.46835 * 54.99770 * 21 19 18 43 43 H 1.07997 * 119.99523 * 359.97438 * 23 22 21 44 44 H 1.08004 * 119.99877 * 180.22632 * 24 23 22 45 45 H 1.08004 * 120.00179 * 179.84186 * 25 24 23 46 46 H 1.07996 * 120.00008 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00004 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4872 -0.1400 -5.1121 11 1 3.6308 -1.7563 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 1.7486 0.0950 2.4095 14 6 1.4380 -2.0373 1.3052 15 7 2.3694 -2.9178 2.0146 16 6 2.3521 -3.0699 3.3446 17 8 1.5879 -2.5154 4.1050 18 6 3.4383 -4.0428 3.7485 19 6 4.0937 -4.4302 2.4073 20 1 3.9914 -5.5000 2.2251 21 6 5.5680 -4.0213 2.3904 22 6 6.2129 -4.5193 1.1227 23 6 6.8038 -5.7687 1.0925 24 6 7.3919 -6.2270 -0.0715 25 6 7.3965 -5.4327 -1.2028 26 6 6.8102 -4.1812 -1.1711 27 6 6.2187 -3.7244 -0.0083 28 6 3.3043 -3.6408 1.3857 29 8 3.4913 -3.6575 0.1882 30 1 -0.3634 0.6071 -0.8291 31 1 -0.3634 -1.0216 -0.1111 32 1 -0.3634 0.4146 0.9403 33 1 0.7093 1.1619 -3.4843 34 1 2.1830 -0.4066 3.2742 35 1 0.6716 0.1900 2.5476 36 1 2.1903 1.0860 2.3046 37 1 0.4980 -1.9844 1.8546 38 1 1.2533 -2.4328 0.3064 39 1 4.1627 -3.5588 4.4034 40 1 3.0075 -4.9194 4.2327 41 1 5.6442 -2.9349 2.4343 42 1 6.0755 -4.4563 3.2514 43 1 6.8035 -6.3877 1.9774 44 1 7.8503 -7.2046 -0.0963 45 1 7.8583 -5.7898 -2.1115 46 1 6.8142 -3.5605 -2.0549 47 1 5.7603 -2.7469 0.0164 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788773258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:13 Heat of formation + Delta-G solvation = -47.340194 kcal Electronic energy + Delta-G solvation = -29544.142708 eV Core-core repulsion = 25691.518112 eV Total energy + Delta-G solvation = -3852.624596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.87338 -40.15315 -39.35811 -38.89860 -36.83208 -35.52436 -34.55502 -32.30869 -31.65292 -30.73527 -28.61363 -27.74110 -27.21105 -25.82330 -24.97766 -23.40133 -22.84282 -22.11619 -21.50414 -20.15103 -18.61043 -18.14396 -17.82732 -17.59476 -17.14400 -16.83930 -16.23812 -16.07357 -15.73211 -15.55935 -15.44498 -15.17137 -14.94775 -14.82158 -14.42110 -14.36547 -14.14294 -13.95035 -13.85335 -13.32843 -13.31805 -13.17512 -12.90429 -12.88146 -12.76659 -12.62055 -12.45573 -12.24061 -12.11217 -11.98814 -11.84269 -11.73595 -11.28956 -11.08873 -10.82318 -10.76205 -10.52546 -9.68672 -9.49631 -9.15510 -8.16669 -6.24376 0.51328 0.62090 0.68974 1.33531 1.34964 1.47805 1.61222 1.93623 2.38241 2.95445 3.12470 3.18658 3.26758 3.40701 3.53409 3.98435 4.01847 4.09237 4.10938 4.25190 4.30467 4.37039 4.41080 4.45767 4.50576 4.59592 4.64126 4.72215 4.72345 4.79365 4.80203 4.84783 4.92781 4.97342 5.03302 5.08325 5.26238 5.28164 5.35820 5.59352 5.66179 5.73539 5.74357 5.82908 5.99582 6.09268 6.24590 6.28924 6.52213 6.56414 6.84246 6.99239 7.44199 8.90062 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009362 B = 0.005522 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.078617 B = 5069.357832 C = 7620.575574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.223 3.777 3 H 0.015 0.985 4 C -0.510 4.510 5 H 0.056 0.944 6 C 0.020 3.980 7 N -0.917 5.917 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.554 5.554 13 C 0.035 3.965 14 C 0.280 3.720 15 N -0.571 5.571 16 C 0.518 3.482 17 O -0.523 6.523 18 C -0.131 4.131 19 C -0.104 4.104 20 H 0.149 0.851 21 C -0.058 4.058 22 C -0.096 4.096 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.148 4.148 27 C -0.106 4.106 28 C 0.513 3.487 29 O -0.497 6.497 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.063 0.937 42 H 0.140 0.860 43 H 0.162 0.838 44 H 0.149 0.851 45 H 0.132 0.868 46 H 0.102 0.898 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.212 -16.189 14.155 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.116 3.884 3 H 0.033 0.967 4 C -0.549 4.549 5 H 0.074 0.926 6 C -0.179 4.179 7 N -0.557 5.557 8 Si 0.774 3.226 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.205 1.205 12 N -0.279 5.279 13 C -0.114 4.114 14 C 0.069 3.931 15 N -0.314 5.314 16 C 0.309 3.691 17 O -0.398 6.398 18 C -0.170 4.170 19 C -0.125 4.125 20 H 0.166 0.834 21 C -0.095 4.095 22 C -0.096 4.096 23 C -0.126 4.126 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.166 4.166 27 C -0.124 4.124 28 C 0.302 3.698 29 O -0.368 6.368 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.168 0.832 40 H 0.176 0.824 41 H 0.082 0.918 42 H 0.158 0.842 43 H 0.180 0.820 44 H 0.167 0.833 45 H 0.150 0.850 46 H 0.120 0.880 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.321 -15.804 13.693 23.779 hybrid contribution -1.195 0.818 -1.800 2.310 sum 10.126 -14.987 11.893 21.647 Atomic orbital electron populations 1.22222 0.99640 0.99791 0.99755 1.19057 0.90305 0.92950 0.86098 0.96730 1.21364 1.30481 1.12353 0.90669 0.92581 1.25509 0.95435 0.95690 1.01276 1.69989 1.37870 1.23843 1.23967 0.85711 0.78644 0.78409 0.79789 1.20350 1.20411 1.20510 1.61839 1.59905 1.02382 1.03748 1.22338 0.98794 0.98081 0.92156 1.21764 0.88285 0.86196 0.96892 1.47195 1.33469 1.40219 1.10544 1.21743 0.85040 0.81771 0.80528 1.90722 1.43038 1.50379 1.55699 1.22715 0.96093 1.00479 0.97670 1.22180 0.95391 1.02951 0.91944 0.83368 1.20591 0.90812 1.01548 0.96587 1.19941 0.99247 0.95256 0.95107 1.21393 0.97068 0.94697 0.99411 1.21473 0.99977 1.00477 0.92744 1.21359 0.99797 0.93845 0.99856 1.21232 0.99870 0.97672 0.97850 1.21028 0.97620 0.99599 0.94193 1.21691 0.79512 0.79072 0.89515 1.90812 1.66234 1.63302 1.16452 0.91715 0.95326 0.95104 0.92914 0.91587 0.95888 0.91992 0.92326 0.89801 0.83247 0.82373 0.91823 0.84242 0.82034 0.83285 0.84996 0.87959 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.63 8.26 71.98 0.59 -7.04 16 2 C 0.22 11.62 2.29 44.17 0.10 11.72 16 3 H 0.01 0.85 8.02 -2.38 -0.02 0.83 16 4 C -0.51 -29.29 7.59 25.60 0.19 -29.09 16 5 H 0.06 3.39 6.91 -2.91 -0.02 3.37 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.92 -53.72 11.39 21.45 0.24 -53.48 16 8 Si 0.95 46.89 29.54 68.60 2.03 48.92 16 9 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 12 N -0.55 -24.76 4.80 -913.85 -4.39 -29.15 16 13 C 0.03 1.33 9.06 127.69 1.16 2.49 16 14 C 0.28 11.54 3.87 170.81 0.66 12.20 16 15 N -0.57 -18.83 2.80 -767.03 -2.14 -20.97 16 16 C 0.52 13.70 7.51 87.99 0.66 14.36 16 17 O -0.52 -16.89 16.08 -2.86 -0.05 -16.94 16 18 C -0.13 -1.65 6.67 30.46 0.20 -1.44 16 19 C -0.10 -1.75 3.06 -10.93 -0.03 -1.78 16 20 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 21 C -0.06 -0.92 4.67 29.85 0.14 -0.78 16 22 C -0.10 -2.13 4.84 -19.87 -0.10 -2.23 16 23 C -0.11 -1.82 9.70 22.27 0.22 -1.60 16 24 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 25 C -0.13 -3.09 10.05 22.27 0.22 -2.86 16 26 C -0.15 -4.52 10.05 22.27 0.22 -4.29 16 27 C -0.11 -3.34 7.71 22.27 0.17 -3.17 16 28 C 0.51 16.18 7.26 88.00 0.64 16.82 16 29 O -0.50 -20.70 14.19 -2.84 -0.04 -20.74 16 30 H 0.06 3.51 6.26 -2.39 -0.01 3.50 16 31 H 0.03 1.37 7.07 -2.39 -0.02 1.35 16 32 H 0.03 1.35 6.52 -2.39 -0.02 1.33 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.07 2.38 6.17 -2.39 -0.01 2.36 16 35 H 0.02 0.88 6.57 -2.39 -0.02 0.86 16 36 H 0.06 2.34 8.06 -2.39 -0.02 2.32 16 37 H 0.06 2.36 7.42 -2.38 -0.02 2.34 16 38 H 0.08 3.99 5.93 -2.39 -0.01 3.97 16 39 H 0.15 1.10 7.74 -2.39 -0.02 1.09 16 40 H 0.16 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.06 1.26 8.07 -2.39 -0.02 1.24 16 42 H 0.14 0.86 8.08 -2.39 -0.02 0.84 16 43 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 45 H 0.13 2.55 8.06 -2.91 -0.02 2.52 16 46 H 0.10 3.26 8.06 -2.91 -0.02 3.23 16 47 H 0.09 3.28 7.56 -2.91 -0.02 3.25 16 Total: -1.00 -76.81 375.25 2.35 -74.46 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.97 Total: 15.17 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.73 Total: 2.73 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -6.29 Total: -103.60 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.09 Total: -37.68 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -76.81 2.35 -74.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788773258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.118 kcal (2) G-P(sol) polarization free energy of solvation -76.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds