Wall clock time and date at job start Tue Mar 31 2020 16:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47556 * 2 1 4 4 C 1.50699 * 109.47435 * 240.00088 * 2 1 3 5 5 O 1.21287 * 120.00167 * 267.11137 * 4 2 1 6 6 N 1.34774 * 120.00242 * 87.10092 * 4 2 1 7 7 C 1.47429 * 125.64805 * 359.97438 * 6 4 2 8 8 C 1.54903 * 104.83489 * 155.90073 * 7 6 4 9 9 C 1.55157 * 101.57975 * 37.00993 * 8 7 6 10 10 O 1.42903 * 110.71894 * 82.86147 * 9 8 7 11 11 C 1.50700 * 110.71979 * 205.95496 * 9 8 7 12 12 H 1.08000 * 119.99858 * 116.15892 * 11 9 8 13 13 C 1.37877 * 120.00332 * 296.15974 * 11 9 8 14 14 N 1.31512 * 119.99700 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00133 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47503 * 59.99966 * 15 13 11 17 17 H 1.48507 * 109.46883 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47113 * 299.99579 * 15 13 11 19 19 C 1.47022 * 125.65298 * 180.02562 * 6 4 2 20 20 N 1.46899 * 109.47182 * 119.99992 * 2 1 3 21 21 C 1.47909 * 110.99892 * 179.51585 * 20 2 1 22 22 C 1.54600 * 102.63121 * 94.68412 * 21 20 2 23 23 C 1.51577 * 102.81626 * 25.59360 * 22 21 20 24 24 C 1.37921 * 131.55993 * 163.78092 * 23 22 21 25 25 C 1.38300 * 120.07547 * 180.28314 * 24 23 22 26 26 C 1.38307 * 119.88505 * 0.02562 * 25 24 23 27 27 C 1.37908 * 120.26177 * 359.84935 * 26 25 24 28 28 C 1.38959 * 107.95070 * 343.81312 * 23 22 21 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46659 * 299.99624 * 1 2 3 31 31 H 1.08997 * 109.46926 * 59.99499 * 1 2 3 32 32 H 1.09003 * 110.36502 * 37.06370 * 7 6 4 33 33 H 1.08997 * 110.36489 * 274.74356 * 7 6 4 34 34 H 1.08998 * 111.00878 * 278.93845 * 8 7 6 35 35 H 1.08999 * 111.03825 * 155.09706 * 8 7 6 36 36 H 0.96702 * 113.99854 * 61.45727 * 10 9 8 37 37 H 0.96999 * 120.00195 * 179.97438 * 14 13 11 38 38 H 1.08991 * 109.88071 * 61.60664 * 19 6 4 39 39 H 1.09000 * 109.88193 * 300.44597 * 19 6 4 40 40 H 1.09000 * 110.77525 * 212.96549 * 21 20 2 41 41 H 1.08999 * 110.78165 * 336.20637 * 21 20 2 42 42 H 1.08998 * 110.74812 * 143.93489 * 22 21 20 43 43 H 1.09005 * 110.73967 * 267.08694 * 22 21 20 44 44 H 1.08001 * 119.95971 * 0.30877 * 24 23 22 45 45 H 1.08004 * 120.05478 * 180.02562 * 25 24 23 46 46 H 1.07994 * 119.86411 * 179.86865 * 26 25 24 47 47 H 1.07998 * 119.89342 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2845 -1.8959 -1.1858 6 7 2.2014 -0.0284 -2.3805 7 6 1.9342 1.4084 -2.5747 8 6 2.8266 1.8195 -3.7723 9 6 2.7387 0.5593 -4.6732 10 8 1.5517 0.5882 -5.4685 11 6 3.9609 0.4423 -5.5470 12 1 4.6296 -0.3977 -5.4304 13 6 4.2255 1.4076 -6.4952 14 7 3.4110 2.4303 -6.6374 15 14 5.7401 1.2622 -7.5788 16 1 5.6705 0.0014 -8.3602 17 1 5.7965 2.4189 -8.5084 18 1 6.9576 1.2511 -6.7287 19 6 2.6818 -0.5942 -3.6497 20 7 2.0197 -0.6925 1.1994 21 6 3.4982 -0.7223 1.2277 22 6 3.8448 0.5138 2.0891 23 6 2.6043 0.6874 2.9427 24 6 2.3821 1.4068 4.0982 25 6 1.1339 1.3934 4.6938 26 6 0.1087 0.6567 4.1289 27 6 0.3252 -0.0623 2.9721 28 6 1.5795 -0.0514 2.3640 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2135 1.9700 -1.6832 33 1 0.8827 1.5700 -2.8120 34 1 3.8526 1.9995 -3.4514 35 1 2.4198 2.6931 -4.2817 36 1 1.5028 1.3399 -6.0748 37 1 3.5972 3.1097 -7.3043 38 1 1.9928 -1.3641 -3.9966 39 1 3.6767 -1.0182 -3.5135 40 1 3.8575 -1.6362 1.7008 41 1 3.9063 -0.6231 0.2219 42 1 4.7177 0.3180 2.7118 43 1 4.0095 1.3887 1.4601 44 1 3.1836 1.9816 4.5382 45 1 0.9602 1.9572 5.5984 46 1 -0.8652 0.6447 4.5954 47 1 -0.4797 -0.6351 2.5359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844013272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:03 Heat of formation + Delta-G solvation = -31.918113 kcal Electronic energy + Delta-G solvation = -29117.096095 eV Core-core repulsion = 25265.140250 eV Total energy + Delta-G solvation = -3851.955845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.24346 -39.41571 -37.53851 -36.50439 -34.38838 -33.50973 -32.23074 -31.01029 -29.63774 -29.36546 -28.51309 -28.16393 -25.51183 -23.86641 -23.19794 -22.30838 -21.37639 -21.04559 -19.71404 -18.64032 -17.43669 -16.94412 -16.55175 -16.14704 -15.76504 -15.35936 -15.28389 -14.98565 -14.60872 -14.27832 -14.15525 -13.79456 -13.49604 -13.09170 -13.02195 -12.95808 -12.81097 -12.43562 -12.20696 -12.09587 -11.88213 -11.70876 -11.62351 -11.50257 -11.37670 -11.37448 -11.22626 -10.95280 -10.91068 -10.67822 -10.53875 -10.16445 -9.74303 -9.47116 -9.17517 -8.93540 -8.69967 -8.27976 -8.06988 -7.97453 -6.33241 -4.40374 1.13857 1.22468 2.94784 3.18808 3.20480 3.24081 3.28650 3.59016 3.69813 4.23409 4.43751 4.58126 4.72030 4.83764 4.87679 4.94893 4.96543 5.03679 5.05092 5.26758 5.29292 5.41936 5.48110 5.54096 5.62136 5.68865 5.72909 5.77106 5.79787 5.84617 5.94265 5.97873 6.09102 6.16419 6.20525 6.29489 6.34549 6.40746 6.58852 6.62891 6.76714 6.83989 6.91922 7.16619 7.22922 7.28184 7.69038 7.97297 8.03685 8.57722 8.62522 9.26834 9.37085 10.74686 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.002913 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.941474 B = 9609.938988 C = 9850.380695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 H 0.066 0.934 4 C 0.525 3.475 5 O -0.533 6.533 6 N -0.607 5.607 7 C 0.094 3.906 8 C -0.136 4.136 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.535 4.535 12 H 0.064 0.936 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.903 3.097 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.124 3.876 20 N -0.472 5.472 21 C 0.055 3.945 22 C -0.113 4.113 23 C -0.137 4.137 24 C -0.090 4.090 25 C -0.135 4.135 26 C -0.107 4.107 27 C -0.111 4.111 28 C 0.098 3.902 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.384 0.616 37 H 0.269 0.731 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 2.415 18.654 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 H 0.084 0.916 4 C 0.312 3.688 5 O -0.410 6.410 6 N -0.341 5.341 7 C -0.029 4.029 8 C -0.175 4.175 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.573 4.573 12 H 0.082 0.918 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.731 3.269 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.002 3.998 20 N -0.189 5.189 21 C -0.071 4.071 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.109 4.109 25 C -0.153 4.153 26 C -0.126 4.126 27 C -0.131 4.131 28 C 0.001 3.999 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.234 0.766 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.371 0.805 18.849 19.365 hybrid contribution 1.270 1.377 -0.896 2.076 sum -3.101 2.182 17.952 18.348 Atomic orbital electron populations 1.21925 0.91756 1.03723 1.03018 1.21657 0.97798 0.95896 0.88124 0.91640 1.19812 0.78708 0.87101 0.83226 1.90688 1.51178 1.14900 1.84244 1.48670 1.64175 1.10856 1.10376 1.22542 1.00390 0.80508 0.99463 1.23320 0.98226 1.01581 0.94328 1.19439 0.84536 0.88171 0.87025 1.86127 1.42886 1.53345 1.57105 1.21475 1.08106 1.08885 1.18868 0.91807 1.24975 0.96940 0.94474 0.96565 1.69628 1.37466 1.11595 1.34947 0.86463 0.82556 0.77798 0.80106 1.19956 1.21094 1.20077 1.22072 0.98751 0.97390 0.81562 1.59877 1.10056 1.49554 0.99414 1.23139 0.85309 0.97804 1.00897 1.21755 0.96201 0.99628 0.97571 1.21051 0.96905 0.98310 0.97731 1.20390 0.97269 0.98765 0.94472 1.21031 0.92965 1.00806 1.00526 1.20929 0.99200 0.97082 0.95367 1.20621 0.95529 1.01026 0.95884 1.19539 0.94335 0.93486 0.92503 0.90931 0.90959 0.91101 0.92408 0.91777 0.91460 0.89425 0.76553 0.92097 0.92024 0.91011 0.88932 0.89566 0.89448 0.89977 0.86267 0.85898 0.85660 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.57 37.16 0.32 -1.58 16 2 C 0.07 1.11 1.84 -68.87 -0.13 0.98 16 3 H 0.07 0.93 6.62 -51.93 -0.34 0.59 16 4 C 0.52 9.76 5.59 -10.99 -0.06 9.70 16 5 O -0.53 -11.62 16.36 5.55 0.09 -11.53 16 6 N -0.61 -11.71 3.33 -170.53 -0.57 -12.28 16 7 C 0.09 1.64 6.67 -2.53 -0.02 1.62 16 8 C -0.14 -2.82 5.57 -24.59 -0.14 -2.96 16 9 C 0.25 5.84 0.85 -89.94 -0.08 5.77 16 10 O -0.59 -14.41 13.06 -35.23 -0.46 -14.87 16 11 C -0.54 -13.72 8.22 -34.44 -0.28 -14.00 16 12 H 0.06 1.64 7.56 -52.49 -0.40 1.25 16 13 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 14 N -0.90 -22.52 10.69 55.43 0.59 -21.93 16 15 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 C 0.12 2.74 6.22 -3.07 -0.02 2.72 16 20 N -0.47 -6.90 4.64 -162.81 -0.76 -7.65 16 21 C 0.06 0.75 6.38 -2.43 -0.02 0.74 16 22 C -0.11 -1.26 6.98 -26.61 -0.19 -1.45 16 23 C -0.14 -1.61 6.23 -104.04 -0.65 -2.26 16 24 C -0.09 -0.90 10.03 -39.67 -0.40 -1.30 16 25 C -0.13 -1.20 10.06 -39.53 -0.40 -1.60 16 26 C -0.11 -0.99 10.02 -39.68 -0.40 -1.38 16 27 C -0.11 -1.23 8.09 -39.27 -0.32 -1.55 16 28 C 0.10 1.26 5.20 -83.41 -0.43 0.82 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.81 5.47 -51.93 -0.28 0.52 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.86 6.79 -51.93 -0.35 0.51 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 35 H 0.09 1.89 7.64 -51.93 -0.40 1.49 16 36 H 0.38 9.45 7.28 45.56 0.33 9.78 16 37 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 39 H 0.07 1.62 7.66 -51.93 -0.40 1.22 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.30 6.48 -51.93 -0.34 0.97 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.13 1.30 7.29 -52.49 -0.38 0.91 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -28.65 370.94 -10.15 -38.80 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -6.34 Total: 12.92 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -3.29 Total: -3.99 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.73 Total: -41.86 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.37 Total: -26.40 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.65 -10.15 -38.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844013272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.886 kcal (2) G-P(sol) polarization free energy of solvation -28.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds