Wall clock time and date at job start Tue Mar 31 2020 17:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32996 * 1 3 3 C 1.47099 * 120.00151 * 2 1 4 4 O 1.21613 * 120.00071 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99916 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99696 * 359.97438 * 5 3 2 7 7 C 1.53001 * 109.47218 * 270.00219 * 6 5 3 8 8 C 1.46499 * 120.00022 * 180.02562 * 5 3 2 9 9 C 1.50700 * 109.46932 * 89.99263 * 8 5 3 10 10 O 1.21286 * 120.00350 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99602 * 179.97438 * 9 8 5 12 12 C 1.46504 * 120.00240 * 4.74832 * 11 9 8 13 13 C 1.50697 * 109.46906 * 269.99669 * 12 11 9 14 14 H 1.07996 * 120.00003 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99940 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00323 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00107 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47350 * 89.99503 * 17 15 13 19 19 H 1.48500 * 109.47361 * 209.99979 * 17 15 13 20 20 H 1.48503 * 109.47252 * 329.99950 * 17 15 13 21 21 C 1.39921 * 120.00016 * 184.74106 * 11 9 8 22 22 C 1.38866 * 120.06940 * 67.89916 * 21 11 9 23 23 C 1.38120 * 119.92956 * 180.29955 * 22 21 11 24 24 C 1.38279 * 120.06773 * 359.46697 * 23 22 21 25 25 C 1.50699 * 119.93129 * 180.27849 * 24 23 22 26 26 C 1.38280 * 120.14278 * 0.51058 * 24 23 22 27 27 C 1.38114 * 120.06964 * 359.76678 * 26 24 23 28 28 H 1.08010 * 119.99653 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00419 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99417 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47180 * 30.00149 * 6 5 3 32 32 H 1.09000 * 109.46942 * 150.00220 * 6 5 3 33 33 H 1.08999 * 109.47333 * 300.00728 * 7 6 5 34 34 H 1.09000 * 109.47163 * 60.00136 * 7 6 5 35 35 H 1.08991 * 109.47139 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.47012 * 329.99690 * 8 5 3 37 37 H 1.08999 * 109.47002 * 209.99494 * 8 5 3 38 38 H 1.09003 * 109.47092 * 29.99474 * 12 11 9 39 39 H 1.08997 * 109.47384 * 149.99417 * 12 11 9 40 40 H 0.96997 * 120.00293 * 179.97438 * 16 15 13 41 41 H 1.08000 * 120.03690 * 0.02562 * 22 21 11 42 42 H 1.08000 * 119.96441 * 179.70011 * 23 22 21 43 43 H 1.08997 * 109.47146 * 270.23432 * 25 24 23 44 44 H 1.08998 * 109.46604 * 30.23114 * 25 24 23 45 45 H 1.08997 * 109.47241 * 150.23012 * 25 24 23 46 46 H 1.08005 * 119.96724 * 179.74723 * 26 24 23 47 47 H 1.08004 * 120.03288 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4575 2.3271 -0.0005 5 7 3.4133 1.2738 -0.0005 6 6 4.1457 0.0050 -0.0005 7 6 4.4012 -0.4364 1.4420 8 6 4.1459 2.5425 0.0000 9 6 4.3974 2.9766 1.4211 10 8 4.0040 2.2933 2.3427 11 7 5.0605 4.1238 1.6678 12 6 5.4454 5.0005 0.5590 13 6 6.8141 4.6112 0.0627 14 1 7.3443 3.7930 0.5270 15 6 7.3893 5.2998 -0.9842 16 7 8.5840 4.9604 -1.4171 17 14 6.4725 6.7155 -1.7870 18 1 6.8129 7.9830 -1.0922 19 1 6.8655 6.8131 -3.2157 20 1 5.0101 6.4759 -1.6912 21 6 5.3812 4.4775 2.9831 22 6 6.3128 3.7343 3.6960 23 6 6.6226 4.0823 4.9962 24 6 6.0144 5.1760 5.5844 25 6 6.3594 5.5567 7.0011 26 6 5.0867 5.9184 4.8770 27 6 4.7683 5.5722 3.5784 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8699 -0.9354 0.0004 31 1 3.5564 -0.7546 -0.5140 32 1 5.0979 0.1352 -0.5147 33 1 4.9904 0.3233 1.9555 34 1 3.4489 -0.5666 1.9562 35 1 4.9464 -1.3801 1.4420 36 1 3.5566 3.3026 -0.5131 37 1 5.0981 2.4124 -0.5142 38 1 4.7231 4.9002 -0.2512 39 1 5.4642 6.0346 0.9030 40 1 8.9885 5.4446 -2.1538 41 1 6.7913 2.8824 3.2357 42 1 7.3435 3.5018 5.5528 43 1 5.6910 5.0395 7.6893 44 1 7.3901 5.2722 7.2129 45 1 6.2469 6.6337 7.1256 46 1 4.6104 6.7697 5.3405 47 1 4.0434 6.1522 3.0266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900417700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:52 Heat of formation + Delta-G solvation = -11.740518 kcal Electronic energy + Delta-G solvation = -28931.248321 eV Core-core repulsion = 25080.167443 eV Total energy + Delta-G solvation = -3851.080879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.31990 -39.44273 -38.04208 -35.81487 -35.14153 -33.03259 -32.77198 -31.67739 -30.59487 -30.57699 -28.20210 -27.92557 -25.71421 -23.67530 -22.97296 -22.42559 -22.01039 -21.11683 -19.10822 -18.36914 -17.57223 -17.08775 -16.89116 -16.29598 -15.81604 -15.24083 -15.01389 -14.63231 -14.41583 -14.18216 -13.89891 -13.75326 -13.53698 -13.38831 -13.34988 -13.08346 -12.95138 -12.59260 -12.42472 -12.16619 -12.10667 -12.01315 -11.66198 -11.61379 -11.45229 -11.32007 -11.08495 -10.86720 -10.72093 -10.67224 -10.32043 -9.83276 -9.72457 -9.70648 -9.52264 -8.78657 -8.55834 -8.53001 -8.37171 -7.62875 -6.27660 -4.30295 1.43435 1.68096 1.81226 3.01388 3.15986 3.20687 3.23734 3.26109 3.47275 3.81281 4.13269 4.22531 4.62623 4.93718 5.02949 5.10927 5.12849 5.15241 5.22014 5.36216 5.44852 5.46951 5.54570 5.55405 5.68952 5.69941 5.77868 5.83249 5.87520 5.93675 6.02500 6.04035 6.08845 6.20684 6.26960 6.38525 6.45486 6.51172 6.57057 6.65087 6.68321 6.91193 6.97275 7.13420 7.35666 7.55481 7.57696 7.96630 8.29324 8.35465 8.74100 8.83461 9.31067 10.84405 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.007727 B = 0.005225 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.704144 B = 5357.095737 C = 7620.716465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.205 4.205 3 C 0.548 3.452 4 O -0.546 6.546 5 N -0.589 5.589 6 C 0.106 3.894 7 C -0.168 4.168 8 C 0.100 3.900 9 C 0.511 3.489 10 O -0.541 6.541 11 N -0.556 5.556 12 C 0.208 3.792 13 C -0.543 4.543 14 H 0.080 0.920 15 C 0.080 3.920 16 N -0.887 5.887 17 Si 0.867 3.133 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.171 3.829 22 C -0.098 4.098 23 C -0.112 4.112 24 C -0.103 4.103 25 C -0.108 4.108 26 C -0.113 4.113 27 C -0.123 4.123 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.267 0.733 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.119 0.881 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.375 -7.308 6.370 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.226 4.226 3 C 0.338 3.662 4 O -0.425 6.425 5 N -0.320 5.320 6 C -0.017 4.017 7 C -0.226 4.226 8 C -0.026 4.026 9 C 0.299 3.701 10 O -0.419 6.419 11 N -0.284 5.284 12 C 0.088 3.912 13 C -0.581 4.581 14 H 0.098 0.902 15 C -0.124 4.124 16 N -0.525 5.525 17 Si 0.694 3.306 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.187 1.187 21 C 0.080 3.920 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.104 4.104 25 C -0.165 4.165 26 C -0.132 4.132 27 C -0.142 4.142 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.137 0.863 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.737 -7.074 6.648 13.060 hybrid contribution -0.013 0.828 -0.618 1.033 sum -8.750 -6.246 6.031 12.326 Atomic orbital electron populations 1.24690 0.95391 1.03030 0.91085 1.22885 0.96288 0.97236 1.06176 1.18639 0.81856 0.89841 0.75876 1.90765 1.67910 1.33438 1.50344 1.47518 1.05460 1.06612 1.72404 1.21676 0.97264 0.84717 0.98032 1.22214 1.02572 1.01314 0.96491 1.21423 0.99568 0.86799 0.94781 1.20979 0.77070 0.80142 0.91924 1.90626 1.51284 1.53673 1.46298 1.45585 1.55140 1.22268 1.05389 1.19975 0.97111 0.90022 0.84125 1.21289 1.00093 1.19317 1.17402 0.90204 1.24824 0.94617 0.96726 0.96210 1.69876 1.14809 1.40836 1.26932 0.86977 0.80931 0.83374 0.79354 1.19794 1.20712 1.18681 1.17513 0.94645 0.94951 0.84924 1.21193 0.96065 1.00020 0.94439 1.20816 1.00395 0.97112 0.94738 1.19802 0.97936 0.96234 0.96391 1.20716 1.01493 1.01386 0.92864 1.20755 0.98462 0.99936 0.94054 1.21177 0.99860 0.98053 0.95136 0.86944 0.86930 0.85415 0.90300 0.89889 0.90906 0.92543 0.92400 0.87167 0.85706 0.94377 0.94869 0.92256 0.86195 0.86285 0.91676 0.91830 0.91895 0.86294 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 14.31 28.91 0.41 -0.67 16 2 C -0.21 -2.52 9.21 -37.81 -0.35 -2.87 16 3 C 0.55 9.24 7.62 -12.66 -0.10 9.14 16 4 O -0.55 -11.18 15.80 5.27 0.08 -11.10 16 5 N -0.59 -9.54 2.03 -176.46 -0.36 -9.90 16 6 C 0.11 1.32 5.89 -4.04 -0.02 1.30 16 7 C -0.17 -2.21 9.50 37.16 0.35 -1.86 16 8 C 0.10 1.85 4.59 -5.19 -0.02 1.82 16 9 C 0.51 10.63 7.50 -10.99 -0.08 10.55 16 10 O -0.54 -12.00 13.77 5.55 0.08 -11.92 16 11 N -0.56 -11.84 2.51 -114.74 -0.29 -12.12 16 12 C 0.21 4.65 3.95 -5.19 -0.02 4.62 16 13 C -0.54 -13.91 9.71 -34.44 -0.33 -14.24 16 14 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 15 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 16 N -0.89 -25.08 13.96 55.43 0.77 -24.31 16 17 Si 0.87 19.66 27.47 -169.99 -4.67 15.00 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 21 C 0.17 3.48 4.75 -83.70 -0.40 3.09 16 22 C -0.10 -1.88 9.55 -39.39 -0.38 -2.25 16 23 C -0.11 -1.82 9.69 -39.61 -0.38 -2.21 16 24 C -0.10 -1.55 5.88 -104.59 -0.62 -2.17 16 25 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 26 C -0.11 -1.78 9.69 -39.61 -0.38 -2.16 16 27 C -0.12 -2.24 9.69 -39.39 -0.38 -2.62 16 28 H 0.11 1.33 7.49 -52.48 -0.39 0.94 16 29 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.13 1.21 6.23 -52.49 -0.33 0.88 16 31 H 0.08 0.75 6.09 -51.93 -0.32 0.43 16 32 H 0.08 0.99 7.89 -51.93 -0.41 0.58 16 33 H 0.07 1.20 6.38 -51.93 -0.33 0.87 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 2.10 6.54 -51.93 -0.34 1.76 16 37 H 0.13 2.26 7.66 -51.93 -0.40 1.86 16 38 H 0.04 0.83 5.53 -51.93 -0.29 0.54 16 39 H 0.03 0.74 7.29 -51.93 -0.38 0.36 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 42 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 45 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 46 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 47 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 391.66 15.07 5.90 5.90 Total: -1.00 -32.64 391.66 -7.91 -40.55 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.99 Total: 7.24 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.44 Total: 0.66 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.13 Total: -46.33 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.16 Total: -23.02 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.64 -7.91 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900417700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.810 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds