Wall clock time and date at job start Tue Mar 31 2020 16:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47556 * 2 1 4 4 C 1.50699 * 109.47435 * 240.00088 * 2 1 3 5 5 O 1.21287 * 120.00167 * 267.11137 * 4 2 1 6 6 N 1.34774 * 120.00242 * 87.10092 * 4 2 1 7 7 C 1.47429 * 125.64805 * 359.97438 * 6 4 2 8 8 C 1.54903 * 104.83489 * 155.90073 * 7 6 4 9 9 C 1.55157 * 101.57975 * 37.00993 * 8 7 6 10 10 O 1.42903 * 110.71894 * 82.86147 * 9 8 7 11 11 C 1.50700 * 110.71979 * 205.95496 * 9 8 7 12 12 H 1.08000 * 119.99858 * 116.15892 * 11 9 8 13 13 C 1.37877 * 120.00332 * 296.15974 * 11 9 8 14 14 N 1.31512 * 119.99700 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 120.00133 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47503 * 59.99966 * 15 13 11 17 17 H 1.48507 * 109.46883 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47113 * 299.99579 * 15 13 11 19 19 C 1.47022 * 125.65298 * 180.02562 * 6 4 2 20 20 N 1.46899 * 109.47182 * 119.99992 * 2 1 3 21 21 C 1.47909 * 110.99892 * 179.51585 * 20 2 1 22 22 C 1.54600 * 102.63121 * 94.68412 * 21 20 2 23 23 C 1.51577 * 102.81626 * 25.59360 * 22 21 20 24 24 C 1.37921 * 131.55993 * 163.78092 * 23 22 21 25 25 C 1.38300 * 120.07547 * 180.28314 * 24 23 22 26 26 C 1.38307 * 119.88505 * 0.02562 * 25 24 23 27 27 C 1.37908 * 120.26177 * 359.84935 * 26 25 24 28 28 C 1.38959 * 107.95070 * 343.81312 * 23 22 21 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46659 * 299.99624 * 1 2 3 31 31 H 1.08997 * 109.46926 * 59.99499 * 1 2 3 32 32 H 1.09003 * 110.36502 * 37.06370 * 7 6 4 33 33 H 1.08997 * 110.36489 * 274.74356 * 7 6 4 34 34 H 1.08998 * 111.00878 * 278.93845 * 8 7 6 35 35 H 1.08999 * 111.03825 * 155.09706 * 8 7 6 36 36 H 0.96702 * 113.99854 * 61.45727 * 10 9 8 37 37 H 0.96999 * 120.00195 * 179.97438 * 14 13 11 38 38 H 1.08991 * 109.88071 * 61.60664 * 19 6 4 39 39 H 1.09000 * 109.88193 * 300.44597 * 19 6 4 40 40 H 1.09000 * 110.77525 * 212.96549 * 21 20 2 41 41 H 1.08999 * 110.78165 * 336.20637 * 21 20 2 42 42 H 1.08998 * 110.74812 * 143.93489 * 22 21 20 43 43 H 1.09005 * 110.73967 * 267.08694 * 22 21 20 44 44 H 1.08001 * 119.95971 * 0.30877 * 24 23 22 45 45 H 1.08004 * 120.05478 * 180.02562 * 25 24 23 46 46 H 1.07994 * 119.86411 * 179.86865 * 26 25 24 47 47 H 1.07998 * 119.89342 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2845 -1.8959 -1.1858 6 7 2.2014 -0.0284 -2.3805 7 6 1.9342 1.4084 -2.5747 8 6 2.8266 1.8195 -3.7723 9 6 2.7387 0.5593 -4.6732 10 8 1.5517 0.5882 -5.4685 11 6 3.9609 0.4423 -5.5470 12 1 4.6296 -0.3977 -5.4304 13 6 4.2255 1.4076 -6.4952 14 7 3.4110 2.4303 -6.6374 15 14 5.7401 1.2622 -7.5788 16 1 5.6705 0.0014 -8.3602 17 1 5.7965 2.4189 -8.5084 18 1 6.9576 1.2511 -6.7287 19 6 2.6818 -0.5942 -3.6497 20 7 2.0197 -0.6925 1.1994 21 6 3.4982 -0.7223 1.2277 22 6 3.8448 0.5138 2.0891 23 6 2.6043 0.6874 2.9427 24 6 2.3821 1.4068 4.0982 25 6 1.1339 1.3934 4.6938 26 6 0.1087 0.6567 4.1289 27 6 0.3252 -0.0623 2.9721 28 6 1.5795 -0.0514 2.3640 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2135 1.9700 -1.6832 33 1 0.8827 1.5700 -2.8120 34 1 3.8526 1.9995 -3.4514 35 1 2.4198 2.6931 -4.2817 36 1 1.5028 1.3399 -6.0748 37 1 3.5972 3.1097 -7.3043 38 1 1.9928 -1.3641 -3.9966 39 1 3.6767 -1.0182 -3.5135 40 1 3.8575 -1.6362 1.7008 41 1 3.9063 -0.6231 0.2219 42 1 4.7177 0.3180 2.7118 43 1 4.0095 1.3887 1.4601 44 1 3.1836 1.9816 4.5382 45 1 0.9602 1.9572 5.5984 46 1 -0.8652 0.6447 4.5954 47 1 -0.4797 -0.6351 2.5359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844013272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:02 Heat of formation + Delta-G solvation = -50.024367 kcal Electronic energy + Delta-G solvation = -29117.881241 eV Core-core repulsion = 25265.140250 eV Total energy + Delta-G solvation = -3852.740991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.27034 -40.84145 -39.08530 -37.54811 -36.15038 -34.54500 -34.19398 -32.06222 -31.17004 -30.22169 -30.09432 -29.20120 -27.26283 -25.22875 -24.08990 -23.72278 -22.36637 -21.95401 -21.42220 -20.09169 -19.22421 -18.38696 -17.65892 -17.15668 -16.95148 -16.77284 -16.73702 -16.35432 -16.00064 -15.70929 -15.36803 -15.03902 -14.79467 -14.53582 -14.25517 -13.93612 -13.85017 -13.71036 -13.53482 -13.38424 -13.26300 -13.23126 -13.09065 -12.90912 -12.75849 -12.67404 -12.46329 -12.37158 -12.29300 -12.16599 -12.00566 -11.74218 -11.31523 -10.97188 -10.64571 -10.36197 -10.16964 -9.70137 -9.68749 -8.89153 -8.26297 -6.40039 0.34742 0.47078 1.41924 1.44006 1.49311 1.50750 1.83370 2.38327 2.58874 2.82551 2.99146 3.33111 3.62540 3.68203 3.81346 3.84288 3.91714 3.96608 3.99920 4.13437 4.22915 4.28702 4.34265 4.46703 4.51139 4.54147 4.60588 4.62291 4.67566 4.69878 4.70681 4.86824 4.90639 4.93080 5.06954 5.12379 5.14994 5.19990 5.39403 5.42905 5.49036 5.51567 5.62537 5.74499 5.79108 5.85953 6.06132 6.29147 6.51389 6.62924 7.07278 7.30162 7.41188 8.79931 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.002913 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.941474 B = 9609.938988 C = 9850.380695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 H 0.077 0.923 4 C 0.525 3.475 5 O -0.572 6.572 6 N -0.609 5.609 7 C 0.103 3.897 8 C -0.125 4.125 9 C 0.238 3.762 10 O -0.593 6.593 11 C -0.564 4.564 12 H 0.050 0.950 13 C 0.039 3.961 14 N -0.905 5.905 15 Si 0.958 3.042 16 H -0.279 1.279 17 H -0.277 1.277 18 H -0.273 1.273 19 C 0.131 3.869 20 N -0.489 5.489 21 C 0.051 3.949 22 C -0.104 4.104 23 C -0.149 4.149 24 C -0.095 4.095 25 C -0.129 4.129 26 C -0.105 4.105 27 C -0.120 4.120 28 C 0.069 3.931 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.381 0.619 37 H 0.273 0.727 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.139 0.861 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 4.362 21.039 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 H 0.095 0.905 4 C 0.313 3.687 5 O -0.451 6.451 6 N -0.342 5.342 7 C -0.019 4.019 8 C -0.164 4.164 9 C 0.198 3.802 10 O -0.402 6.402 11 C -0.602 4.602 12 H 0.069 0.931 13 C -0.163 4.163 14 N -0.544 5.544 15 Si 0.783 3.217 16 H -0.204 1.204 17 H -0.202 1.202 18 H -0.198 1.198 19 C 0.008 3.992 20 N -0.207 5.207 21 C -0.075 4.075 22 C -0.142 4.142 23 C -0.152 4.152 24 C -0.114 4.114 25 C -0.147 4.147 26 C -0.123 4.123 27 C -0.140 4.140 28 C -0.026 4.026 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.157 0.843 45 H 0.170 0.830 46 H 0.170 0.830 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.938 2.776 21.257 21.998 hybrid contribution 1.420 0.737 -1.583 2.251 sum -3.518 3.513 19.674 20.292 Atomic orbital electron populations 1.21923 0.90223 1.03373 1.04318 1.21583 0.98783 0.95572 0.86489 0.90544 1.20581 0.77478 0.86787 0.83816 1.90659 1.52716 1.16833 1.84865 1.48705 1.64233 1.11585 1.09673 1.22559 1.00291 0.79485 0.99539 1.23093 0.98448 0.99894 0.94976 1.19556 0.83522 0.89932 0.87229 1.86113 1.43369 1.53396 1.57341 1.21687 1.09077 1.09052 1.20387 0.93126 1.25556 0.99190 0.94188 0.97321 1.69679 1.38078 1.11595 1.35010 0.85619 0.79810 0.77620 0.78607 1.20449 1.20171 1.19835 1.21781 0.97678 0.96737 0.83027 1.59883 1.10383 1.50475 0.99955 1.23082 0.85310 0.99071 1.00066 1.21675 0.96947 0.98256 0.97362 1.21176 0.96501 0.98931 0.98547 1.20705 0.98474 0.98391 0.93786 1.21444 0.92248 0.99996 1.01001 1.21283 1.00609 0.95990 0.94460 1.20819 0.95015 1.01486 0.96672 1.19677 0.95603 0.95014 0.92335 0.92133 0.88742 0.90623 0.88917 0.90638 0.92306 0.90101 0.76828 0.91792 0.93932 0.92314 0.89362 0.91852 0.87767 0.89772 0.84275 0.82966 0.82950 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.57 71.98 0.62 -2.85 16 2 C 0.08 2.46 1.84 44.17 0.08 2.54 16 3 H 0.08 2.03 6.62 -2.39 -0.02 2.02 16 4 C 0.52 19.79 5.59 87.66 0.49 20.28 16 5 O -0.57 -25.88 16.36 -3.05 -0.05 -25.93 16 6 N -0.61 -23.71 3.33 -811.82 -2.70 -26.41 16 7 C 0.10 3.49 6.67 86.85 0.58 4.07 16 8 C -0.13 -5.20 5.57 31.98 0.18 -5.02 16 9 C 0.24 11.43 0.85 -10.35 -0.01 11.42 16 10 O -0.59 -29.75 13.06 -148.98 -1.95 -31.69 16 11 C -0.56 -29.63 8.22 25.60 0.21 -29.42 16 12 H 0.05 2.71 7.56 -2.91 -0.02 2.69 16 13 C 0.04 1.98 5.29 84.65 0.45 2.43 16 14 N -0.90 -45.31 10.69 21.45 0.23 -45.08 16 15 Si 0.96 40.97 29.54 68.60 2.03 43.00 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 C 0.13 6.02 6.22 86.73 0.54 6.56 16 20 N -0.49 -14.15 4.64 -669.00 -3.10 -17.25 16 21 C 0.05 1.42 6.38 86.65 0.55 1.97 16 22 C -0.10 -2.20 6.98 30.67 0.21 -1.99 16 23 C -0.15 -3.19 6.23 -19.49 -0.12 -3.31 16 24 C -0.10 -1.58 10.03 22.21 0.22 -1.35 16 25 C -0.13 -1.77 10.06 22.30 0.22 -1.55 16 26 C -0.11 -1.56 10.02 22.21 0.22 -1.33 16 27 C -0.12 -2.40 8.09 22.47 0.18 -2.22 16 28 C 0.07 1.68 5.20 38.28 0.20 1.88 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.90 5.47 -2.39 -0.01 1.89 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 2.52 6.79 -2.39 -0.02 2.51 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.51 8.04 -2.39 -0.02 2.49 16 35 H 0.08 3.46 7.64 -2.39 -0.02 3.44 16 36 H 0.38 19.08 7.28 -74.06 -0.54 18.54 16 37 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 38 H 0.04 2.08 8.07 -2.39 -0.02 2.06 16 39 H 0.06 2.81 7.66 -2.39 -0.02 2.79 16 40 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.06 1.99 6.48 -2.39 -0.02 1.98 16 42 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 47 H 0.13 2.41 7.29 -2.91 -0.02 2.39 16 Total: -1.00 -63.01 370.94 -0.27 -63.28 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: 0.45 Total: 38.00 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 4.83 Total: 2.10 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -5.57 Total: -88.74 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -2.00 Total: -57.63 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -63.01 -0.27 -63.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844013272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.251 kcal (2) G-P(sol) polarization free energy of solvation -63.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds