Wall clock time and date at job start Tue Mar 31 2020 16:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47112 * 2 1 4 4 C 1.34425 * 124.35174 * 89.97188 * 3 2 1 5 5 O 1.21283 * 124.94007 * 359.34579 * 4 3 2 6 6 C 1.51282 * 110.11429 * 179.61169 * 4 3 2 7 7 C 1.54624 * 104.19894 * 343.75101 * 6 4 3 8 8 H 1.08998 * 110.97460 * 142.91853 * 7 6 4 9 9 C 1.50706 * 110.96760 * 266.67752 * 7 6 4 10 10 O 1.21291 * 119.99731 * 30.16117 * 9 7 6 11 11 N 1.34769 * 119.99933 * 210.15500 * 9 7 6 12 12 C 1.46496 * 120.00137 * 0.02562 * 11 9 7 13 13 C 1.37099 * 120.00056 * 179.97438 * 11 9 7 14 14 H 1.08011 * 119.99725 * 24.57739 * 13 11 9 15 15 C 1.38947 * 120.00517 * 204.57066 * 13 11 9 16 16 N 1.31417 * 119.99723 * 11.06033 * 15 13 11 17 17 Si 1.86805 * 120.00345 * 191.06328 * 15 13 11 18 18 H 1.48503 * 109.46708 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47273 * 120.00061 * 17 15 13 20 20 H 1.48505 * 109.46880 * 240.00184 * 17 15 13 21 21 C 1.46768 * 124.35058 * 269.99811 * 3 2 1 22 22 H 1.09001 * 110.24699 * 77.99050 * 21 3 2 23 23 C 1.50703 * 110.24267 * 315.99409 * 21 3 2 24 24 C 1.38259 * 120.00098 * 323.72802 * 23 21 3 25 25 C 1.38211 * 120.00210 * 179.97438 * 24 23 21 26 26 C 1.38257 * 119.99537 * 0.02562 * 25 24 23 27 27 C 1.38210 * 120.00473 * 359.97438 * 26 25 24 28 28 C 1.50701 * 119.99965 * 179.97438 * 27 26 25 29 29 C 1.38215 * 120.00113 * 143.45104 * 23 21 3 30 30 H 1.09004 * 109.46842 * 60.00481 * 1 2 3 31 31 H 1.09004 * 109.47424 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47869 * 300.00554 * 1 2 3 33 33 H 1.09000 * 109.47137 * 239.99576 * 2 1 3 34 34 H 1.09004 * 109.46842 * 119.99519 * 2 1 3 35 35 H 1.09008 * 110.48377 * 102.43001 * 6 4 3 36 36 H 1.08997 * 110.48518 * 225.07046 * 6 4 3 37 37 H 1.09001 * 109.47172 * 86.46392 * 12 11 9 38 38 H 1.09007 * 109.47318 * 206.46285 * 12 11 9 39 39 H 1.08998 * 109.47444 * 326.46714 * 12 11 9 40 40 H 0.97001 * 119.99436 * 180.02562 * 16 15 13 41 41 H 1.08006 * 119.99999 * 359.97438 * 24 23 21 42 42 H 1.07993 * 120.00121 * 180.02562 * 25 24 23 43 43 H 1.08007 * 119.99338 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.47317 * 90.00275 * 28 27 26 45 45 H 1.09003 * 109.47192 * 210.00472 * 28 27 26 46 46 H 1.09004 * 109.47359 * 330.00288 * 28 27 26 47 47 H 1.08002 * 119.99801 * 0.02562 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2706 2.0965 1.1098 5 8 2.1165 1.6962 2.2442 6 6 2.7687 3.4757 0.7378 7 6 3.1740 3.3444 -0.7486 8 1 2.9302 4.2518 -1.3011 9 6 4.6379 3.0119 -0.8810 10 8 5.1945 2.3691 -0.0160 11 7 5.3286 3.4286 -1.9606 12 6 4.6565 4.2053 -3.0052 13 6 6.6605 3.1266 -2.0809 14 1 7.0674 2.2662 -1.5701 15 6 7.4870 3.9271 -2.8599 16 7 7.0522 5.0855 -3.3026 17 14 9.2160 3.3566 -3.2779 18 1 9.4609 2.0274 -2.6627 19 1 9.3606 3.2544 -4.7522 20 1 10.2010 4.3348 -2.7505 21 6 2.2944 2.1619 -1.2117 22 1 1.3637 2.5304 -1.6432 23 6 3.0388 1.3203 -2.2160 24 6 3.9783 0.4012 -1.7868 25 6 4.6606 -0.3711 -2.7078 26 6 4.4039 -0.2242 -4.0584 27 6 3.4647 0.6945 -4.4875 28 6 3.1854 0.8549 -5.9597 29 6 2.7781 1.4630 -3.5659 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3635 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.9734 4.2123 0.8527 36 1 3.6316 3.7466 1.3460 37 1 4.6774 5.2628 -2.7419 38 1 5.1700 4.0572 -3.9553 39 1 3.6221 3.8739 -3.0957 40 1 7.6291 5.6441 -3.8467 41 1 4.1791 0.2868 -0.7318 42 1 5.3942 -1.0892 -2.3726 43 1 4.9374 -0.8274 -4.7781 44 1 2.3867 0.1742 -6.2543 45 1 2.8807 1.8818 -6.1619 46 1 4.0868 0.6249 -6.5278 47 1 2.0413 2.1780 -3.9009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900452603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:52 Heat of formation + Delta-G solvation = -29.084616 kcal Electronic energy + Delta-G solvation = -30682.341442 eV Core-core repulsion = 26830.508467 eV Total energy + Delta-G solvation = -3851.832975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97522 -38.73831 -38.05795 -36.07699 -34.68122 -33.56509 -32.44754 -31.59204 -31.05352 -29.44328 -27.02572 -26.56553 -26.16374 -24.77694 -23.41987 -22.54166 -21.70459 -20.61527 -19.02843 -18.51514 -17.13960 -16.70551 -16.36468 -16.05083 -15.38706 -15.14791 -14.75519 -14.59535 -14.23011 -14.17661 -13.94475 -13.64232 -13.45098 -13.27416 -12.98702 -12.79401 -12.61797 -12.52775 -12.17971 -12.01382 -11.99552 -11.81247 -11.63407 -11.39265 -11.34723 -11.17928 -11.10160 -10.96587 -10.84680 -10.65390 -10.56553 -10.33168 -10.25538 -9.41607 -8.99783 -8.65965 -8.40753 -8.28646 -8.14948 -7.62601 -6.31741 -3.86404 1.66990 1.80353 2.94770 3.13258 3.24304 3.24624 3.30775 3.75823 4.10251 4.12453 4.62362 4.64914 4.81093 5.01825 5.10866 5.15717 5.18238 5.26207 5.30098 5.32260 5.43456 5.46522 5.50033 5.58504 5.67964 5.72725 5.76880 5.87238 5.89289 5.95809 5.98025 6.02802 6.06401 6.18351 6.26933 6.34346 6.36814 6.46325 6.72692 6.85792 6.87772 6.94091 7.00802 7.20209 7.36749 7.42351 7.57159 8.15279 8.49790 8.51556 9.20439 9.43896 9.99990 10.72890 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.005756 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.407112 B = 4863.351526 C = 6087.142382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.120 3.880 3 N -0.607 5.607 4 C 0.535 3.465 5 O -0.540 6.540 6 C -0.136 4.136 7 C -0.114 4.114 8 H 0.106 0.894 9 C 0.462 3.538 10 O -0.582 6.582 11 N -0.432 5.432 12 C 0.114 3.886 13 C -0.293 4.293 14 H 0.095 0.905 15 C 0.031 3.969 16 N -0.883 5.883 17 Si 0.920 3.080 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.191 3.809 22 H 0.087 0.913 23 C -0.096 4.096 24 C -0.076 4.076 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.091 4.091 28 C -0.109 4.109 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.024 0.976 40 H 0.265 0.735 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.201 -5.710 -5.052 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.001 4.001 3 N -0.341 5.341 4 C 0.324 3.676 5 O -0.417 6.417 6 C -0.176 4.176 7 C -0.136 4.136 8 H 0.125 0.875 9 C 0.249 3.751 10 O -0.466 6.466 11 N -0.149 5.149 12 C -0.030 4.030 13 C -0.421 4.421 14 H 0.113 0.887 15 C -0.172 4.172 16 N -0.522 5.522 17 Si 0.748 3.252 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.087 3.913 22 H 0.105 0.895 23 C -0.097 4.097 24 C -0.095 4.095 25 C -0.131 4.131 26 C -0.129 4.129 27 C -0.091 4.091 28 C -0.166 4.166 29 C -0.121 4.121 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.933 -6.152 -4.170 14.058 hybrid contribution 1.052 0.109 -0.555 1.195 sum -10.881 -6.043 -4.725 13.313 Atomic orbital electron populations 1.22136 0.96112 1.01934 1.02177 1.21327 0.93843 0.81743 1.03229 1.48214 1.65661 1.13608 1.06595 1.20711 0.75230 0.87623 0.84017 1.90660 1.54214 1.75746 1.21122 1.22215 1.03338 0.95583 0.96463 1.22428 0.96182 0.98510 0.96498 0.87546 1.19350 0.86820 0.85943 0.83008 1.90538 1.70528 1.44163 1.41420 1.43391 1.08976 1.46628 1.15936 1.21484 0.92988 0.95161 0.93367 1.19584 0.83061 1.10260 1.29171 0.88720 1.25284 0.99575 0.94564 0.97747 1.69991 1.37261 1.09409 1.35588 0.85946 0.82263 0.79012 0.78025 1.19335 1.20769 1.20819 1.20418 0.96509 0.90027 0.84385 0.89498 1.19676 0.98443 0.98025 0.93522 1.21033 0.93879 0.94243 1.00304 1.21016 0.99061 0.99891 0.93104 1.20934 0.97844 0.98517 0.95646 1.19679 0.97173 0.96877 0.95406 1.20723 1.01678 1.02040 0.92122 1.20645 1.00165 0.99384 0.91857 0.92538 0.91776 0.92396 0.90165 0.90307 0.87990 0.87116 0.93322 0.90767 0.95737 0.92437 0.85688 0.86623 0.86777 0.91849 0.91682 0.91821 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.12 1.64 5.88 -4.04 -0.02 1.62 16 3 N -0.61 -9.56 2.17 -166.19 -0.36 -9.92 16 4 C 0.54 9.78 7.87 -10.86 -0.09 9.70 16 5 O -0.54 -11.47 17.60 5.56 0.10 -11.38 16 6 C -0.14 -2.25 6.09 -26.74 -0.16 -2.41 16 7 C -0.11 -1.95 2.51 -90.14 -0.23 -2.17 16 8 H 0.11 1.60 6.58 -51.93 -0.34 1.26 16 9 C 0.46 10.35 4.22 -10.99 -0.05 10.30 16 10 O -0.58 -15.18 14.52 5.55 0.08 -15.10 16 11 N -0.43 -10.26 2.96 -122.19 -0.36 -10.62 16 12 C 0.11 2.38 8.03 59.84 0.48 2.86 16 13 C -0.29 -7.80 9.24 -14.93 -0.14 -7.94 16 14 H 0.10 2.71 7.44 -52.48 -0.39 2.32 16 15 C 0.03 0.80 5.08 -17.47 -0.09 0.71 16 16 N -0.88 -22.84 10.75 55.50 0.60 -22.25 16 17 Si 0.92 20.59 29.57 -169.99 -5.03 15.56 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.19 2.85 3.42 -68.16 -0.23 2.62 16 22 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 23 C -0.10 -1.52 3.12 -104.62 -0.33 -1.85 16 24 C -0.08 -1.36 5.96 -39.58 -0.24 -1.59 16 25 C -0.11 -1.87 10.05 -39.58 -0.40 -2.27 16 26 C -0.11 -1.68 9.70 -39.58 -0.38 -2.06 16 27 C -0.09 -1.30 5.88 -104.63 -0.62 -1.91 16 28 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 29 C -0.10 -1.46 8.14 -39.58 -0.32 -1.78 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.05 6.20 -51.93 -0.32 0.73 16 34 H 0.08 1.16 7.93 -51.93 -0.41 0.74 16 35 H 0.10 1.31 8.14 -51.92 -0.42 0.89 16 36 H 0.11 2.07 7.61 -51.93 -0.40 1.68 16 37 H 0.05 1.06 7.80 -51.93 -0.40 0.65 16 38 H 0.07 1.69 6.81 -51.92 -0.35 1.34 16 39 H 0.02 0.42 5.01 -51.93 -0.26 0.16 16 40 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 41 H 0.13 2.53 6.56 -52.48 -0.34 2.19 16 42 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 46 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 47 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -31.99 373.70 -8.41 -40.39 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.00 Total: 6.17 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.06 Total: 1.51 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.13 Total: -42.79 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: 0.18 Total: -26.47 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.99 -8.41 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900452603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.308 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds