Wall clock time and date at job start Tue Mar 31 2020 17:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33000 * 1 3 3 C 1.47101 * 119.99854 * 2 1 4 4 O 1.21618 * 120.00113 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00022 * 180.02562 * 3 2 1 6 6 C 1.46508 * 119.99499 * 359.97438 * 5 3 2 7 7 C 1.53001 * 109.46720 * 269.99873 * 6 5 3 8 8 C 1.46491 * 120.00021 * 180.02562 * 5 3 2 9 9 C 1.50702 * 109.46957 * 269.99631 * 8 5 3 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 5 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 H 1.09001 * 109.46948 * 35.00281 * 12 11 9 14 14 C 1.52999 * 109.47481 * 154.99940 * 12 11 9 15 15 C 1.50698 * 109.47141 * 295.00678 * 14 12 11 16 16 H 1.07994 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99710 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00499 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00045 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47105 * 90.00059 * 19 17 15 21 21 H 1.48498 * 109.47057 * 210.00456 * 19 17 15 22 22 H 1.48503 * 109.46745 * 330.00438 * 19 17 15 23 23 C 1.50700 * 109.47514 * 275.00337 * 12 11 9 24 24 C 1.38235 * 119.99909 * 319.72923 * 23 12 11 25 25 C 1.38235 * 120.00203 * 179.78500 * 24 23 12 26 26 C 1.38243 * 119.99736 * 0.43880 * 25 24 23 27 27 C 1.38244 * 119.99802 * 359.81374 * 26 25 24 28 28 C 1.38234 * 120.00041 * 359.97438 * 27 26 25 29 29 H 1.08001 * 120.00197 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99854 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.99630 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47260 * 29.99912 * 6 5 3 33 33 H 1.08999 * 109.46561 * 150.00345 * 6 5 3 34 34 H 1.09006 * 109.46644 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47286 * 300.00023 * 7 6 5 36 36 H 1.08999 * 109.47218 * 60.00874 * 7 6 5 37 37 H 1.09004 * 109.47166 * 149.99897 * 8 5 3 38 38 H 1.08994 * 109.47507 * 29.99603 * 8 5 3 39 39 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 40 40 H 1.09006 * 109.46798 * 55.00299 * 14 12 11 41 41 H 1.08995 * 109.47322 * 174.99759 * 14 12 11 42 42 H 0.96993 * 120.00753 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.99755 * 359.97438 * 24 23 12 44 44 H 1.07999 * 120.00430 * 180.26737 * 25 24 23 45 45 H 1.07994 * 120.00105 * 179.82908 * 26 25 24 46 46 H 1.07997 * 119.99648 * 180.02562 * 27 26 25 47 47 H 1.07994 * 119.99956 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4574 2.3272 -0.0005 5 7 3.4133 1.2740 -0.0005 6 6 4.1457 0.0052 -0.0005 7 6 4.4013 -0.4361 1.4420 8 6 4.1457 2.5427 0.0000 9 6 4.3964 2.9786 -1.4206 10 8 4.0016 2.2969 -2.3428 11 7 5.0539 4.1291 -1.6664 12 6 5.2923 4.5559 -3.0474 13 1 4.4447 4.2665 -3.6686 14 6 5.4599 6.0761 -3.0897 15 6 4.1663 6.7355 -2.6862 16 1 3.3102 6.1309 -2.4261 17 6 4.0759 8.1108 -2.6492 18 7 5.1183 8.8473 -2.9665 19 14 2.4722 8.9283 -2.1497 20 1 2.4594 9.1361 -0.6794 21 1 2.3503 10.2395 -2.8361 22 1 1.3320 8.0591 -2.5367 23 6 6.5443 3.8979 -3.5676 24 6 7.6496 3.7694 -2.7474 25 6 8.7965 3.1618 -3.2231 26 6 8.8412 2.6908 -4.5221 27 6 7.7376 2.8240 -5.3439 28 6 6.5892 3.4276 -4.8668 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8699 -0.9353 -0.0004 32 1 3.5564 -0.7546 -0.5139 33 1 5.0980 0.1354 -0.5147 34 1 4.9466 -1.3799 1.4420 35 1 4.9905 0.3236 1.9554 36 1 3.4490 -0.5664 1.9562 37 1 5.0983 2.4120 0.5135 38 1 3.5569 3.3020 0.5145 39 1 5.3694 4.6745 -0.9289 40 1 6.2500 6.3739 -2.4002 41 1 5.7250 6.3844 -4.1010 42 1 5.0546 9.8147 -2.9408 43 1 7.6160 4.1411 -1.7339 44 1 9.6585 3.0576 -2.5810 45 1 9.7381 2.2186 -4.8946 46 1 7.7724 2.4556 -6.3586 47 1 5.7270 3.5313 -5.5087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901172041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:03 Heat of formation + Delta-G solvation = -48.263789 kcal Electronic energy + Delta-G solvation = -28389.955162 eV Core-core repulsion = 24537.290515 eV Total energy + Delta-G solvation = -3852.664646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50269 -40.62463 -39.54662 -37.16909 -36.62293 -34.76087 -33.99597 -32.80030 -31.76450 -31.60357 -30.58621 -28.98828 -26.65008 -24.73642 -23.85087 -23.63531 -23.26393 -21.76552 -21.18361 -19.60965 -18.78425 -18.65937 -18.18725 -17.78935 -17.36564 -16.71764 -16.49166 -16.29418 -15.89033 -15.73194 -15.34573 -15.08963 -14.72154 -14.65053 -14.46927 -14.32087 -14.19072 -14.13269 -13.69796 -13.55041 -13.46731 -13.10702 -12.99589 -12.88550 -12.67745 -12.50353 -12.45852 -12.15754 -12.01247 -11.88426 -11.62410 -11.37318 -11.15400 -10.98005 -10.77330 -10.62138 -9.99953 -9.76047 -9.75082 -9.50374 -8.24643 -6.34249 0.43353 0.51283 0.56016 1.34457 1.36021 1.47405 1.67275 1.80652 2.27923 2.36252 2.53369 2.97960 3.09381 3.60196 3.82930 3.98313 4.02078 4.03454 4.16041 4.21317 4.22609 4.32280 4.33247 4.42624 4.44331 4.61326 4.64588 4.73466 4.75736 4.78183 4.87709 4.98488 5.11851 5.20181 5.25251 5.28449 5.34079 5.39598 5.40845 5.51788 5.60070 5.61144 5.64349 5.74533 5.90324 6.13864 6.19493 6.34361 6.66774 6.77903 7.11222 7.32750 7.35346 8.85901 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.007569 B = 0.004676 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.575379 B = 5986.241207 C = 8839.566443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.225 4.225 3 C 0.532 3.468 4 O -0.597 6.597 5 N -0.589 5.589 6 C 0.102 3.898 7 C -0.162 4.162 8 C 0.100 3.900 9 C 0.493 3.507 10 O -0.581 6.581 11 N -0.695 5.695 12 C 0.202 3.798 13 H 0.046 0.954 14 C 0.040 3.960 15 C -0.531 4.531 16 H 0.044 0.956 17 C 0.017 3.983 18 N -0.922 5.922 19 Si 0.951 3.049 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.280 1.280 23 C -0.095 4.095 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.136 4.136 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.149 0.851 38 H 0.104 0.896 39 H 0.409 0.591 40 H 0.017 0.983 41 H 0.003 0.997 42 H 0.265 0.735 43 H 0.124 0.876 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.142 0.858 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.520 -22.062 8.327 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.245 4.245 3 C 0.324 3.676 4 O -0.479 6.479 5 N -0.319 5.319 6 C -0.020 4.020 7 C -0.220 4.220 8 C -0.027 4.027 9 C 0.279 3.721 10 O -0.461 6.461 11 N -0.346 5.346 12 C 0.096 3.904 13 H 0.065 0.935 14 C 0.002 3.998 15 C -0.569 4.569 16 H 0.062 0.938 17 C -0.182 4.182 18 N -0.562 5.562 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.206 1.206 23 C -0.097 4.097 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.154 4.154 29 H 0.107 0.893 30 H 0.175 0.825 31 H 0.180 0.820 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.166 0.834 38 H 0.122 0.878 39 H 0.245 0.755 40 H 0.035 0.965 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.168 0.832 45 H 0.170 0.830 46 H 0.160 0.840 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.013 -21.820 7.668 23.474 hybrid contribution -0.937 1.552 0.029 1.813 sum 3.077 -20.268 7.696 21.897 Atomic orbital electron populations 1.25025 0.95145 1.04090 0.87922 1.22974 0.96703 0.96262 1.08560 1.19535 0.82437 0.90812 0.74779 1.90782 1.68977 1.35603 1.52578 1.47588 1.05343 1.07068 1.71944 1.21869 0.97276 0.83705 0.99101 1.22178 1.02631 1.02639 0.94566 1.21355 1.00615 0.88330 0.92389 1.21722 0.76665 0.80782 0.92959 1.90621 1.52293 1.55578 1.47653 1.45844 1.57318 1.22779 1.08617 1.19661 0.93194 0.94910 0.82616 0.93530 1.19118 0.96282 0.88102 0.96284 1.21349 0.97973 0.91696 1.45872 0.93763 1.25681 0.99349 0.98041 0.95176 1.70043 1.31130 1.05757 1.49237 0.85668 0.80002 0.77798 0.78889 1.19332 1.20300 1.20577 1.20379 0.96097 0.98102 0.95076 1.21076 0.92907 0.99732 0.99975 1.21454 0.97842 0.97916 0.96657 1.21480 0.98912 1.00212 0.93970 1.21363 0.92820 0.99049 1.00882 1.21140 0.99206 0.99669 0.95429 0.89296 0.82495 0.81972 0.88867 0.90331 0.89071 0.92193 0.92210 0.83394 0.87810 0.75491 0.96461 0.97875 0.92565 0.85766 0.83236 0.82993 0.84044 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 14.31 66.65 0.95 -0.58 16 2 C -0.22 -4.72 9.21 23.43 0.22 -4.51 16 3 C 0.53 16.55 7.62 86.57 0.66 17.21 16 4 O -0.60 -24.74 15.80 -4.09 -0.06 -24.80 16 5 N -0.59 -15.50 1.96 -830.43 -1.63 -17.13 16 6 C 0.10 1.75 5.84 86.38 0.50 2.25 16 7 C -0.16 -1.79 10.24 71.98 0.74 -1.05 16 8 C 0.10 2.77 5.89 85.64 0.50 3.28 16 9 C 0.49 18.39 7.85 87.66 0.69 19.08 16 10 O -0.58 -26.25 16.09 -3.04 -0.05 -26.30 16 11 N -0.70 -26.51 4.04 -446.09 -1.80 -28.31 16 12 C 0.20 8.94 2.11 44.25 0.09 9.04 16 13 H 0.05 2.39 7.44 -2.39 -0.02 2.37 16 14 C 0.04 2.05 4.49 29.85 0.13 2.18 16 15 C -0.53 -30.30 8.84 25.60 0.23 -30.08 16 16 H 0.04 2.61 7.74 -2.91 -0.02 2.58 16 17 C 0.02 0.95 5.46 84.65 0.46 1.42 16 18 N -0.92 -54.85 13.29 21.45 0.28 -54.57 16 19 Si 0.95 45.77 29.54 68.60 2.03 47.80 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 23 C -0.10 -3.67 4.91 -19.87 -0.10 -3.77 16 24 C -0.12 -3.82 9.32 22.27 0.21 -3.61 16 25 C -0.12 -3.13 10.05 22.27 0.22 -2.90 16 26 C -0.13 -3.15 10.05 22.27 0.22 -2.92 16 27 C -0.12 -3.53 10.05 22.27 0.22 -3.30 16 28 C -0.14 -4.95 9.67 22.27 0.22 -4.73 16 29 H 0.09 2.10 7.49 -2.91 -0.02 2.07 16 30 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.16 2.14 6.22 -2.91 -0.02 2.12 16 32 H 0.09 1.38 6.09 -2.39 -0.01 1.37 16 33 H 0.08 1.40 8.07 -2.39 -0.02 1.38 16 34 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.15 2.68 8.07 -2.38 -0.02 2.66 16 38 H 0.10 3.13 7.42 -2.39 -0.02 3.12 16 39 H 0.41 13.91 8.60 -92.71 -0.80 13.11 16 40 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.12 3.67 7.73 -2.91 -0.02 3.65 16 44 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 45 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 46 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 47 H 0.11 3.96 8.04 -2.91 -0.02 3.93 16 Total: -1.00 -82.90 402.13 5.11 -77.79 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.16 Total: 28.52 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 6.18 Total: -3.00 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -3.15 Total: -100.01 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -0.11 Total: -51.10 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -82.90 5.11 -77.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901172041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.529 kcal (2) G-P(sol) polarization free energy of solvation -82.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds