Wall clock time and date at job start Tue Mar 31 2020 17:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.46854 * 2 1 4 4 C 1.46905 * 110.99934 * 196.17167 * 3 2 1 5 5 C 1.50694 * 109.46895 * 66.04359 * 4 3 2 6 6 H 1.07997 * 120.00693 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99851 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47082 * 90.00504 * 9 7 5 11 11 H 1.48500 * 109.46851 * 210.00012 * 9 7 5 12 12 H 1.48497 * 109.47296 * 330.00168 * 9 7 5 13 13 C 1.46901 * 111.00091 * 72.21499 * 3 2 1 14 14 C 1.50705 * 109.47054 * 188.46866 * 13 3 2 15 15 C 1.38315 * 119.92317 * 258.10945 * 14 13 3 16 16 C 1.38077 * 120.07320 * 179.72522 * 15 14 13 17 17 C 1.38939 * 119.92517 * 0.54988 * 16 15 14 18 18 N 1.39670 * 120.07540 * 179.70674 * 17 16 15 19 19 C 1.46498 * 120.00108 * 180.97571 * 18 17 16 20 20 C 1.46500 * 120.00245 * 0.97040 * 18 17 16 21 21 C 1.38895 * 119.84924 * 359.72359 * 17 16 15 22 22 C 1.38126 * 119.92484 * 0.02562 * 21 17 16 23 23 C 1.50697 * 119.96451 * 179.97438 * 22 21 17 24 24 F 1.39902 * 109.46911 * 357.48400 * 23 22 21 25 25 F 1.39902 * 109.47058 * 117.47802 * 23 22 21 26 26 F 1.39901 * 109.47302 * 237.48052 * 23 22 21 27 27 H 1.08995 * 109.47312 * 62.77927 * 1 2 3 28 28 H 1.08999 * 109.46858 * 182.78169 * 1 2 3 29 29 H 1.09006 * 109.46915 * 302.77622 * 1 2 3 30 30 H 1.09002 * 109.46750 * 240.00200 * 2 1 3 31 31 H 1.08994 * 109.47389 * 119.99695 * 2 1 3 32 32 H 1.08998 * 109.47031 * 186.04890 * 4 3 2 33 33 H 1.08997 * 109.46662 * 306.04178 * 4 3 2 34 34 H 0.96999 * 119.99961 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47592 * 308.46880 * 13 3 2 36 36 H 1.09005 * 109.46950 * 68.47461 * 13 3 2 37 37 H 1.07997 * 119.96161 * 359.97438 * 15 14 13 38 38 H 1.07994 * 120.03934 * 180.27435 * 16 15 14 39 39 H 1.09005 * 109.47218 * 5.27427 * 19 18 17 40 40 H 1.08997 * 109.47365 * 125.26937 * 19 18 17 41 41 H 1.09000 * 109.47140 * 245.27132 * 19 18 17 42 42 H 1.09000 * 109.46898 * 89.99905 * 20 18 17 43 43 H 1.08995 * 109.47529 * 210.00822 * 20 18 17 44 44 H 1.09004 * 109.47332 * 330.00891 * 20 18 17 45 45 H 1.07995 * 120.03612 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4370 1.4423 -0.3820 5 6 3.5883 1.0085 -1.8172 6 1 2.7187 0.7195 -2.3886 7 6 4.8371 0.9815 -2.4012 8 7 5.8961 1.3339 -1.7055 9 14 5.0247 0.4444 -4.1804 10 1 4.9078 1.6279 -5.0697 11 1 6.3554 -0.1870 -4.3692 12 1 3.9600 -0.5346 -4.5168 13 6 1.8002 2.0210 1.3059 14 6 2.1196 3.4906 1.2089 15 6 3.3214 3.9692 1.6985 16 6 3.6197 5.3142 1.6062 17 6 2.7061 6.1889 1.0310 18 7 3.0020 7.5510 0.9416 19 6 2.0286 8.4750 0.3542 20 6 4.2857 8.0557 1.4352 21 6 1.4978 5.7057 0.5455 22 6 1.2080 4.3583 0.6364 23 6 -0.1030 3.8332 0.1105 24 9 -0.8747 4.8986 -0.3656 25 9 0.1400 2.9314 -0.9312 26 9 -0.7913 3.1822 1.1399 27 1 -0.3634 0.4700 -0.9138 28 1 -0.3633 -1.0265 0.0499 29 1 -0.3633 0.5564 0.8641 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8899 32 1 3.8023 2.4632 -0.2704 33 1 4.0137 0.7778 0.2613 34 1 6.7746 1.3152 -2.1165 35 1 0.7587 1.8943 1.6013 36 1 2.4479 1.5567 2.0496 37 1 4.0290 3.2895 2.1498 38 1 4.5601 5.6866 1.9846 39 1 1.1061 7.9384 0.1326 40 1 1.8204 9.2798 1.0592 41 1 2.4352 8.8943 -0.5661 42 1 5.0201 8.0295 0.6302 43 1 4.1635 9.0816 1.7824 44 1 4.6287 7.4313 2.2602 45 1 0.7857 6.3828 0.0975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792776215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:18 Heat of formation + Delta-G solvation = -98.731461 kcal Electronic energy + Delta-G solvation = -30425.614067 eV Core-core repulsion = 26028.904238 eV Total energy + Delta-G solvation = -4396.709829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.63332 -47.26376 -46.85879 -39.72892 -37.32977 -35.77418 -32.58041 -31.72291 -31.18790 -29.45913 -28.48081 -27.28764 -25.47114 -25.08633 -23.28124 -22.29267 -21.78017 -20.56209 -19.63214 -18.01169 -17.85601 -17.78571 -16.36237 -16.22765 -15.68538 -15.30246 -15.12092 -14.61567 -14.46157 -14.19149 -14.00758 -13.89276 -13.68141 -13.56209 -13.40377 -13.22008 -13.11726 -12.94079 -12.70659 -12.59689 -12.48413 -12.22093 -12.01639 -11.96601 -11.71453 -11.54108 -11.16748 -10.98314 -10.82126 -10.64671 -10.58554 -10.37070 -10.09161 -9.85352 -9.48819 -9.10391 -8.81684 -8.35080 -7.21434 -7.05824 -5.95808 -3.94864 1.35508 1.73172 3.03545 3.26232 3.36362 3.42026 3.46168 3.85829 4.22989 4.49269 4.58540 4.81794 4.95750 4.98328 5.13049 5.20292 5.21398 5.33912 5.35569 5.40672 5.50287 5.56898 5.63422 5.64842 5.78393 5.82976 5.97254 6.03713 6.08102 6.17430 6.21608 6.30298 6.47976 6.52194 6.80832 6.85655 6.88463 6.91886 7.23569 7.41465 7.43016 7.50626 7.88984 8.18628 8.31188 8.64323 9.12811 9.68198 11.15153 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.005352 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.717226 B = 5230.131673 C = 6778.676797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 N -0.523 5.523 4 C 0.192 3.808 5 C -0.500 4.500 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 C 0.074 3.926 14 C -0.064 4.064 15 C -0.058 4.058 16 C -0.164 4.164 17 C 0.204 3.796 18 N -0.640 5.640 19 C 0.091 3.909 20 C 0.096 3.904 21 C -0.161 4.161 22 C -0.115 4.115 23 C 0.507 3.493 24 F -0.192 7.192 25 F -0.142 7.142 26 F -0.184 7.184 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.016 0.984 32 H 0.037 0.963 33 H -0.013 1.013 34 H 0.259 0.741 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 11.505 8.750 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 N -0.248 5.248 4 C 0.067 3.933 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 C -0.054 4.054 14 C -0.066 4.066 15 C -0.078 4.078 16 C -0.186 4.186 17 C 0.104 3.896 18 N -0.353 5.353 19 C -0.052 4.052 20 C -0.047 4.047 21 C -0.183 4.183 22 C -0.118 4.118 23 C 0.453 3.547 24 F -0.174 7.174 25 F -0.123 7.123 26 F -0.166 7.166 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.005 0.995 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.278 11.940 8.348 16.757 hybrid contribution 0.675 -0.668 -0.567 1.106 sum -7.603 11.272 7.781 15.666 Atomic orbital electron populations 1.21841 0.96719 0.99918 1.01834 1.21944 0.94081 0.90083 1.00840 1.62247 1.23120 1.15888 1.23520 1.19764 0.80854 0.97124 0.95601 1.21171 0.92723 1.43368 0.96581 0.91904 1.24949 0.95913 0.95819 0.97873 1.69956 0.98508 1.49056 1.36442 0.86562 0.77160 0.78769 0.85304 1.20785 1.21468 1.19872 1.21259 1.01174 0.89890 0.93032 1.19324 0.93714 0.95267 0.98328 1.20822 0.95068 0.94557 0.97306 1.20783 0.99800 0.93255 1.04786 1.17549 0.93191 0.83724 0.95126 1.46166 1.18046 1.03789 1.67338 1.21673 0.92993 0.92991 0.97593 1.21588 0.84858 0.99154 0.99140 1.20339 0.97624 0.94263 1.06121 1.19432 0.94229 0.94338 1.03789 1.18284 0.84333 0.75668 0.76448 1.93098 1.77959 1.57267 1.89066 1.93389 1.93983 1.67184 1.57755 1.93107 1.81687 1.82112 1.59661 0.92149 0.93609 0.93661 0.89537 0.96561 0.94527 0.99530 0.93160 0.90175 0.94743 0.85213 0.85549 0.90416 0.92795 0.93055 0.93328 0.91800 0.91290 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.68 37.16 0.36 -2.08 16 2 C 0.06 1.16 5.53 -3.82 -0.02 1.14 16 3 N -0.52 -11.31 2.73 -237.51 -0.65 -11.96 16 4 C 0.19 4.95 4.56 -4.98 -0.02 4.93 16 5 C -0.50 -14.13 8.28 -34.44 -0.29 -14.41 16 6 H 0.06 1.78 7.26 -52.49 -0.38 1.40 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.07 1.38 4.20 -4.97 -0.02 1.36 16 14 C -0.06 -1.15 4.45 -104.58 -0.47 -1.62 16 15 C -0.06 -0.98 8.58 -39.61 -0.34 -1.32 16 16 C -0.16 -2.48 9.21 -39.38 -0.36 -2.84 16 17 C 0.20 3.02 6.55 -83.78 -0.55 2.47 16 18 N -0.64 -7.69 3.41 -187.55 -0.64 -8.33 16 19 C 0.09 0.86 10.61 59.85 0.64 1.50 16 20 C 0.10 0.90 10.26 59.85 0.61 1.51 16 21 C -0.16 -2.51 8.68 -39.38 -0.34 -2.85 16 22 C -0.12 -2.00 5.37 -104.66 -0.56 -2.57 16 23 C 0.51 8.71 2.87 36.00 0.10 8.81 16 24 F -0.19 -3.05 15.97 2.25 0.04 -3.01 16 25 F -0.14 -2.81 14.27 2.25 0.03 -2.78 16 26 F -0.18 -3.01 15.17 2.25 0.03 -2.97 16 27 H 0.06 1.06 7.55 -51.93 -0.39 0.67 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.72 6.54 -51.93 -0.34 0.38 16 30 H 0.09 1.89 6.59 -51.93 -0.34 1.55 16 31 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 32 H 0.04 1.01 6.14 -51.93 -0.32 0.69 16 33 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 35 H 0.08 1.40 4.14 -51.93 -0.21 1.18 16 36 H 0.03 0.63 7.97 -51.93 -0.41 0.21 16 37 H 0.13 2.09 8.02 -52.49 -0.42 1.67 16 38 H 0.13 1.62 6.12 -52.49 -0.32 1.30 16 39 H 0.08 0.75 5.32 -51.93 -0.28 0.47 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 44 H 0.07 0.61 6.16 -51.93 -0.32 0.29 16 45 H 0.13 1.82 4.85 -52.49 -0.25 1.57 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -31.17 361.76 -7.45 -38.63 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.08 Total: -1.58 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.36 Total: -4.47 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.55 Total: -46.29 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 0.10 Total: -8.76 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.17 -7.45 -38.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792776215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.103 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds