Wall clock time and date at job start Tue Mar 31 2020 17:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.46854 * 2 1 4 4 C 1.46905 * 110.99934 * 196.17167 * 3 2 1 5 5 C 1.50694 * 109.46895 * 66.04359 * 4 3 2 6 6 H 1.07997 * 120.00693 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99851 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99980 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47082 * 90.00504 * 9 7 5 11 11 H 1.48500 * 109.46851 * 210.00012 * 9 7 5 12 12 H 1.48497 * 109.47296 * 330.00168 * 9 7 5 13 13 C 1.46901 * 111.00091 * 72.21499 * 3 2 1 14 14 C 1.50705 * 109.47054 * 188.46866 * 13 3 2 15 15 C 1.38315 * 119.92317 * 258.10945 * 14 13 3 16 16 C 1.38077 * 120.07320 * 179.72522 * 15 14 13 17 17 C 1.38939 * 119.92517 * 0.54988 * 16 15 14 18 18 N 1.39670 * 120.07540 * 179.70674 * 17 16 15 19 19 C 1.46498 * 120.00108 * 180.97571 * 18 17 16 20 20 C 1.46500 * 120.00245 * 0.97040 * 18 17 16 21 21 C 1.38895 * 119.84924 * 359.72359 * 17 16 15 22 22 C 1.38126 * 119.92484 * 0.02562 * 21 17 16 23 23 C 1.50697 * 119.96451 * 179.97438 * 22 21 17 24 24 F 1.39902 * 109.46911 * 357.48400 * 23 22 21 25 25 F 1.39902 * 109.47058 * 117.47802 * 23 22 21 26 26 F 1.39901 * 109.47302 * 237.48052 * 23 22 21 27 27 H 1.08995 * 109.47312 * 62.77927 * 1 2 3 28 28 H 1.08999 * 109.46858 * 182.78169 * 1 2 3 29 29 H 1.09006 * 109.46915 * 302.77622 * 1 2 3 30 30 H 1.09002 * 109.46750 * 240.00200 * 2 1 3 31 31 H 1.08994 * 109.47389 * 119.99695 * 2 1 3 32 32 H 1.08998 * 109.47031 * 186.04890 * 4 3 2 33 33 H 1.08997 * 109.46662 * 306.04178 * 4 3 2 34 34 H 0.96999 * 119.99961 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47592 * 308.46880 * 13 3 2 36 36 H 1.09005 * 109.46950 * 68.47461 * 13 3 2 37 37 H 1.07997 * 119.96161 * 359.97438 * 15 14 13 38 38 H 1.07994 * 120.03934 * 180.27435 * 16 15 14 39 39 H 1.09005 * 109.47218 * 5.27427 * 19 18 17 40 40 H 1.08997 * 109.47365 * 125.26937 * 19 18 17 41 41 H 1.09000 * 109.47140 * 245.27132 * 19 18 17 42 42 H 1.09000 * 109.46898 * 89.99905 * 20 18 17 43 43 H 1.08995 * 109.47529 * 210.00822 * 20 18 17 44 44 H 1.09004 * 109.47332 * 330.00891 * 20 18 17 45 45 H 1.07995 * 120.03612 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4370 1.4423 -0.3820 5 6 3.5883 1.0085 -1.8172 6 1 2.7187 0.7195 -2.3886 7 6 4.8371 0.9815 -2.4012 8 7 5.8961 1.3339 -1.7055 9 14 5.0247 0.4444 -4.1804 10 1 4.9078 1.6279 -5.0697 11 1 6.3554 -0.1870 -4.3692 12 1 3.9600 -0.5346 -4.5168 13 6 1.8002 2.0210 1.3059 14 6 2.1196 3.4906 1.2089 15 6 3.3214 3.9692 1.6985 16 6 3.6197 5.3142 1.6062 17 6 2.7061 6.1889 1.0310 18 7 3.0020 7.5510 0.9416 19 6 2.0286 8.4750 0.3542 20 6 4.2857 8.0557 1.4352 21 6 1.4978 5.7057 0.5455 22 6 1.2080 4.3583 0.6364 23 6 -0.1030 3.8332 0.1105 24 9 -0.8747 4.8986 -0.3656 25 9 0.1400 2.9314 -0.9312 26 9 -0.7913 3.1822 1.1399 27 1 -0.3634 0.4700 -0.9138 28 1 -0.3633 -1.0265 0.0499 29 1 -0.3633 0.5564 0.8641 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8899 32 1 3.8023 2.4632 -0.2704 33 1 4.0137 0.7778 0.2613 34 1 6.7746 1.3152 -2.1165 35 1 0.7587 1.8943 1.6013 36 1 2.4479 1.5567 2.0496 37 1 4.0290 3.2895 2.1498 38 1 4.5601 5.6866 1.9846 39 1 1.1061 7.9384 0.1326 40 1 1.8204 9.2798 1.0592 41 1 2.4352 8.8943 -0.5661 42 1 5.0201 8.0295 0.6302 43 1 4.1635 9.0816 1.7824 44 1 4.6287 7.4313 2.2602 45 1 0.7857 6.3828 0.0975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792776215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:17 Heat of formation + Delta-G solvation = -115.081164 kcal Electronic energy + Delta-G solvation = -30426.323043 eV Core-core repulsion = 26028.904238 eV Total energy + Delta-G solvation = -4397.418806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.98816 -48.57562 -48.28910 -40.93461 -38.76823 -37.03721 -34.71104 -32.94444 -32.48641 -31.08471 -29.38770 -28.89295 -26.96516 -26.32806 -24.67574 -24.03893 -23.05067 -21.89046 -21.19100 -19.32036 -19.22263 -18.99571 -18.48372 -17.40230 -16.92732 -16.75054 -16.31972 -16.16184 -15.89407 -15.59147 -15.39181 -15.26962 -15.07878 -14.96651 -14.67607 -14.53799 -14.50988 -14.42758 -14.20755 -13.86737 -13.71310 -13.52965 -13.31903 -13.17709 -12.86639 -12.83678 -12.73843 -12.60173 -12.53447 -12.36556 -12.22289 -11.80448 -11.74544 -11.55301 -11.18773 -10.72246 -10.54837 -10.07447 -8.89612 -8.21228 -8.13807 -6.21700 0.09833 0.47693 1.40387 1.41538 1.52309 1.82517 2.21318 2.42573 2.60668 2.91088 3.17799 3.26788 3.42910 3.68887 3.80377 3.93174 4.07139 4.23548 4.24349 4.33063 4.45557 4.50624 4.53084 4.60408 4.63031 4.74353 4.77846 4.78957 4.84713 4.92075 4.97100 5.05176 5.11164 5.19318 5.24518 5.27875 5.44979 5.50018 5.56677 5.67296 5.72411 6.14796 6.31197 6.43546 6.46495 6.71501 6.94219 7.46100 8.95829 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.005352 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.717226 B = 5230.131673 C = 6778.676797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 N -0.527 5.527 4 C 0.212 3.788 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.079 3.921 14 C -0.092 4.092 15 C -0.070 4.070 16 C -0.169 4.169 17 C 0.208 3.792 18 N -0.641 5.641 19 C 0.083 3.917 20 C 0.088 3.912 21 C -0.168 4.168 22 C -0.127 4.127 23 C 0.509 3.491 24 F -0.184 7.184 25 F -0.161 7.161 26 F -0.179 7.179 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.017 0.983 33 H -0.043 1.043 34 H 0.262 0.738 35 H 0.093 0.907 36 H 0.033 0.967 37 H 0.126 0.874 38 H 0.148 0.852 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 12.942 8.555 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.072 4.072 3 N -0.251 5.251 4 C 0.086 3.914 5 C -0.553 4.553 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.784 3.216 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.191 1.191 13 C -0.048 4.048 14 C -0.095 4.095 15 C -0.090 4.090 16 C -0.192 4.192 17 C 0.105 3.895 18 N -0.352 5.352 19 C -0.059 4.059 20 C -0.054 4.054 21 C -0.191 4.191 22 C -0.129 4.129 23 C 0.455 3.545 24 F -0.165 7.165 25 F -0.142 7.142 26 F -0.161 7.161 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.035 0.965 33 H -0.026 1.026 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.052 0.948 37 H 0.144 0.856 38 H 0.165 0.835 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.970 13.409 8.161 18.079 hybrid contribution 0.886 -0.990 -0.451 1.403 sum -8.084 12.419 7.710 16.704 Atomic orbital electron populations 1.21724 0.93894 1.01711 1.01652 1.21980 0.96309 0.89045 0.99853 1.62179 1.20115 1.17044 1.25774 1.19348 0.83030 0.94881 0.94137 1.21447 0.92730 1.43439 0.97727 0.92533 1.25769 0.95571 0.95779 1.02144 1.70072 0.98956 1.49880 1.38240 0.85536 0.77439 0.78519 0.80057 1.20331 1.20712 1.19078 1.21257 1.01810 0.90443 0.91334 1.19323 0.94821 0.94886 1.00466 1.20910 0.94795 0.95561 0.97689 1.21007 1.00804 0.92649 1.04705 1.17692 0.92635 0.85201 0.93951 1.46502 1.19264 1.02906 1.66573 1.21879 0.92341 0.93063 0.98595 1.21794 0.83662 1.00751 0.99175 1.20564 0.98433 0.93852 1.06202 1.19536 0.94153 0.95121 1.04093 1.18261 0.84623 0.75530 0.76070 1.93106 1.77707 1.56719 1.88978 1.93348 1.94170 1.67956 1.58690 1.93106 1.81571 1.82076 1.59326 0.93138 0.90928 0.92820 0.92009 0.96042 0.96523 1.02557 0.92958 0.88884 0.94847 0.85591 0.83477 0.90735 0.90285 0.92222 0.93568 0.88998 0.90910 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.68 71.98 0.70 -3.61 16 2 C 0.06 2.26 5.53 86.30 0.48 2.74 16 3 N -0.53 -23.35 2.73 -905.36 -2.47 -25.82 16 4 C 0.21 11.40 4.56 85.55 0.39 11.80 16 5 C -0.51 -29.83 8.28 25.60 0.21 -29.61 16 6 H 0.06 3.28 7.26 -2.91 -0.02 3.26 16 7 C 0.01 0.30 5.46 84.66 0.46 0.76 16 8 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 9 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 C 0.08 3.00 4.20 85.56 0.36 3.36 16 14 C -0.09 -3.39 4.45 -19.84 -0.09 -3.48 16 15 C -0.07 -2.42 8.58 22.25 0.19 -2.23 16 16 C -0.17 -5.04 9.21 22.40 0.21 -4.83 16 17 C 0.21 5.89 6.55 38.22 0.25 6.14 16 18 N -0.64 -13.89 3.41 -747.28 -2.55 -16.43 16 19 C 0.08 1.35 10.61 127.77 1.36 2.70 16 20 C 0.09 1.43 10.26 127.77 1.31 2.74 16 21 C -0.17 -5.07 8.68 22.40 0.19 -4.88 16 22 C -0.13 -4.38 5.37 -19.89 -0.11 -4.48 16 23 C 0.51 17.27 2.87 71.23 0.20 17.47 16 24 F -0.18 -5.62 15.97 44.97 0.72 -4.90 16 25 F -0.16 -6.36 14.27 44.97 0.64 -5.72 16 26 F -0.18 -5.71 15.17 44.97 0.68 -5.03 16 27 H 0.05 1.74 7.55 -2.39 -0.02 1.72 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.64 6.54 -2.38 -0.02 1.63 16 30 H 0.06 2.77 6.59 -2.39 -0.02 2.75 16 31 H 0.02 0.83 8.05 -2.39 -0.02 0.81 16 32 H 0.02 0.96 6.14 -2.39 -0.01 0.94 16 33 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.09 3.23 4.14 -2.39 -0.01 3.22 16 36 H 0.03 1.25 7.97 -2.38 -0.02 1.24 16 37 H 0.13 4.28 8.02 -2.91 -0.02 4.25 16 38 H 0.15 3.61 6.12 -2.91 -0.02 3.59 16 39 H 0.07 1.25 5.32 -2.38 -0.01 1.24 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 0.99 8.07 -2.39 -0.02 0.97 16 44 H 0.07 1.13 6.16 -2.38 -0.01 1.11 16 45 H 0.15 3.87 4.85 -2.91 -0.01 3.86 16 Total: -1.00 -67.53 361.76 6.47 -61.06 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.02 Total: 10.75 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 6.12 Total: -5.42 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -4.73 Total: -98.26 kcal Atomic # 9 Polarization: -17.69 SS G_CDS: 2.04 Total: -15.65 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -67.53 6.47 -61.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792776215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.017 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds