Wall clock time and date at job start Tue Mar 31 2020 16:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47157 * 2 1 4 4 N 1.46500 * 109.46976 * 240.00138 * 2 1 3 5 5 C 1.34774 * 120.00127 * 85.00117 * 4 2 1 6 6 O 1.21288 * 119.99991 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00305 * 179.97438 * 5 4 2 8 8 C 1.50701 * 109.47266 * 179.97438 * 7 5 4 9 9 C 1.37633 * 120.12717 * 265.00187 * 8 7 5 10 10 C 1.38613 * 120.24357 * 179.97438 * 9 8 7 11 11 C 1.38650 * 120.50412 * 0.02562 * 10 9 8 12 12 C 1.37599 * 120.24902 * 0.02562 * 11 10 9 13 13 C 1.40703 * 120.12484 * 84.72800 * 8 7 5 14 14 C 1.41401 * 120.24080 * 359.97438 * 13 8 7 15 15 H 1.07995 * 120.00334 * 333.80533 * 14 13 8 16 16 C 1.39948 * 119.99329 * 153.80637 * 14 13 8 17 17 N 1.30819 * 120.00316 * 344.14884 * 16 14 13 18 18 Si 1.86801 * 119.99492 * 164.14224 * 16 14 13 19 19 H 1.48504 * 109.47087 * 90.00253 * 18 16 14 20 20 H 1.48499 * 109.47192 * 210.00023 * 18 16 14 21 21 H 1.48497 * 109.47331 * 330.00186 * 18 16 14 22 22 C 1.50698 * 109.47130 * 119.99774 * 2 1 3 23 23 O 1.21288 * 119.99929 * 98.38432 * 22 2 1 24 24 N 1.34775 * 120.00570 * 278.38255 * 22 2 1 25 25 C 1.47027 * 125.64342 * 355.35095 * 24 22 2 26 26 C 1.54328 * 107.39813 * 180.94488 * 25 24 22 27 27 C 1.55543 * 102.75999 * 22.24270 * 26 25 24 28 28 C 1.47416 * 125.65300 * 175.30781 * 24 22 2 29 29 H 1.08999 * 109.47285 * 52.40646 * 1 2 3 30 30 H 1.08997 * 109.47346 * 172.41018 * 1 2 3 31 31 H 1.09004 * 109.47275 * 292.40738 * 1 2 3 32 32 H 0.97001 * 119.99538 * 264.99913 * 4 2 1 33 33 H 1.08995 * 109.47072 * 299.99988 * 7 5 4 34 34 H 1.08997 * 109.46947 * 59.99607 * 7 5 4 35 35 H 1.08003 * 119.87620 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.74551 * 179.97438 * 10 9 8 37 37 H 1.08009 * 119.87762 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.12307 * 179.97438 * 12 11 10 39 39 H 0.97002 * 120.00177 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.88159 * 300.44039 * 25 24 22 41 41 H 1.09001 * 109.88343 * 61.45350 * 25 24 22 42 42 H 1.09004 * 110.71543 * 140.63531 * 26 25 24 43 43 H 1.08996 * 110.71872 * 263.90660 * 26 25 24 44 44 H 1.09001 * 110.96432 * 206.39655 * 27 26 25 45 45 H 1.08993 * 111.03042 * 82.55638 * 27 26 25 46 46 H 1.08999 * 110.36859 * 274.75150 * 28 24 22 47 47 H 1.09004 * 110.36723 * 36.96173 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8582 1.1585 -2.4117 7 6 2.6499 -0.7284 -3.5875 8 6 2.6999 0.2398 -4.7413 9 6 1.6447 0.3209 -5.6212 10 6 1.6879 1.2110 -6.6829 11 6 2.7919 2.0282 -6.8718 12 6 3.8587 1.9633 -6.0051 13 6 3.8230 1.0683 -4.9197 14 6 4.9102 0.9980 -4.0183 15 1 4.7498 0.6647 -3.0037 16 6 6.1941 1.3606 -4.4411 17 7 6.4574 1.4636 -5.7184 18 14 7.5317 1.6976 -3.1815 19 1 8.2567 0.4371 -2.8800 20 1 8.4841 2.6982 -3.7264 21 1 6.9177 2.2253 -1.9366 22 6 2.0323 -0.7103 1.2305 23 8 2.3789 -1.8706 1.1619 24 7 2.0966 -0.0564 2.4072 25 6 1.8021 1.3694 2.6122 26 6 2.0308 1.6775 4.1071 27 6 2.9901 0.5361 4.5502 28 6 2.4728 -0.6524 3.7020 29 1 -0.3634 0.6269 -0.8143 30 1 -0.3634 -1.0186 -0.1357 31 1 -0.3634 0.3917 0.9501 32 1 2.2490 -1.6318 -1.1526 33 1 3.6492 -1.1202 -3.3980 34 1 1.9777 -1.5507 -3.8325 35 1 0.7798 -0.3112 -5.4839 36 1 0.8556 1.2677 -7.3688 37 1 2.8151 2.7178 -7.7027 38 1 4.7178 2.6005 -6.1543 39 1 7.3474 1.7145 -6.0114 40 1 2.4700 1.9773 2.0020 41 1 0.7657 1.5760 2.3455 42 1 2.5036 2.6517 4.2320 43 1 1.0920 1.6297 4.6587 44 1 2.8857 0.3305 5.6156 45 1 4.0237 0.7744 4.2995 46 1 1.6038 -1.1076 4.1769 47 1 3.2604 -1.3933 3.5640 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798556601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:14 Heat of formation + Delta-G solvation = -77.922923 kcal Electronic energy + Delta-G solvation = -28323.747709 eV Core-core repulsion = 24469.796946 eV Total energy + Delta-G solvation = -3853.950763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.62021 -40.54635 -39.16135 -38.43514 -35.98669 -35.50073 -33.64959 -32.92978 -31.48150 -31.26520 -29.92311 -28.42338 -26.89910 -26.04172 -23.93521 -22.81025 -22.27640 -21.87386 -21.08448 -20.41260 -19.09531 -18.68218 -17.86020 -17.37145 -17.31792 -17.00066 -16.42945 -16.15061 -15.89270 -15.61852 -15.38303 -15.08166 -14.65544 -14.49797 -14.39125 -14.32309 -13.92624 -13.82231 -13.53765 -13.38104 -13.30759 -13.24893 -12.90878 -12.81200 -12.75705 -12.58689 -12.49947 -12.19944 -12.16582 -12.13643 -11.61672 -11.32085 -11.22579 -11.08018 -11.03456 -10.82400 -10.18063 -9.79379 -9.21425 -9.15861 -8.59768 -6.29810 0.98561 1.12782 1.31658 1.33002 1.44281 1.51568 1.65844 1.81153 2.18356 2.37805 2.78327 3.22940 3.62740 3.72959 3.78732 3.94236 3.97871 4.07357 4.16540 4.26656 4.40111 4.42786 4.44347 4.56150 4.61362 4.63923 4.71323 4.73934 4.80815 4.82241 4.91426 4.96456 5.05702 5.08510 5.10879 5.19638 5.20333 5.32930 5.38054 5.41397 5.55473 5.77739 6.04478 6.17128 6.22534 6.27814 6.42867 6.54987 6.74581 6.87487 6.99459 7.11484 7.33931 8.36515 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.003552 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.329157 B = 7881.333626 C = 9368.365123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.128 3.872 3 H 0.096 0.904 4 N -0.718 5.718 5 C 0.525 3.475 6 O -0.563 6.563 7 C -0.070 4.070 8 C -0.186 4.186 9 C -0.090 4.090 10 C -0.240 4.240 11 C -0.117 4.117 12 C -0.192 4.192 13 C 0.097 3.903 14 C -0.484 4.484 15 H 0.067 0.933 16 C 0.038 3.962 17 N -0.826 5.826 18 Si 0.968 3.032 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.268 1.268 22 C 0.529 3.471 23 O -0.570 6.570 24 N -0.616 5.616 25 C 0.081 3.919 26 C -0.121 4.121 27 C -0.127 4.127 28 C 0.096 3.904 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.413 0.587 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.286 0.714 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 -1.885 20.265 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.020 3.980 3 H 0.113 0.887 4 N -0.374 5.374 5 C 0.313 3.687 6 O -0.440 6.440 7 C -0.110 4.110 8 C -0.188 4.188 9 C -0.109 4.109 10 C -0.259 4.259 11 C -0.135 4.135 12 C -0.212 4.212 13 C 0.094 3.906 14 C -0.513 4.513 15 H 0.085 0.915 16 C -0.177 4.177 17 N -0.452 5.452 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.193 1.193 22 C 0.317 3.683 23 O -0.450 6.450 24 N -0.349 5.349 25 C -0.041 4.041 26 C -0.159 4.159 27 C -0.165 4.165 28 C -0.026 4.026 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.250 0.750 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.129 0.871 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.141 -1.637 19.959 21.618 hybrid contribution 1.041 -0.133 -0.045 1.051 sum -7.100 -1.769 19.914 21.216 Atomic orbital electron populations 1.22005 0.90946 1.03470 1.03932 1.20751 0.97113 0.97182 0.82999 0.88658 1.45863 1.68477 1.14833 1.08225 1.21090 0.75949 0.86960 0.84671 1.90649 1.50480 1.17485 1.85402 1.20272 1.02976 0.97617 0.90102 1.19490 0.97715 1.02092 0.99478 1.20736 0.96774 0.98397 0.94944 1.20725 0.99620 1.03403 1.02181 1.20958 0.94463 0.99390 0.98678 1.21305 0.98585 1.02026 0.99244 1.17711 0.92075 0.88967 0.91811 1.19586 0.92590 1.41148 0.98023 0.91522 1.26610 1.01742 0.92020 0.97281 1.69870 1.23263 1.35280 1.16794 0.85427 0.77481 0.79369 0.78817 1.18388 1.18824 1.19272 1.20359 0.77398 0.86314 0.84260 1.90668 1.50510 1.18403 1.85401 1.48552 1.66921 1.11963 1.07462 1.22454 1.02182 0.79797 0.99631 1.22730 1.01222 0.99790 0.92173 1.22864 0.99407 0.93396 1.00830 1.22466 1.00387 0.97368 0.82337 0.91699 0.91308 0.89007 0.75002 0.88904 0.86905 0.86474 0.86551 0.87568 0.88428 0.90346 0.91788 0.89434 0.88407 0.88452 0.87147 0.91209 0.89929 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.47 71.98 0.68 -2.60 16 2 C 0.13 3.60 2.46 44.24 0.11 3.71 16 3 H 0.10 2.92 6.82 -2.39 -0.02 2.90 16 4 N -0.72 -23.29 5.05 -446.10 -2.25 -25.54 16 5 C 0.53 21.01 7.40 87.66 0.65 21.65 16 6 O -0.56 -26.91 15.70 -3.05 -0.05 -26.96 16 7 C -0.07 -2.83 5.18 29.10 0.15 -2.68 16 8 C -0.19 -9.13 4.43 -19.40 -0.09 -9.21 16 9 C -0.09 -4.11 9.66 22.22 0.21 -3.90 16 10 C -0.24 -10.98 10.05 22.46 0.23 -10.76 16 11 C -0.12 -5.78 10.02 22.22 0.22 -5.55 16 12 C -0.19 -10.74 8.68 22.73 0.20 -10.54 16 13 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 14 C -0.48 -26.83 8.14 23.46 0.19 -26.64 16 15 H 0.07 3.65 6.67 -2.91 -0.02 3.63 16 16 C 0.04 1.98 5.17 85.26 0.44 2.42 16 17 N -0.83 -44.55 10.94 21.83 0.24 -44.31 16 18 Si 0.97 40.27 29.59 68.60 2.03 42.30 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 C 0.53 14.50 7.07 87.66 0.62 15.12 16 23 O -0.57 -19.00 16.18 -3.05 -0.05 -19.05 16 24 N -0.62 -12.75 3.33 -811.79 -2.70 -15.45 16 25 C 0.08 1.20 6.18 86.73 0.54 1.73 16 26 C -0.12 -1.02 6.98 31.92 0.22 -0.80 16 27 C -0.13 -1.26 7.10 32.12 0.23 -1.03 16 28 C 0.10 1.56 6.93 86.86 0.60 2.16 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.54 7.19 -2.38 -0.02 1.52 16 32 H 0.41 12.34 7.75 -92.71 -0.72 11.62 16 33 H 0.09 3.82 7.08 -2.39 -0.02 3.80 16 34 H 0.11 3.66 8.05 -2.39 -0.02 3.64 16 35 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.10 5.70 6.20 -2.91 -0.02 5.68 16 39 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 40 H 0.06 1.10 7.93 -2.39 -0.02 1.08 16 41 H 0.09 1.05 7.20 -2.39 -0.02 1.04 16 42 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.06 1.23 7.99 -2.38 -0.02 1.21 16 Total: -1.00 -73.41 384.95 2.57 -70.84 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.26 Total: 39.82 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 5.09 Total: -21.65 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -4.71 Total: -85.30 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.10 Total: -46.01 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -73.41 2.57 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798556601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.086 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds