Wall clock time and date at job start Tue Mar 31 2020 17:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32996 * 1 3 3 C 1.47099 * 120.00151 * 2 1 4 4 O 1.21613 * 120.00071 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99916 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99696 * 359.97438 * 5 3 2 7 7 C 1.53001 * 109.47218 * 270.00219 * 6 5 3 8 8 C 1.46499 * 120.00022 * 180.02562 * 5 3 2 9 9 C 1.50700 * 109.46932 * 89.99263 * 8 5 3 10 10 O 1.21286 * 120.00350 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99602 * 179.97438 * 9 8 5 12 12 C 1.46504 * 120.00240 * 4.74832 * 11 9 8 13 13 C 1.50697 * 109.46906 * 269.99669 * 12 11 9 14 14 H 1.07996 * 120.00003 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99940 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00323 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00107 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47350 * 89.99503 * 17 15 13 19 19 H 1.48500 * 109.47361 * 209.99979 * 17 15 13 20 20 H 1.48503 * 109.47252 * 329.99950 * 17 15 13 21 21 C 1.39921 * 120.00016 * 184.74106 * 11 9 8 22 22 C 1.38866 * 120.06940 * 67.89916 * 21 11 9 23 23 C 1.38120 * 119.92956 * 180.29955 * 22 21 11 24 24 C 1.38279 * 120.06773 * 359.46697 * 23 22 21 25 25 C 1.50699 * 119.93129 * 180.27849 * 24 23 22 26 26 C 1.38280 * 120.14278 * 0.51058 * 24 23 22 27 27 C 1.38114 * 120.06964 * 359.76678 * 26 24 23 28 28 H 1.08010 * 119.99653 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00419 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99417 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47180 * 30.00149 * 6 5 3 32 32 H 1.09000 * 109.46942 * 150.00220 * 6 5 3 33 33 H 1.08999 * 109.47333 * 300.00728 * 7 6 5 34 34 H 1.09000 * 109.47163 * 60.00136 * 7 6 5 35 35 H 1.08991 * 109.47139 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.47012 * 329.99690 * 8 5 3 37 37 H 1.08999 * 109.47002 * 209.99494 * 8 5 3 38 38 H 1.09003 * 109.47092 * 29.99474 * 12 11 9 39 39 H 1.08997 * 109.47384 * 149.99417 * 12 11 9 40 40 H 0.96997 * 120.00293 * 179.97438 * 16 15 13 41 41 H 1.08000 * 120.03690 * 0.02562 * 22 21 11 42 42 H 1.08000 * 119.96441 * 179.70011 * 23 22 21 43 43 H 1.08997 * 109.47146 * 270.23432 * 25 24 23 44 44 H 1.08998 * 109.46604 * 30.23114 * 25 24 23 45 45 H 1.08997 * 109.47241 * 150.23012 * 25 24 23 46 46 H 1.08005 * 119.96724 * 179.74723 * 26 24 23 47 47 H 1.08004 * 120.03288 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4575 2.3271 -0.0005 5 7 3.4133 1.2738 -0.0005 6 6 4.1457 0.0050 -0.0005 7 6 4.4012 -0.4364 1.4420 8 6 4.1459 2.5425 0.0000 9 6 4.3974 2.9766 1.4211 10 8 4.0040 2.2933 2.3427 11 7 5.0605 4.1238 1.6678 12 6 5.4454 5.0005 0.5590 13 6 6.8141 4.6112 0.0627 14 1 7.3443 3.7930 0.5270 15 6 7.3893 5.2998 -0.9842 16 7 8.5840 4.9604 -1.4171 17 14 6.4725 6.7155 -1.7870 18 1 6.8129 7.9830 -1.0922 19 1 6.8655 6.8131 -3.2157 20 1 5.0101 6.4759 -1.6912 21 6 5.3812 4.4775 2.9831 22 6 6.3128 3.7343 3.6960 23 6 6.6226 4.0823 4.9962 24 6 6.0144 5.1760 5.5844 25 6 6.3594 5.5567 7.0011 26 6 5.0867 5.9184 4.8770 27 6 4.7683 5.5722 3.5784 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8699 -0.9354 0.0004 31 1 3.5564 -0.7546 -0.5140 32 1 5.0979 0.1352 -0.5147 33 1 4.9904 0.3233 1.9555 34 1 3.4489 -0.5666 1.9562 35 1 4.9464 -1.3801 1.4420 36 1 3.5566 3.3026 -0.5131 37 1 5.0981 2.4124 -0.5142 38 1 4.7231 4.9002 -0.2512 39 1 5.4642 6.0346 0.9030 40 1 8.9885 5.4446 -2.1538 41 1 6.7913 2.8824 3.2357 42 1 7.3435 3.5018 5.5528 43 1 5.6910 5.0395 7.6893 44 1 7.3901 5.2722 7.2129 45 1 6.2469 6.6337 7.1256 46 1 4.6104 6.7697 5.3405 47 1 4.0434 6.1522 3.0266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900417700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:51 Heat of formation + Delta-G solvation = -30.238537 kcal Electronic energy + Delta-G solvation = -28932.050455 eV Core-core repulsion = 25080.167443 eV Total energy + Delta-G solvation = -3851.883013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.79244 -40.78357 -39.46579 -37.18853 -36.72857 -34.72560 -34.00038 -33.04855 -31.92571 -31.79217 -29.96081 -29.32695 -26.96409 -24.87023 -24.66877 -23.58474 -23.51258 -22.38600 -20.53965 -19.57106 -19.16853 -18.74111 -18.37335 -17.94188 -17.11421 -16.73502 -16.34145 -16.16854 -15.92472 -15.61721 -15.16910 -15.06083 -14.78137 -14.61195 -14.54289 -14.40380 -14.34018 -14.16917 -13.82496 -13.72141 -13.29258 -13.25070 -13.03732 -12.88152 -12.78988 -12.57345 -12.47747 -12.44836 -12.15499 -11.96389 -11.92198 -11.73843 -11.12605 -10.99350 -10.82736 -10.75323 -10.06454 -9.89795 -9.76531 -9.13697 -8.34136 -6.41641 0.30885 0.44674 0.45368 1.35702 1.38126 1.46418 1.56137 1.73197 2.23439 2.29801 2.37820 2.76890 2.99236 3.58078 3.66807 3.91305 3.99254 4.02114 4.04890 4.16808 4.23298 4.29874 4.39529 4.44838 4.46687 4.50960 4.56882 4.68264 4.75309 4.75667 4.80802 4.82554 4.89690 4.90751 5.10465 5.14523 5.27815 5.30682 5.33523 5.36823 5.43806 5.49788 5.56733 5.64337 5.73813 6.06072 6.17377 6.36163 6.43264 6.62093 7.06496 7.16648 7.26036 8.81303 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.007727 B = 0.005225 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3622.704144 B = 5357.095737 C = 7620.716465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.226 4.226 3 C 0.535 3.465 4 O -0.596 6.596 5 N -0.591 5.591 6 C 0.100 3.900 7 C -0.160 4.160 8 C 0.106 3.894 9 C 0.505 3.495 10 O -0.559 6.559 11 N -0.559 5.559 12 C 0.218 3.782 13 C -0.537 4.537 14 H 0.037 0.963 15 C 0.030 3.970 16 N -0.933 5.933 17 Si 0.930 3.070 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.244 1.244 21 C 0.129 3.871 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.097 4.097 25 C -0.105 4.105 26 C -0.110 4.110 27 C -0.138 4.138 28 H 0.092 0.908 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.048 0.952 39 H 0.038 0.962 40 H 0.270 0.730 41 H 0.098 0.902 42 H 0.144 0.856 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.155 0.845 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 -7.468 7.467 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.246 4.246 3 C 0.328 3.672 4 O -0.479 6.479 5 N -0.321 5.321 6 C -0.021 4.021 7 C -0.218 4.218 8 C -0.021 4.021 9 C 0.294 3.706 10 O -0.438 6.438 11 N -0.287 5.287 12 C 0.097 3.903 13 C -0.576 4.576 14 H 0.056 0.944 15 C -0.170 4.170 16 N -0.572 5.572 17 Si 0.753 3.247 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.167 1.167 21 C 0.039 3.961 22 C -0.142 4.142 23 C -0.134 4.134 24 C -0.097 4.097 25 C -0.161 4.161 26 C -0.128 4.128 27 C -0.157 4.157 28 H 0.111 0.889 29 H 0.176 0.824 30 H 0.179 0.821 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.161 0.839 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.172 0.828 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.327 -7.265 7.764 14.822 hybrid contribution 0.506 0.807 -0.813 1.252 sum -9.821 -6.458 6.951 13.656 Atomic orbital electron populations 1.25028 0.94818 1.04262 0.87511 1.22945 0.96815 0.95938 1.08892 1.19563 0.81884 0.91119 0.74660 1.90725 1.68776 1.35528 1.52832 1.47715 1.05747 1.06755 1.71874 1.21975 0.97961 0.84056 0.98079 1.22124 1.01901 1.01404 0.96337 1.21238 0.99477 0.88248 0.93156 1.21405 0.76659 0.79887 0.92690 1.90589 1.52084 1.54022 1.47084 1.45581 1.55040 1.22269 1.05793 1.19765 0.95334 0.90338 0.84865 1.21323 1.01252 1.17944 1.17063 0.94429 1.25610 0.95285 0.99366 0.96716 1.70010 1.16696 1.42579 1.27915 0.85967 0.80598 0.79837 0.78274 1.19175 1.20319 1.16731 1.17892 0.96501 0.96800 0.84933 1.21218 0.96900 1.00009 0.96110 1.21148 1.00735 0.97873 0.93602 1.20324 0.96341 0.94761 0.98249 1.20800 1.02598 1.02790 0.89961 1.21197 0.98061 1.00646 0.92906 1.21379 1.00191 0.97588 0.96577 0.88915 0.82366 0.82104 0.86153 0.89588 0.95076 0.93037 0.89327 0.88067 0.86079 0.93410 0.94369 0.92068 0.88415 0.83851 0.90034 0.90601 0.90053 0.82753 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 14.31 66.65 0.95 -0.48 16 2 C -0.23 -5.10 9.21 23.43 0.22 -4.89 16 3 C 0.53 18.18 7.62 86.57 0.66 18.84 16 4 O -0.60 -25.27 15.80 -4.07 -0.06 -25.33 16 5 N -0.59 -19.57 2.03 -830.43 -1.68 -21.25 16 6 C 0.10 2.45 5.89 86.38 0.51 2.96 16 7 C -0.16 -4.19 9.50 71.98 0.68 -3.51 16 8 C 0.11 4.13 4.59 85.63 0.39 4.52 16 9 C 0.50 22.32 7.50 87.66 0.66 22.98 16 10 O -0.56 -26.22 13.77 -3.05 -0.04 -26.26 16 11 N -0.56 -25.15 2.51 -635.31 -1.59 -26.74 16 12 C 0.22 10.07 3.95 85.63 0.34 10.41 16 13 C -0.54 -28.89 9.71 25.60 0.25 -28.64 16 14 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 15 C 0.03 1.64 5.47 84.65 0.46 2.10 16 16 N -0.93 -54.56 13.96 21.45 0.30 -54.26 16 17 Si 0.93 40.73 27.47 68.60 1.88 42.62 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 21 C 0.13 5.51 4.75 38.15 0.18 5.69 16 22 C -0.12 -4.99 9.55 22.39 0.21 -4.78 16 23 C -0.12 -3.72 9.69 22.25 0.22 -3.51 16 24 C -0.10 -2.70 5.88 -19.85 -0.12 -2.82 16 25 C -0.11 -1.94 10.01 71.24 0.71 -1.23 16 26 C -0.11 -3.24 9.69 22.25 0.22 -3.02 16 27 C -0.14 -5.07 9.69 22.39 0.22 -4.85 16 28 H 0.09 2.11 7.49 -2.91 -0.02 2.09 16 29 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.16 2.46 6.23 -2.91 -0.02 2.44 16 31 H 0.12 1.95 6.09 -2.39 -0.01 1.94 16 32 H 0.09 2.04 7.89 -2.39 -0.02 2.02 16 33 H 0.03 1.07 6.38 -2.39 -0.02 1.06 16 34 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.10 4.09 6.54 -2.38 -0.02 4.07 16 37 H 0.12 4.71 7.66 -2.39 -0.02 4.69 16 38 H 0.05 2.12 5.53 -2.39 -0.01 2.11 16 39 H 0.04 1.73 7.29 -2.39 -0.02 1.71 16 40 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.10 4.25 8.06 -2.91 -0.02 4.22 16 42 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 45 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 46 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 47 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -76.80 391.66 6.47 -70.34 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.90 Total: 31.11 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.76 Total: 9.79 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -2.97 Total: -102.26 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.11 Total: -51.60 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.88 Total: 42.62 kcal Total: -76.80 6.47 -70.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900417700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.097 kcal (2) G-P(sol) polarization free energy of solvation -76.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds