Wall clock time and date at job start Tue Mar 31 2020 16:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47112 * 2 1 4 4 C 1.34425 * 124.35174 * 89.97188 * 3 2 1 5 5 O 1.21283 * 124.94007 * 359.34579 * 4 3 2 6 6 C 1.51282 * 110.11429 * 179.61169 * 4 3 2 7 7 C 1.54624 * 104.19894 * 343.75101 * 6 4 3 8 8 H 1.08998 * 110.97460 * 142.91853 * 7 6 4 9 9 C 1.50706 * 110.96760 * 266.67752 * 7 6 4 10 10 O 1.21291 * 119.99731 * 30.16117 * 9 7 6 11 11 N 1.34769 * 119.99933 * 210.15500 * 9 7 6 12 12 C 1.46496 * 120.00137 * 0.02562 * 11 9 7 13 13 C 1.37099 * 120.00056 * 179.97438 * 11 9 7 14 14 H 1.08011 * 119.99725 * 24.57739 * 13 11 9 15 15 C 1.38947 * 120.00517 * 204.57066 * 13 11 9 16 16 N 1.31417 * 119.99723 * 11.06033 * 15 13 11 17 17 Si 1.86805 * 120.00345 * 191.06328 * 15 13 11 18 18 H 1.48503 * 109.46708 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47273 * 120.00061 * 17 15 13 20 20 H 1.48505 * 109.46880 * 240.00184 * 17 15 13 21 21 C 1.46768 * 124.35058 * 269.99811 * 3 2 1 22 22 H 1.09001 * 110.24699 * 77.99050 * 21 3 2 23 23 C 1.50703 * 110.24267 * 315.99409 * 21 3 2 24 24 C 1.38259 * 120.00098 * 323.72802 * 23 21 3 25 25 C 1.38211 * 120.00210 * 179.97438 * 24 23 21 26 26 C 1.38257 * 119.99537 * 0.02562 * 25 24 23 27 27 C 1.38210 * 120.00473 * 359.97438 * 26 25 24 28 28 C 1.50701 * 119.99965 * 179.97438 * 27 26 25 29 29 C 1.38215 * 120.00113 * 143.45104 * 23 21 3 30 30 H 1.09004 * 109.46842 * 60.00481 * 1 2 3 31 31 H 1.09004 * 109.47424 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47869 * 300.00554 * 1 2 3 33 33 H 1.09000 * 109.47137 * 239.99576 * 2 1 3 34 34 H 1.09004 * 109.46842 * 119.99519 * 2 1 3 35 35 H 1.09008 * 110.48377 * 102.43001 * 6 4 3 36 36 H 1.08997 * 110.48518 * 225.07046 * 6 4 3 37 37 H 1.09001 * 109.47172 * 86.46392 * 12 11 9 38 38 H 1.09007 * 109.47318 * 206.46285 * 12 11 9 39 39 H 1.08998 * 109.47444 * 326.46714 * 12 11 9 40 40 H 0.97001 * 119.99436 * 180.02562 * 16 15 13 41 41 H 1.08006 * 119.99999 * 359.97438 * 24 23 21 42 42 H 1.07993 * 120.00121 * 180.02562 * 25 24 23 43 43 H 1.08007 * 119.99338 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.47317 * 90.00275 * 28 27 26 45 45 H 1.09003 * 109.47192 * 210.00472 * 28 27 26 46 46 H 1.09004 * 109.47359 * 330.00288 * 28 27 26 47 47 H 1.08002 * 119.99801 * 0.02562 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2706 2.0965 1.1098 5 8 2.1165 1.6962 2.2442 6 6 2.7687 3.4757 0.7378 7 6 3.1740 3.3444 -0.7486 8 1 2.9302 4.2518 -1.3011 9 6 4.6379 3.0119 -0.8810 10 8 5.1945 2.3691 -0.0160 11 7 5.3286 3.4286 -1.9606 12 6 4.6565 4.2053 -3.0052 13 6 6.6605 3.1266 -2.0809 14 1 7.0674 2.2662 -1.5701 15 6 7.4870 3.9271 -2.8599 16 7 7.0522 5.0855 -3.3026 17 14 9.2160 3.3566 -3.2779 18 1 9.4609 2.0274 -2.6627 19 1 9.3606 3.2544 -4.7522 20 1 10.2010 4.3348 -2.7505 21 6 2.2944 2.1619 -1.2117 22 1 1.3637 2.5304 -1.6432 23 6 3.0388 1.3203 -2.2160 24 6 3.9783 0.4012 -1.7868 25 6 4.6606 -0.3711 -2.7078 26 6 4.4039 -0.2242 -4.0584 27 6 3.4647 0.6945 -4.4875 28 6 3.1854 0.8549 -5.9597 29 6 2.7781 1.4630 -3.5659 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3635 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.9734 4.2123 0.8527 36 1 3.6316 3.7466 1.3460 37 1 4.6774 5.2628 -2.7419 38 1 5.1700 4.0572 -3.9553 39 1 3.6221 3.8739 -3.0957 40 1 7.6291 5.6441 -3.8467 41 1 4.1791 0.2868 -0.7318 42 1 5.3942 -1.0892 -2.3726 43 1 4.9374 -0.8274 -4.7781 44 1 2.3867 0.1742 -6.2543 45 1 2.8807 1.8818 -6.1619 46 1 4.0868 0.6249 -6.5278 47 1 2.0413 2.1780 -3.9009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900452603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:51 Heat of formation + Delta-G solvation = -47.180434 kcal Electronic energy + Delta-G solvation = -30683.126135 eV Core-core repulsion = 26830.508467 eV Total energy + Delta-G solvation = -3852.617669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.34326 -40.04669 -39.68599 -37.51005 -36.53029 -34.84589 -33.58153 -33.46336 -32.30772 -30.64627 -28.42887 -27.97378 -27.49756 -26.46057 -24.71693 -23.85755 -22.94408 -21.88048 -20.49322 -19.96176 -18.86415 -18.36230 -17.68149 -17.40065 -16.97866 -16.46203 -16.17204 -16.13602 -15.84368 -15.66388 -15.31978 -14.95615 -14.43049 -14.39965 -14.35607 -14.23663 -13.95154 -13.79498 -13.60369 -13.32327 -13.20587 -13.07643 -12.98923 -12.91353 -12.82618 -12.67748 -12.53621 -12.43700 -12.21931 -12.14816 -12.01353 -11.81159 -11.79455 -10.93836 -10.83586 -10.26803 -9.81277 -9.58555 -9.51100 -9.33750 -8.27527 -5.88373 0.46320 0.60024 1.33238 1.39553 1.50895 1.54735 2.00782 2.10107 2.28498 2.87398 3.05608 3.12703 3.33552 3.52401 3.80043 3.96428 4.00341 4.06741 4.09578 4.11585 4.27717 4.33606 4.46751 4.48710 4.52564 4.59988 4.68326 4.73895 4.78285 4.80129 4.85095 4.89189 4.96453 4.97965 5.07099 5.15113 5.23745 5.27699 5.38397 5.48771 5.51109 5.51833 5.68140 5.75160 5.78549 6.09472 6.19008 6.22403 6.58604 7.14036 7.27777 7.59294 8.16498 8.74849 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.005756 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.407112 B = 4863.351526 C = 6087.142382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.117 3.883 3 N -0.602 5.602 4 C 0.523 3.477 5 O -0.583 6.583 6 C -0.131 4.131 7 C -0.110 4.110 8 H 0.141 0.859 9 C 0.461 3.539 10 O -0.629 6.629 11 N -0.445 5.445 12 C 0.126 3.874 13 C -0.317 4.317 14 H 0.058 0.942 15 C 0.003 3.997 16 N -0.894 5.894 17 Si 0.972 3.028 18 H -0.281 1.281 19 H -0.266 1.266 20 H -0.280 1.280 21 C 0.193 3.807 22 H 0.140 0.860 23 C -0.101 4.101 24 C -0.097 4.097 25 C -0.135 4.135 26 C -0.120 4.120 27 C -0.091 4.091 28 C -0.107 4.107 29 C -0.100 4.100 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.270 0.730 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.788 -4.591 -8.056 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.004 4.004 3 N -0.334 5.334 4 C 0.313 3.687 5 O -0.464 6.464 6 C -0.171 4.171 7 C -0.132 4.132 8 H 0.158 0.842 9 C 0.250 3.750 10 O -0.516 6.516 11 N -0.162 5.162 12 C -0.017 4.017 13 C -0.446 4.446 14 H 0.076 0.924 15 C -0.199 4.199 16 N -0.533 5.533 17 Si 0.797 3.203 18 H -0.206 1.206 19 H -0.190 1.190 20 H -0.206 1.206 21 C 0.090 3.910 22 H 0.157 0.843 23 C -0.102 4.102 24 C -0.116 4.116 25 C -0.153 4.153 26 C -0.138 4.138 27 C -0.091 4.091 28 C -0.163 4.163 29 C -0.118 4.118 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.167 0.833 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.149 0.851 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.538 -5.025 -7.228 16.996 hybrid contribution 1.914 -0.317 0.391 1.979 sum -12.624 -5.342 -6.837 15.318 Atomic orbital electron populations 1.22040 0.93334 1.03361 1.02380 1.21448 0.95951 0.80660 1.02375 1.48314 1.64549 1.14116 1.06374 1.21076 0.75066 0.88598 0.83990 1.90627 1.56262 1.76714 1.22775 1.22259 1.03606 0.95820 0.95459 1.22445 0.92325 1.00859 0.97525 0.84167 1.20228 0.88991 0.84013 0.81746 1.90519 1.72299 1.45752 1.43027 1.43534 1.08279 1.47186 1.17197 1.21414 0.94641 0.94319 0.91375 1.19334 0.85126 1.09958 1.30210 0.92362 1.25806 1.02180 0.94586 0.97327 1.70038 1.38160 1.09539 1.35570 0.85192 0.78773 0.77877 0.78435 1.20625 1.19046 1.20562 1.20705 0.97853 0.88771 0.83703 0.84314 1.19793 0.98034 0.97637 0.94754 1.20797 0.95917 0.96394 0.98460 1.21128 0.99513 1.00385 0.94260 1.21196 0.98446 0.99242 0.94936 1.20139 0.95951 0.95637 0.97391 1.20783 1.02566 1.03433 0.89530 1.21040 1.00436 0.99619 0.90741 0.90710 0.89830 0.93608 0.89700 0.92615 0.83349 0.90022 0.94206 0.92761 0.91445 0.92010 0.89590 0.87287 0.85105 0.89562 0.90441 0.91782 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 10.24 71.98 0.74 -2.31 16 2 C 0.12 3.16 5.88 86.38 0.51 3.66 16 3 N -0.60 -18.40 2.17 -798.30 -1.73 -20.14 16 4 C 0.52 19.18 7.87 87.90 0.69 19.87 16 5 O -0.58 -25.64 17.60 -3.04 -0.05 -25.69 16 6 C -0.13 -4.20 6.09 30.59 0.19 -4.02 16 7 C -0.11 -3.51 2.51 -10.48 -0.03 -3.54 16 8 H 0.14 3.56 6.58 -2.39 -0.02 3.54 16 9 C 0.46 20.87 4.22 87.66 0.37 21.24 16 10 O -0.63 -34.60 14.52 -3.06 -0.04 -34.64 16 11 N -0.44 -21.16 2.96 -658.89 -1.95 -23.11 16 12 C 0.13 4.99 8.03 127.77 1.03 6.02 16 13 C -0.32 -17.44 9.24 84.04 0.78 -16.66 16 14 H 0.06 3.56 7.44 -2.91 -0.02 3.54 16 15 C 0.00 0.13 5.08 84.92 0.43 0.56 16 16 N -0.89 -45.69 10.75 21.66 0.23 -45.46 16 17 Si 0.97 42.60 29.57 68.60 2.03 44.62 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 C 0.19 5.19 3.42 44.70 0.15 5.34 16 22 H 0.14 2.45 8.06 -2.39 -0.02 2.43 16 23 C -0.10 -3.02 3.12 -19.86 -0.06 -3.08 16 24 C -0.10 -3.56 5.96 22.27 0.13 -3.42 16 25 C -0.13 -4.66 10.05 22.27 0.22 -4.44 16 26 C -0.12 -3.51 9.70 22.27 0.22 -3.29 16 27 C -0.09 -2.31 5.88 -19.87 -0.12 -2.42 16 28 C -0.11 -1.92 10.01 71.24 0.71 -1.21 16 29 C -0.10 -2.47 8.14 22.27 0.18 -2.29 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 2.21 6.20 -2.39 -0.01 2.19 16 34 H 0.06 1.74 7.93 -2.38 -0.02 1.72 16 35 H 0.15 3.31 8.14 -2.38 -0.02 3.29 16 36 H 0.08 3.13 7.61 -2.39 -0.02 3.11 16 37 H 0.04 1.64 7.80 -2.39 -0.02 1.62 16 38 H 0.05 2.37 6.81 -2.38 -0.02 2.36 16 39 H 0.07 2.04 5.01 -2.39 -0.01 2.02 16 40 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 41 H 0.09 3.78 6.56 -2.91 -0.02 3.76 16 42 H 0.11 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 46 H 0.06 1.17 8.09 -2.39 -0.02 1.15 16 47 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -75.12 373.70 5.59 -69.53 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.97 Total: 24.86 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.14 Total: 10.02 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -3.45 Total: -88.71 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -0.10 Total: -60.33 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -75.12 5.59 -69.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900452603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.351 kcal (2) G-P(sol) polarization free energy of solvation -75.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds