Wall clock time and date at job start Tue Mar 31 2020 16:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47180 * 2 1 4 4 O 1.42900 * 109.47072 * 120.00280 * 2 1 3 5 5 C 1.42901 * 113.99784 * 269.99364 * 4 2 1 6 6 C 1.54236 * 108.89820 * 272.88670 * 5 4 2 7 7 C 1.50475 * 108.52636 * 159.26491 * 6 5 4 8 8 C 1.54063 * 112.50071 * 94.14698 * 7 6 5 9 9 C 1.54067 * 112.81885 * 318.29051 * 8 7 6 10 10 C 1.50479 * 112.49280 * 318.28190 * 9 8 7 11 11 C 1.45537 * 108.89231 * 150.00218 * 5 4 2 12 12 C 1.50700 * 109.46821 * 240.00115 * 2 1 3 13 13 O 1.20826 * 120.00162 * 245.27439 * 12 2 1 14 14 O 1.34234 * 120.00068 * 64.99865 * 12 2 1 15 15 C 1.45196 * 116.99938 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47070 * 180.02562 * 15 14 12 17 17 C 1.53007 * 109.47067 * 179.97438 * 16 15 14 18 18 S 1.81003 * 109.46913 * 179.97438 * 17 16 15 19 19 C 1.76204 * 99.99816 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00093 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99862 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99663 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99900 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46757 * 60.00269 * 23 21 19 25 25 H 1.48493 * 109.47106 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47146 * 300.00110 * 23 21 19 27 27 H 1.08996 * 109.46628 * 299.99848 * 1 2 3 28 28 H 1.09001 * 109.47202 * 60.00001 * 1 2 3 29 29 H 1.08995 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.09002 * 108.87111 * 31.40197 * 5 4 2 31 31 H 1.09001 * 109.62932 * 278.97706 * 6 5 4 32 32 H 1.09007 * 109.63058 * 39.55602 * 6 5 4 33 33 H 1.09002 * 108.87294 * 333.37087 * 7 6 5 34 34 H 1.09000 * 108.87922 * 214.93099 * 7 6 5 35 35 H 1.08996 * 108.81644 * 197.42426 * 8 7 6 36 36 H 1.09008 * 108.72646 * 79.08798 * 8 7 6 37 37 H 1.09001 * 108.88063 * 197.50465 * 9 8 7 38 38 H 1.09001 * 108.79801 * 79.00407 * 9 8 7 39 39 H 1.09003 * 109.62634 * 334.44205 * 10 9 8 40 40 H 1.08999 * 109.62259 * 213.86405 * 10 9 8 41 41 H 1.09001 * 108.90059 * 303.44277 * 11 5 4 42 42 H 1.08997 * 108.89814 * 62.03496 * 11 5 4 43 43 H 1.09012 * 109.47257 * 300.00032 * 15 14 12 44 44 H 1.08996 * 109.47465 * 60.00089 * 15 14 12 45 45 H 1.08999 * 109.47084 * 299.99805 * 16 15 14 46 46 H 1.08998 * 109.47592 * 59.99703 * 16 15 14 47 47 H 1.08999 * 109.47130 * 299.99925 * 17 16 15 48 48 H 1.08996 * 109.47345 * 59.99936 * 17 16 15 49 49 H 0.97004 * 119.99611 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 3.6197 0.7826 2.2275 7 6 3.6530 2.0271 3.0727 8 6 4.1457 1.7529 4.5065 9 6 3.5624 0.4568 5.1011 10 6 2.1022 0.2831 4.7817 11 6 1.9782 -0.5830 3.5115 12 6 2.0323 -0.7104 -1.2305 13 8 2.6463 -1.7454 -1.1223 14 8 1.7928 -0.1962 -2.4471 15 6 2.3058 -0.9344 -3.5874 16 6 1.9380 -0.1996 -4.8779 17 6 2.4792 -0.9771 -6.0795 18 16 2.0434 -0.1081 -7.6063 19 6 2.7678 -1.1914 -8.7923 20 1 3.2859 -2.0809 -8.4656 21 6 2.6725 -0.9015 -10.1463 22 7 2.0406 0.1824 -10.5444 23 14 3.4411 -2.0496 -11.4036 24 1 2.8302 -3.3976 -11.2814 25 1 3.2007 -1.5197 -12.7698 26 1 4.9027 -2.1444 -11.1590 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.4733 0.9939 2.2497 31 1 4.3407 0.0604 2.6105 32 1 3.8627 1.0346 1.1951 33 1 2.6489 2.4486 3.1195 34 1 4.3170 2.7538 2.6046 35 1 3.8606 2.5909 5.1425 36 1 5.2330 1.6758 4.4942 37 1 3.6865 0.4785 6.1839 38 1 4.1147 -0.3931 4.7003 39 1 1.6474 1.2580 4.6061 40 1 1.6021 -0.2130 5.6135 41 1 0.9795 -1.0185 3.4775 42 1 2.7121 -1.3873 3.5614 43 1 3.3904 -1.0132 -3.5110 44 1 1.8690 -1.9329 -3.6003 45 1 0.8536 -0.1204 -4.9545 46 1 2.3751 0.7988 -4.8649 47 1 3.5636 -1.0559 -6.0027 48 1 2.0424 -1.9756 -6.0928 49 1 1.9743 0.3852 -11.4907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805495160.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:26 Heat of formation + Delta-G solvation = -185.559046 kcal Electronic energy + Delta-G solvation = -25645.069923 eV Core-core repulsion = 21889.602908 eV Total energy + Delta-G solvation = -3755.467015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77782 -40.56086 -38.28729 -37.48715 -34.97893 -34.59406 -33.42367 -32.98774 -31.41225 -28.29728 -27.54464 -26.18222 -25.45258 -24.81696 -22.77539 -21.96161 -21.70487 -20.15490 -19.58952 -18.89477 -18.19970 -17.97112 -17.57068 -16.90180 -16.63665 -16.30286 -16.06539 -15.82094 -15.53734 -15.06064 -14.91895 -14.54731 -14.28184 -14.07518 -13.95499 -13.86518 -13.78334 -13.38464 -13.24056 -13.12465 -13.06615 -12.94177 -12.66130 -12.59013 -12.41971 -12.39849 -12.23916 -12.08627 -11.66168 -11.55801 -11.47440 -11.43033 -11.30442 -11.22565 -11.14676 -11.14317 -10.59457 -10.37705 -8.68598 -8.38614 -6.15210 1.03159 1.13148 1.33981 1.40675 1.47936 1.74473 2.26275 2.71061 2.95892 3.26712 3.48083 3.62532 3.78656 3.82133 3.83437 3.95139 3.96404 4.00150 4.12520 4.16298 4.21431 4.29838 4.30164 4.37110 4.41797 4.46441 4.52782 4.64674 4.66590 4.74331 4.88997 4.94679 4.96524 4.99837 5.07883 5.10604 5.17223 5.22278 5.26313 5.29264 5.32586 5.34801 5.35791 5.39104 5.44980 5.57469 6.07789 6.16851 6.62995 7.03798 8.70415 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.001624 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.336298 B =17242.505074 C =17377.927768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 H 0.124 0.876 4 O -0.383 6.383 5 C 0.093 3.907 6 C -0.141 4.141 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.124 4.124 10 C -0.104 4.104 11 C -0.122 4.122 12 C 0.457 3.543 13 O -0.529 6.529 14 O -0.349 6.349 15 C 0.080 3.920 16 C -0.084 4.084 17 C -0.094 4.094 18 S -0.180 6.180 19 C -0.544 4.544 20 H 0.073 0.927 21 C 0.018 3.982 22 N -0.905 5.905 23 Si 0.993 3.007 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.265 1.265 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 4.393 33.550 33.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.141 0.859 4 O -0.303 6.303 5 C 0.037 3.963 6 C -0.179 4.179 7 C -0.154 4.154 8 C -0.155 4.155 9 C -0.161 4.161 10 C -0.141 4.141 11 C -0.159 4.159 12 C 0.300 3.700 13 O -0.417 6.417 14 O -0.266 6.266 15 C 0.004 3.996 16 C -0.122 4.122 17 C -0.242 4.242 18 S 0.048 5.952 19 C -0.692 4.692 20 H 0.091 0.909 21 C -0.188 4.188 22 N -0.541 5.541 23 Si 0.815 3.185 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.190 1.190 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.696 4.961 33.237 33.648 hybrid contribution 1.388 -1.890 -1.075 2.579 sum -0.308 3.070 32.162 32.309 Atomic orbital electron populations 1.22243 0.90566 1.03832 1.05528 1.21580 0.96632 0.96271 0.81280 0.85899 1.88080 1.86596 1.36101 1.19505 1.21367 0.96569 0.93075 0.85276 1.21885 0.97292 0.98535 1.00199 1.21267 1.02589 0.96435 0.95093 1.21926 1.00151 0.97903 0.95512 1.21396 0.96061 0.97781 1.00884 1.21215 0.96820 1.00268 0.95800 1.20545 1.02782 0.99131 0.93470 1.24242 0.76304 0.83839 0.85630 1.90667 1.38747 1.24845 1.87449 1.86442 1.72243 1.53014 1.14917 1.23061 0.99320 0.95102 0.82084 1.21099 1.02759 0.99416 0.88970 1.23082 1.02889 1.01772 0.96507 1.84584 1.75117 1.37169 0.98309 1.23038 1.41429 1.11147 0.93566 0.90854 1.26040 0.95392 0.97447 0.99882 1.70134 1.40963 1.26056 1.16993 0.85080 0.78802 0.78089 0.76543 1.19019 1.19847 1.19019 0.88262 0.89151 0.92267 0.89945 0.91972 0.92472 0.90764 0.91688 0.91088 0.92650 0.91321 0.93105 0.90346 0.90339 0.91127 0.92589 0.91024 0.90979 0.89936 0.89997 0.91433 0.91416 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.49 71.98 0.68 -1.56 16 2 C 0.10 1.86 2.87 29.85 0.09 1.95 16 3 H 0.12 1.62 7.46 -2.39 -0.02 1.60 16 4 O -0.38 -8.01 9.08 -129.96 -1.18 -9.19 16 5 C 0.09 1.29 1.92 28.73 0.06 1.34 16 6 C -0.14 -1.98 5.16 30.20 0.16 -1.82 16 7 C -0.12 -1.12 5.31 30.14 0.16 -0.96 16 8 C -0.12 -1.02 5.85 31.31 0.18 -0.84 16 9 C -0.12 -1.11 5.32 30.14 0.16 -0.95 16 10 C -0.10 -0.83 5.61 30.20 0.17 -0.66 16 11 C -0.12 -1.52 4.82 28.73 0.14 -1.38 16 12 C 0.46 12.20 7.29 71.24 0.52 12.72 16 13 O -0.53 -18.17 16.26 28.38 0.46 -17.71 16 14 O -0.35 -9.27 10.21 -51.46 -0.53 -9.79 16 15 C 0.08 2.27 5.47 71.98 0.39 2.66 16 16 C -0.08 -2.65 5.60 30.60 0.17 -2.48 16 17 C -0.09 -3.71 5.67 71.98 0.41 -3.30 16 18 S -0.18 -9.47 21.44 -56.49 -1.21 -10.68 16 19 C -0.54 -31.34 9.50 67.95 0.65 -30.69 16 20 H 0.07 4.07 7.80 -2.91 -0.02 4.04 16 21 C 0.02 1.00 5.49 84.86 0.47 1.47 16 22 N -0.91 -54.24 13.22 21.65 0.29 -53.95 16 23 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H 0.10 0.84 7.90 -2.39 -0.02 0.82 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.77 6.86 -2.39 -0.02 0.75 16 31 H 0.06 1.02 6.97 -2.39 -0.02 1.01 16 32 H 0.06 0.91 7.67 -2.38 -0.02 0.89 16 33 H 0.07 0.54 6.63 -2.39 -0.02 0.52 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.05 0.59 6.62 -2.39 -0.02 0.57 16 39 H 0.08 0.49 6.98 -2.39 -0.02 0.47 16 40 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.88 7.46 -2.39 -0.02 0.87 16 43 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 44 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 45 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.07 2.63 8.14 -2.40 -0.02 2.61 16 48 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 49 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -71.37 401.09 5.15 -66.22 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.90 Total: 13.74 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 4.39 Total: -24.50 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.29 Total: -53.95 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.24 Total: -36.69 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -9.47 SS G_CDS: -1.21 Total: -10.68 kcal Total: -71.37 5.15 -66.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805495160.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.340 kcal (2) G-P(sol) polarization free energy of solvation -71.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds