Wall clock time and date at job start Tue Mar 31 2020 16:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47157 * 2 1 4 4 N 1.46500 * 109.46976 * 240.00138 * 2 1 3 5 5 C 1.34774 * 120.00127 * 85.00117 * 4 2 1 6 6 O 1.21288 * 119.99991 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00305 * 179.97438 * 5 4 2 8 8 C 1.50701 * 109.47266 * 179.97438 * 7 5 4 9 9 C 1.37633 * 120.12717 * 265.00187 * 8 7 5 10 10 C 1.38613 * 120.24357 * 179.97438 * 9 8 7 11 11 C 1.38650 * 120.50412 * 0.02562 * 10 9 8 12 12 C 1.37599 * 120.24902 * 0.02562 * 11 10 9 13 13 C 1.40703 * 120.12484 * 84.72800 * 8 7 5 14 14 C 1.41401 * 120.24080 * 359.97438 * 13 8 7 15 15 H 1.07995 * 120.00334 * 333.80533 * 14 13 8 16 16 C 1.39948 * 119.99329 * 153.80637 * 14 13 8 17 17 N 1.30819 * 120.00316 * 344.14884 * 16 14 13 18 18 Si 1.86801 * 119.99492 * 164.14224 * 16 14 13 19 19 H 1.48504 * 109.47087 * 90.00253 * 18 16 14 20 20 H 1.48499 * 109.47192 * 210.00023 * 18 16 14 21 21 H 1.48497 * 109.47331 * 330.00186 * 18 16 14 22 22 C 1.50698 * 109.47130 * 119.99774 * 2 1 3 23 23 O 1.21288 * 119.99929 * 98.38432 * 22 2 1 24 24 N 1.34775 * 120.00570 * 278.38255 * 22 2 1 25 25 C 1.47027 * 125.64342 * 355.35095 * 24 22 2 26 26 C 1.54328 * 107.39813 * 180.94488 * 25 24 22 27 27 C 1.55543 * 102.75999 * 22.24270 * 26 25 24 28 28 C 1.47416 * 125.65300 * 175.30781 * 24 22 2 29 29 H 1.08999 * 109.47285 * 52.40646 * 1 2 3 30 30 H 1.08997 * 109.47346 * 172.41018 * 1 2 3 31 31 H 1.09004 * 109.47275 * 292.40738 * 1 2 3 32 32 H 0.97001 * 119.99538 * 264.99913 * 4 2 1 33 33 H 1.08995 * 109.47072 * 299.99988 * 7 5 4 34 34 H 1.08997 * 109.46947 * 59.99607 * 7 5 4 35 35 H 1.08003 * 119.87620 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.74551 * 179.97438 * 10 9 8 37 37 H 1.08009 * 119.87762 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.12307 * 179.97438 * 12 11 10 39 39 H 0.97002 * 120.00177 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.88159 * 300.44039 * 25 24 22 41 41 H 1.09001 * 109.88343 * 61.45350 * 25 24 22 42 42 H 1.09004 * 110.71543 * 140.63531 * 26 25 24 43 43 H 1.08996 * 110.71872 * 263.90660 * 26 25 24 44 44 H 1.09001 * 110.96432 * 206.39655 * 27 26 25 45 45 H 1.08993 * 111.03042 * 82.55638 * 27 26 25 46 46 H 1.08999 * 110.36859 * 274.75150 * 28 24 22 47 47 H 1.09004 * 110.36723 * 36.96173 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8582 1.1585 -2.4117 7 6 2.6499 -0.7284 -3.5875 8 6 2.6999 0.2398 -4.7413 9 6 1.6447 0.3209 -5.6212 10 6 1.6879 1.2110 -6.6829 11 6 2.7919 2.0282 -6.8718 12 6 3.8587 1.9633 -6.0051 13 6 3.8230 1.0683 -4.9197 14 6 4.9102 0.9980 -4.0183 15 1 4.7498 0.6647 -3.0037 16 6 6.1941 1.3606 -4.4411 17 7 6.4574 1.4636 -5.7184 18 14 7.5317 1.6976 -3.1815 19 1 8.2567 0.4371 -2.8800 20 1 8.4841 2.6982 -3.7264 21 1 6.9177 2.2253 -1.9366 22 6 2.0323 -0.7103 1.2305 23 8 2.3789 -1.8706 1.1619 24 7 2.0966 -0.0564 2.4072 25 6 1.8021 1.3694 2.6122 26 6 2.0308 1.6775 4.1071 27 6 2.9901 0.5361 4.5502 28 6 2.4728 -0.6524 3.7020 29 1 -0.3634 0.6269 -0.8143 30 1 -0.3634 -1.0186 -0.1357 31 1 -0.3634 0.3917 0.9501 32 1 2.2490 -1.6318 -1.1526 33 1 3.6492 -1.1202 -3.3980 34 1 1.9777 -1.5507 -3.8325 35 1 0.7798 -0.3112 -5.4839 36 1 0.8556 1.2677 -7.3688 37 1 2.8151 2.7178 -7.7027 38 1 4.7178 2.6005 -6.1543 39 1 7.3474 1.7145 -6.0114 40 1 2.4700 1.9773 2.0020 41 1 0.7657 1.5760 2.3455 42 1 2.5036 2.6517 4.2320 43 1 1.0920 1.6297 4.6587 44 1 2.8857 0.3305 5.6156 45 1 4.0237 0.7744 4.2995 46 1 1.6038 -1.1076 4.1769 47 1 3.2604 -1.3933 3.5640 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798556601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:15 Heat of formation + Delta-G solvation = -58.037536 kcal Electronic energy + Delta-G solvation = -28322.885414 eV Core-core repulsion = 24469.796946 eV Total energy + Delta-G solvation = -3853.088468 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.52571 -39.10104 -37.70103 -37.16900 -34.63768 -33.57501 -32.26484 -31.67489 -30.26409 -29.39987 -29.21991 -26.72049 -25.22840 -24.83319 -22.94817 -21.56683 -20.88270 -20.44103 -19.60321 -19.23099 -17.56803 -17.08960 -16.91368 -16.22244 -15.87346 -15.32505 -15.11922 -14.60807 -14.53028 -14.36423 -13.89410 -13.71452 -13.61568 -13.37837 -13.06003 -12.93649 -12.85022 -12.54331 -12.37945 -12.31281 -11.72863 -11.66969 -11.62674 -11.58198 -11.52772 -11.12858 -11.10463 -10.95939 -10.93313 -10.66226 -10.35877 -9.95980 -9.43967 -9.33640 -9.18106 -9.11180 -8.92575 -8.78339 -7.26381 -7.24258 -6.68930 -4.29775 2.39280 2.60312 2.83693 3.03589 3.09015 3.14376 3.30730 3.34730 3.69332 3.97392 4.07028 4.19646 4.48669 4.56036 4.70871 4.88949 4.98306 5.06218 5.12388 5.27016 5.35209 5.40181 5.47449 5.48998 5.58504 5.63399 5.73902 5.78095 5.86807 5.99541 6.07150 6.10238 6.20680 6.33705 6.49479 6.55871 6.71062 6.85286 7.13404 7.21823 7.34601 7.47154 7.68970 7.90139 7.93592 8.00577 8.12673 8.17792 8.36545 8.69677 8.86067 8.96632 9.06347 10.25064 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.003552 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.329157 B = 7881.333626 C = 9368.365123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 H 0.107 0.893 4 N -0.731 5.731 5 C 0.520 3.480 6 O -0.521 6.521 7 C -0.070 4.070 8 C -0.180 4.180 9 C -0.081 4.081 10 C -0.240 4.240 11 C -0.107 4.107 12 C -0.159 4.159 13 C 0.129 3.871 14 C -0.456 4.456 15 H 0.073 0.927 16 C 0.077 3.923 17 N -0.796 5.796 18 Si 0.901 3.099 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.263 1.263 22 C 0.531 3.469 23 O -0.535 6.535 24 N -0.618 5.618 25 C 0.092 3.908 26 C -0.131 4.131 27 C -0.135 4.135 28 C 0.104 3.896 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.406 0.594 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.279 0.721 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.145 -1.667 18.179 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.124 0.876 4 N -0.387 5.387 5 C 0.308 3.692 6 O -0.395 6.395 7 C -0.109 4.109 8 C -0.181 4.181 9 C -0.099 4.099 10 C -0.259 4.259 11 C -0.126 4.126 12 C -0.178 4.178 13 C 0.127 3.873 14 C -0.486 4.486 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.422 5.422 18 Si 0.726 3.274 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.187 1.187 22 C 0.319 3.681 23 O -0.411 6.411 24 N -0.354 5.354 25 C -0.030 4.030 26 C -0.169 4.169 27 C -0.173 4.173 28 C -0.018 4.018 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.242 0.758 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.964 -1.414 17.832 19.196 hybrid contribution 0.781 -0.183 0.597 1.000 sum -6.183 -1.597 18.429 19.504 Atomic orbital electron populations 1.22082 0.93004 1.03316 1.02920 1.20596 0.95519 0.98073 0.83596 0.87561 1.46035 1.69673 1.14628 1.08412 1.21300 0.76392 0.87628 0.83920 1.90668 1.48248 1.15898 1.84668 1.20258 1.02214 0.97540 0.90929 1.19052 0.98387 1.02362 0.98341 1.20301 0.96080 0.98111 0.95451 1.20300 0.99358 1.04389 1.01847 1.20674 0.94659 0.98740 0.98520 1.21296 0.97966 1.01025 0.97559 1.17333 0.90695 0.88013 0.91293 1.19464 0.91567 1.39327 0.98218 0.90866 1.25859 0.99953 0.92670 0.95490 1.69816 1.22354 1.34725 1.15265 0.86426 0.80219 0.79039 0.81745 1.19525 1.20076 1.18653 1.20503 0.77308 0.86723 0.83540 1.90689 1.48617 1.17067 1.84755 1.48442 1.68511 1.10789 1.07645 1.22180 1.01611 0.81645 0.97611 1.22704 1.00336 0.99536 0.94295 1.22864 0.99890 0.94574 0.99936 1.22238 1.00183 0.96494 0.82899 0.90341 0.91737 0.91793 0.75805 0.88444 0.90411 0.89741 0.89696 0.89620 0.86503 0.91010 0.90704 0.90814 0.89669 0.90378 0.89697 0.90374 0.91389 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.47 37.16 0.35 -1.50 16 2 C 0.13 1.87 2.46 -69.08 -0.17 1.70 16 3 H 0.11 1.61 6.82 -51.93 -0.35 1.25 16 4 N -0.73 -11.90 5.05 -54.93 -0.28 -12.18 16 5 C 0.52 10.36 7.40 -10.99 -0.08 10.28 16 6 O -0.52 -12.25 15.70 5.55 0.09 -12.16 16 7 C -0.07 -1.41 5.18 -29.03 -0.15 -1.56 16 8 C -0.18 -4.39 4.43 -103.91 -0.46 -4.85 16 9 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 10 C -0.24 -5.64 10.05 -39.29 -0.39 -6.04 16 11 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 12 C -0.16 -4.30 8.68 -38.88 -0.34 -4.64 16 13 C 0.13 3.50 5.56 -106.82 -0.59 2.90 16 14 C -0.46 -12.21 8.14 -37.74 -0.31 -12.52 16 15 H 0.07 1.93 6.67 -52.49 -0.35 1.58 16 16 C 0.08 1.98 5.17 -17.34 -0.09 1.89 16 17 N -0.80 -20.83 10.94 55.55 0.61 -20.22 16 18 Si 0.90 19.26 29.59 -169.99 -5.03 14.23 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 22 C 0.53 7.41 7.07 -10.99 -0.08 7.33 16 23 O -0.54 -8.93 16.18 5.55 0.09 -8.84 16 24 N -0.62 -6.76 3.33 -170.52 -0.57 -7.33 16 25 C 0.09 0.76 6.18 -3.06 -0.02 0.74 16 26 C -0.13 -0.75 6.98 -24.68 -0.17 -0.92 16 27 C -0.13 -0.84 7.10 -24.37 -0.17 -1.01 16 28 C 0.10 0.92 6.93 -2.53 -0.02 0.91 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.61 7.19 -51.93 -0.37 0.23 16 32 H 0.41 6.13 7.75 -40.82 -0.32 5.82 16 33 H 0.10 1.98 7.08 -51.93 -0.37 1.61 16 34 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 35 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 36 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.12 3.24 6.20 -52.48 -0.33 2.92 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.07 0.67 7.93 -51.93 -0.41 0.26 16 41 H 0.07 0.53 7.20 -51.93 -0.37 0.16 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.81 7.99 -51.93 -0.41 0.39 16 LS Contribution 384.95 15.07 5.80 5.80 Total: -1.00 -32.71 384.95 -9.83 -42.54 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.07 Total: 10.79 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.47 Total: -12.62 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.24 Total: -39.73 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.18 Total: -21.00 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.71 -9.83 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798556601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.501 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds