Wall clock time and date at job start Tue Mar 31 2020 17:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33000 * 1 3 3 C 1.47101 * 119.99854 * 2 1 4 4 O 1.21618 * 120.00113 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00022 * 180.02562 * 3 2 1 6 6 C 1.46508 * 119.99499 * 359.97438 * 5 3 2 7 7 C 1.53001 * 109.46720 * 269.99873 * 6 5 3 8 8 C 1.46491 * 120.00021 * 180.02562 * 5 3 2 9 9 C 1.50702 * 109.46957 * 269.99631 * 8 5 3 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 5 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 H 1.09001 * 109.46948 * 35.00281 * 12 11 9 14 14 C 1.52999 * 109.47481 * 154.99940 * 12 11 9 15 15 C 1.50698 * 109.47141 * 295.00678 * 14 12 11 16 16 H 1.07994 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99710 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00499 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00045 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47105 * 90.00059 * 19 17 15 21 21 H 1.48498 * 109.47057 * 210.00456 * 19 17 15 22 22 H 1.48503 * 109.46745 * 330.00438 * 19 17 15 23 23 C 1.50700 * 109.47514 * 275.00337 * 12 11 9 24 24 C 1.38235 * 119.99909 * 319.72923 * 23 12 11 25 25 C 1.38235 * 120.00203 * 179.78500 * 24 23 12 26 26 C 1.38243 * 119.99736 * 0.43880 * 25 24 23 27 27 C 1.38244 * 119.99802 * 359.81374 * 26 25 24 28 28 C 1.38234 * 120.00041 * 359.97438 * 27 26 25 29 29 H 1.08001 * 120.00197 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99854 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.99630 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47260 * 29.99912 * 6 5 3 33 33 H 1.08999 * 109.46561 * 150.00345 * 6 5 3 34 34 H 1.09006 * 109.46644 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47286 * 300.00023 * 7 6 5 36 36 H 1.08999 * 109.47218 * 60.00874 * 7 6 5 37 37 H 1.09004 * 109.47166 * 149.99897 * 8 5 3 38 38 H 1.08994 * 109.47507 * 29.99603 * 8 5 3 39 39 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 40 40 H 1.09006 * 109.46798 * 55.00299 * 14 12 11 41 41 H 1.08995 * 109.47322 * 174.99759 * 14 12 11 42 42 H 0.96993 * 120.00753 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.99755 * 359.97438 * 24 23 12 44 44 H 1.07999 * 120.00430 * 180.26737 * 25 24 23 45 45 H 1.07994 * 120.00105 * 179.82908 * 26 25 24 46 46 H 1.07997 * 119.99648 * 180.02562 * 27 26 25 47 47 H 1.07994 * 119.99956 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4574 2.3272 -0.0005 5 7 3.4133 1.2740 -0.0005 6 6 4.1457 0.0052 -0.0005 7 6 4.4013 -0.4361 1.4420 8 6 4.1457 2.5427 0.0000 9 6 4.3964 2.9786 -1.4206 10 8 4.0016 2.2969 -2.3428 11 7 5.0539 4.1291 -1.6664 12 6 5.2923 4.5559 -3.0474 13 1 4.4447 4.2665 -3.6686 14 6 5.4599 6.0761 -3.0897 15 6 4.1663 6.7355 -2.6862 16 1 3.3102 6.1309 -2.4261 17 6 4.0759 8.1108 -2.6492 18 7 5.1183 8.8473 -2.9665 19 14 2.4722 8.9283 -2.1497 20 1 2.4594 9.1361 -0.6794 21 1 2.3503 10.2395 -2.8361 22 1 1.3320 8.0591 -2.5367 23 6 6.5443 3.8979 -3.5676 24 6 7.6496 3.7694 -2.7474 25 6 8.7965 3.1618 -3.2231 26 6 8.8412 2.6908 -4.5221 27 6 7.7376 2.8240 -5.3439 28 6 6.5892 3.4276 -4.8668 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8699 -0.9353 -0.0004 32 1 3.5564 -0.7546 -0.5139 33 1 5.0980 0.1354 -0.5147 34 1 4.9466 -1.3799 1.4420 35 1 4.9905 0.3236 1.9554 36 1 3.4490 -0.5664 1.9562 37 1 5.0983 2.4120 0.5135 38 1 3.5569 3.3020 0.5145 39 1 5.3694 4.6745 -0.9289 40 1 6.2500 6.3739 -2.4002 41 1 5.7250 6.3844 -4.1010 42 1 5.0546 9.8147 -2.9408 43 1 7.6160 4.1411 -1.7339 44 1 9.6585 3.0576 -2.5810 45 1 9.7381 2.2186 -4.8946 46 1 7.7724 2.4556 -6.3586 47 1 5.7270 3.5313 -5.5087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901172041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:04 Heat of formation + Delta-G solvation = -26.397132 kcal Electronic energy + Delta-G solvation = -28389.006952 eV Core-core repulsion = 24537.290515 eV Total energy + Delta-G solvation = -3851.716437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.25599 -39.31432 -38.21015 -36.01120 -35.06022 -33.09315 -32.70376 -31.45109 -30.75691 -30.45667 -28.91276 -27.73184 -24.87049 -23.85956 -22.63502 -22.28388 -21.93404 -20.39726 -19.69827 -18.60246 -17.69263 -17.05561 -16.73790 -16.25552 -16.12263 -15.27413 -14.95412 -14.76603 -14.55354 -14.45785 -14.13177 -14.04916 -13.80308 -13.50892 -13.11891 -13.02881 -12.83030 -12.72217 -12.49068 -12.36876 -12.09305 -11.85067 -11.65552 -11.53310 -11.28915 -11.12150 -10.90854 -10.72112 -10.56528 -10.44484 -9.91068 -9.86845 -9.75121 -9.67118 -9.26457 -8.62405 -8.55322 -8.43150 -8.37588 -8.17554 -6.05726 -4.08848 1.34220 1.76838 1.78850 2.83808 3.12408 3.31847 3.33889 3.38567 3.45538 3.87156 4.24209 4.44691 4.47481 4.70628 4.94550 4.98141 5.14337 5.17588 5.25383 5.26111 5.29368 5.32855 5.38813 5.41304 5.53022 5.54300 5.56840 5.57765 5.89670 5.93355 5.93370 6.11571 6.15115 6.18676 6.35039 6.40097 6.45903 6.60100 6.83129 6.84406 6.93169 7.11677 7.35158 7.39309 7.51568 7.64105 7.91615 8.11680 8.23729 8.29626 8.78683 8.97708 9.56726 11.04728 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.007569 B = 0.004676 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.575379 B = 5986.241207 C = 8839.566443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.209 4.209 3 C 0.548 3.452 4 O -0.536 6.536 5 N -0.590 5.590 6 C 0.108 3.892 7 C -0.172 4.172 8 C 0.095 3.905 9 C 0.496 3.504 10 O -0.542 6.542 11 N -0.699 5.699 12 C 0.185 3.815 13 H 0.085 0.915 14 C 0.025 3.975 15 C -0.519 4.519 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.069 4.069 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.108 4.108 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.401 0.599 40 H 0.024 0.976 41 H 0.034 0.966 42 H 0.261 0.739 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -19.552 7.027 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.230 4.230 3 C 0.338 3.662 4 O -0.414 6.414 5 N -0.322 5.322 6 C -0.015 4.015 7 C -0.230 4.230 8 C -0.032 4.032 9 C 0.280 3.720 10 O -0.419 6.419 11 N -0.349 5.349 12 C 0.081 3.919 13 H 0.103 0.897 14 C -0.013 4.013 15 C -0.558 4.558 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.070 4.070 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.235 0.765 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.380 -19.283 6.341 20.438 hybrid contribution -0.474 0.817 0.502 1.070 sum 1.906 -18.466 6.843 19.786 Atomic orbital electron populations 1.24740 0.95401 1.03222 0.90346 1.22833 0.96298 0.97052 1.06814 1.18667 0.81731 0.89965 0.75828 1.90823 1.67725 1.33322 1.49495 1.47347 1.05499 1.06075 1.73267 1.21583 0.97718 0.85219 0.96976 1.22253 1.02279 1.01655 0.96830 1.21317 0.98590 0.87842 0.95429 1.20953 0.77982 0.81611 0.91485 1.90651 1.50852 1.54451 1.45941 1.45933 1.57148 1.22379 1.09443 1.20228 0.92928 0.97208 0.81570 0.89677 1.19386 0.97861 0.85419 0.98604 1.21152 0.97388 0.91301 1.45914 0.92325 1.24968 0.96358 0.97486 0.95219 1.69957 1.29438 1.05367 1.48462 0.86605 0.84131 0.78795 0.78621 1.20616 1.21254 1.19773 1.20564 0.96384 0.96049 0.94014 1.20904 0.92759 0.99245 0.99781 1.21037 0.97824 0.99568 0.95904 1.20992 0.98253 1.01672 0.94471 1.21042 0.93575 1.00062 0.99376 1.21026 0.98090 0.97977 0.95599 0.86792 0.86823 0.85478 0.90002 0.90134 0.91394 0.92167 0.92263 0.87889 0.86852 0.76500 0.95736 0.94831 0.92911 0.86552 0.86757 0.86870 0.86645 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 14.31 28.92 0.41 -0.55 16 2 C -0.21 -2.33 9.21 -37.80 -0.35 -2.68 16 3 C 0.55 8.39 7.62 -12.66 -0.10 8.29 16 4 O -0.54 -10.53 15.80 5.26 0.08 -10.44 16 5 N -0.59 -7.87 1.96 -176.46 -0.35 -8.22 16 6 C 0.11 1.03 5.84 -4.04 -0.02 1.01 16 7 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 8 C 0.09 1.31 5.89 -5.20 -0.03 1.28 16 9 C 0.50 8.91 7.85 -10.98 -0.09 8.83 16 10 O -0.54 -11.65 16.09 5.55 0.09 -11.56 16 11 N -0.70 -12.71 4.04 -54.93 -0.22 -12.93 16 12 C 0.18 3.84 2.11 -69.08 -0.15 3.69 16 13 H 0.09 1.98 7.44 -51.93 -0.39 1.60 16 14 C 0.02 0.60 4.49 -27.88 -0.13 0.47 16 15 C -0.52 -14.14 8.84 -34.44 -0.30 -14.45 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 19 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.07 -1.28 4.91 -104.62 -0.51 -1.79 16 24 C -0.11 -1.78 9.32 -39.58 -0.37 -2.15 16 25 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 26 C -0.14 -1.90 10.05 -39.58 -0.40 -2.29 16 27 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 28 C -0.11 -1.90 9.67 -39.58 -0.38 -2.28 16 29 H 0.11 1.31 7.49 -52.49 -0.39 0.92 16 30 H 0.11 0.72 8.06 -52.49 -0.42 0.29 16 31 H 0.13 1.03 6.22 -52.49 -0.33 0.70 16 32 H 0.08 0.70 6.09 -51.93 -0.32 0.39 16 33 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 1.03 8.07 -51.93 -0.42 0.61 16 38 H 0.11 1.65 7.42 -51.93 -0.39 1.27 16 39 H 0.40 6.56 8.60 -40.82 -0.35 6.21 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.12 1.76 7.73 -52.48 -0.41 1.36 16 44 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -35.55 402.13 -8.71 -44.27 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.17 Total: 7.57 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.92 Total: -6.27 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.17 Total: -46.41 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.17 Total: -22.01 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.55 -8.71 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901172041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.869 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds