Wall clock time and date at job start Tue Mar 31 2020 16:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47180 * 2 1 4 4 O 1.42900 * 109.47072 * 120.00280 * 2 1 3 5 5 C 1.42901 * 113.99784 * 269.99364 * 4 2 1 6 6 C 1.54236 * 108.89820 * 272.88670 * 5 4 2 7 7 C 1.50475 * 108.52636 * 159.26491 * 6 5 4 8 8 C 1.54063 * 112.50071 * 94.14698 * 7 6 5 9 9 C 1.54067 * 112.81885 * 318.29051 * 8 7 6 10 10 C 1.50479 * 112.49280 * 318.28190 * 9 8 7 11 11 C 1.45537 * 108.89231 * 150.00218 * 5 4 2 12 12 C 1.50700 * 109.46821 * 240.00115 * 2 1 3 13 13 O 1.20826 * 120.00162 * 245.27439 * 12 2 1 14 14 O 1.34234 * 120.00068 * 64.99865 * 12 2 1 15 15 C 1.45196 * 116.99938 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47070 * 180.02562 * 15 14 12 17 17 C 1.53007 * 109.47067 * 179.97438 * 16 15 14 18 18 S 1.81003 * 109.46913 * 179.97438 * 17 16 15 19 19 C 1.76204 * 99.99816 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00093 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99862 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99663 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99900 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46757 * 60.00269 * 23 21 19 25 25 H 1.48493 * 109.47106 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47146 * 300.00110 * 23 21 19 27 27 H 1.08996 * 109.46628 * 299.99848 * 1 2 3 28 28 H 1.09001 * 109.47202 * 60.00001 * 1 2 3 29 29 H 1.08995 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.09002 * 108.87111 * 31.40197 * 5 4 2 31 31 H 1.09001 * 109.62932 * 278.97706 * 6 5 4 32 32 H 1.09007 * 109.63058 * 39.55602 * 6 5 4 33 33 H 1.09002 * 108.87294 * 333.37087 * 7 6 5 34 34 H 1.09000 * 108.87922 * 214.93099 * 7 6 5 35 35 H 1.08996 * 108.81644 * 197.42426 * 8 7 6 36 36 H 1.09008 * 108.72646 * 79.08798 * 8 7 6 37 37 H 1.09001 * 108.88063 * 197.50465 * 9 8 7 38 38 H 1.09001 * 108.79801 * 79.00407 * 9 8 7 39 39 H 1.09003 * 109.62634 * 334.44205 * 10 9 8 40 40 H 1.08999 * 109.62259 * 213.86405 * 10 9 8 41 41 H 1.09001 * 108.90059 * 303.44277 * 11 5 4 42 42 H 1.08997 * 108.89814 * 62.03496 * 11 5 4 43 43 H 1.09012 * 109.47257 * 300.00032 * 15 14 12 44 44 H 1.08996 * 109.47465 * 60.00089 * 15 14 12 45 45 H 1.08999 * 109.47084 * 299.99805 * 16 15 14 46 46 H 1.08998 * 109.47592 * 59.99703 * 16 15 14 47 47 H 1.08999 * 109.47130 * 299.99925 * 17 16 15 48 48 H 1.08996 * 109.47345 * 59.99936 * 17 16 15 49 49 H 0.97004 * 119.99611 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 3.6197 0.7826 2.2275 7 6 3.6530 2.0271 3.0727 8 6 4.1457 1.7529 4.5065 9 6 3.5624 0.4568 5.1011 10 6 2.1022 0.2831 4.7817 11 6 1.9782 -0.5830 3.5115 12 6 2.0323 -0.7104 -1.2305 13 8 2.6463 -1.7454 -1.1223 14 8 1.7928 -0.1962 -2.4471 15 6 2.3058 -0.9344 -3.5874 16 6 1.9380 -0.1996 -4.8779 17 6 2.4792 -0.9771 -6.0795 18 16 2.0434 -0.1081 -7.6063 19 6 2.7678 -1.1914 -8.7923 20 1 3.2859 -2.0809 -8.4656 21 6 2.6725 -0.9015 -10.1463 22 7 2.0406 0.1824 -10.5444 23 14 3.4411 -2.0496 -11.4036 24 1 2.8302 -3.3976 -11.2814 25 1 3.2007 -1.5197 -12.7698 26 1 4.9027 -2.1444 -11.1590 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.4733 0.9939 2.2497 31 1 4.3407 0.0604 2.6105 32 1 3.8627 1.0346 1.1951 33 1 2.6489 2.4486 3.1195 34 1 4.3170 2.7538 2.6046 35 1 3.8606 2.5909 5.1425 36 1 5.2330 1.6758 4.4942 37 1 3.6865 0.4785 6.1839 38 1 4.1147 -0.3931 4.7003 39 1 1.6474 1.2580 4.6061 40 1 1.6021 -0.2130 5.6135 41 1 0.9795 -1.0185 3.4775 42 1 2.7121 -1.3873 3.5614 43 1 3.3904 -1.0132 -3.5110 44 1 1.8690 -1.9329 -3.6003 45 1 0.8536 -0.1204 -4.9545 46 1 2.3751 0.7988 -4.8649 47 1 3.5636 -1.0559 -6.0027 48 1 2.0424 -1.9756 -6.0928 49 1 1.9743 0.3852 -11.4907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805495160.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:27 Heat of formation + Delta-G solvation = -169.403093 kcal Electronic energy + Delta-G solvation = -25644.369349 eV Core-core repulsion = 21889.602908 eV Total energy + Delta-G solvation = -3754.766441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.76792 -39.85594 -37.51255 -36.43889 -33.61067 -32.82792 -32.46672 -32.42103 -30.77644 -26.85381 -25.68321 -25.42262 -24.86070 -24.09407 -21.37806 -21.20952 -20.91349 -19.72450 -18.00611 -17.54567 -17.24775 -16.91095 -16.57982 -15.93177 -15.43305 -15.10097 -14.82221 -14.77809 -14.46598 -14.22042 -13.83551 -13.55063 -13.45018 -13.35858 -12.92639 -12.76443 -12.67479 -12.57661 -12.48881 -12.12333 -11.91680 -11.67202 -11.53564 -11.34214 -11.13364 -11.03216 -10.98074 -10.94084 -10.89780 -10.80752 -10.75445 -10.68517 -10.35282 -10.29287 -9.92810 -9.63020 -9.07306 -8.36991 -6.57115 -6.25107 -3.96307 2.10132 2.18528 3.19630 3.22907 3.27171 3.38732 3.57790 4.13099 4.19745 4.30345 4.42251 4.44719 4.56252 4.60494 4.67525 4.68926 4.77348 4.85862 4.88207 5.01856 5.09814 5.12361 5.18165 5.21453 5.27816 5.33210 5.38474 5.41296 5.45404 5.48302 5.59851 5.70572 5.71537 5.73559 5.73949 5.76539 5.76927 5.83434 5.87448 5.91045 6.01129 6.15166 6.42279 6.44031 6.66396 6.73615 7.58492 7.71474 8.34271 9.21196 10.82975 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.001624 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.336298 B =17242.505074 C =17377.927768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.098 0.902 4 O -0.357 6.357 5 C 0.096 3.904 6 C -0.142 4.142 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.123 4.123 10 C -0.110 4.110 11 C -0.123 4.123 12 C 0.458 3.542 13 O -0.489 6.489 14 O -0.353 6.353 15 C 0.073 3.927 16 C -0.097 4.097 17 C -0.115 4.115 18 S -0.123 6.123 19 C -0.520 4.520 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.869 5.869 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 3.958 32.228 32.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.040 3.960 3 H 0.116 0.884 4 O -0.276 6.276 5 C 0.039 3.961 6 C -0.180 4.180 7 C -0.157 4.157 8 C -0.155 4.155 9 C -0.161 4.161 10 C -0.148 4.148 11 C -0.160 4.160 12 C 0.299 3.701 13 O -0.375 6.375 14 O -0.271 6.271 15 C -0.002 4.002 16 C -0.135 4.135 17 C -0.264 4.264 18 S 0.105 5.895 19 C -0.668 4.668 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.505 5.505 23 Si 0.746 3.254 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.391 4.510 31.897 32.244 hybrid contribution 1.287 -1.755 -0.773 2.310 sum -0.104 2.755 31.123 31.245 Atomic orbital electron populations 1.22235 0.92433 1.04098 1.03922 1.21384 0.95460 0.95997 0.83187 0.88400 1.88094 1.86340 1.34501 1.18667 1.21162 0.96078 0.92745 0.86091 1.21909 0.97576 0.97994 1.00546 1.21286 1.01772 0.97433 0.95163 1.21924 1.00392 0.97557 0.95661 1.21395 0.96023 0.98249 1.00411 1.21234 0.96873 1.00062 0.96582 1.20533 1.03383 0.99270 0.92856 1.23330 0.77455 0.84245 0.85062 1.90685 1.36776 1.22930 1.87083 1.86445 1.72429 1.53332 1.14857 1.23301 0.99234 0.95357 0.82270 1.21285 1.02758 0.99756 0.89749 1.23187 1.02616 1.02049 0.98506 1.84634 1.74547 1.35399 0.94911 1.22663 1.40998 1.10724 0.92391 0.90879 1.25013 0.95131 0.95808 0.97750 1.70008 1.39847 1.24294 1.16337 0.86205 0.79573 0.80301 0.79355 1.19903 1.20781 1.19907 0.90895 0.89753 0.91059 0.92125 0.90585 0.91403 0.92013 0.91801 0.92201 0.92176 0.92174 0.91790 0.91434 0.91238 0.91153 0.90835 0.91118 0.91067 0.90298 0.90333 0.91719 0.91704 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 9.49 37.16 0.35 -0.99 16 2 C 0.10 0.99 2.87 -27.88 -0.08 0.91 16 3 H 0.10 0.76 7.46 -51.93 -0.39 0.38 16 4 O -0.36 -3.88 9.08 -55.13 -0.50 -4.38 16 5 C 0.10 0.73 1.92 -29.60 -0.06 0.68 16 6 C -0.14 -1.05 5.16 -27.35 -0.14 -1.19 16 7 C -0.12 -0.68 5.31 -27.44 -0.15 -0.82 16 8 C -0.12 -0.60 5.85 -25.62 -0.15 -0.75 16 9 C -0.12 -0.63 5.32 -27.43 -0.15 -0.78 16 10 C -0.11 -0.55 5.61 -27.34 -0.15 -0.70 16 11 C -0.12 -0.83 4.82 -29.60 -0.14 -0.97 16 12 C 0.46 6.27 7.29 36.01 0.26 6.54 16 13 O -0.49 -8.35 16.26 -25.46 -0.41 -8.76 16 14 O -0.35 -4.89 10.21 -39.27 -0.40 -5.29 16 15 C 0.07 1.08 5.47 37.16 0.20 1.28 16 16 C -0.10 -1.58 5.60 -26.73 -0.15 -1.73 16 17 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 18 S -0.12 -3.19 21.44 -107.50 -2.30 -5.49 16 19 C -0.52 -14.86 9.50 30.94 0.29 -14.56 16 20 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 21 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 22 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 23 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H 0.07 0.43 7.90 -51.93 -0.41 0.02 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.37 6.86 -51.93 -0.36 0.02 16 31 H 0.08 0.61 6.97 -51.93 -0.36 0.25 16 32 H 0.07 0.56 7.67 -51.92 -0.40 0.16 16 33 H 0.06 0.31 6.63 -51.93 -0.34 -0.03 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 0.37 6.62 -51.93 -0.34 0.03 16 39 H 0.07 0.31 6.98 -51.93 -0.36 -0.05 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.57 7.46 -51.93 -0.39 0.18 16 43 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 44 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 48 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 49 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 401.09 15.07 6.04 6.04 Total: -1.00 -32.78 401.09 -10.62 -43.40 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -8.81 Total: -3.67 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 0.06 Total: -13.24 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.73 Total: -25.09 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -1.32 Total: -18.43 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.30 Total: -5.49 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.78 -10.62 -43.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805495160.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.004 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds