Wall clock time and date at job start Tue Mar 31 2020 17:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32997 * 1 3 3 C 1.47105 * 120.00068 * 2 1 4 4 O 1.21616 * 119.99758 * 0.02562 * 3 2 1 5 5 N 1.34768 * 120.00238 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00169 * 0.02562 * 5 3 2 7 7 C 1.53005 * 109.47035 * 269.99957 * 6 5 3 8 8 C 1.46505 * 120.00005 * 180.02562 * 5 3 2 9 9 C 1.50697 * 109.47018 * 269.99891 * 8 5 3 10 10 O 1.21290 * 120.00067 * 359.97438 * 9 8 5 11 11 N 1.34771 * 120.00181 * 180.02562 * 9 8 5 12 12 C 1.46500 * 120.00556 * 180.02562 * 11 9 8 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.08002 * 120.00087 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99696 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00087 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47094 * 29.99905 * 6 5 3 33 33 H 1.08999 * 109.47162 * 149.99581 * 6 5 3 34 34 H 1.09001 * 109.46774 * 60.00101 * 7 6 5 35 35 H 1.09005 * 109.46741 * 179.97438 * 7 6 5 36 36 H 1.08992 * 109.47179 * 299.99469 * 7 6 5 37 37 H 1.09003 * 109.47021 * 150.00150 * 8 5 3 38 38 H 1.08995 * 109.47163 * 30.00164 * 8 5 3 39 39 H 0.97002 * 120.00072 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 41 41 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 44 44 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 45 45 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 46 46 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 47 47 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2740 0.0000 4 8 1.4574 2.3272 0.0005 5 7 3.4132 1.2740 -0.0005 6 6 4.1458 0.0053 -0.0017 7 6 4.4014 -0.4373 1.4405 8 6 4.1457 2.5428 0.0000 9 6 4.3963 2.9787 -1.4206 10 8 4.0023 2.2965 -2.3428 11 7 5.0591 4.1261 -1.6664 12 6 5.3023 4.5503 -3.0474 13 1 5.4756 3.6736 -3.6715 14 6 6.5319 5.4596 -3.0927 15 6 7.7541 4.6719 -2.6964 16 1 7.6630 3.6271 -2.4385 17 6 8.9895 5.2835 -2.6692 18 7 9.1005 6.5557 -2.9836 19 14 10.5055 4.3052 -2.1854 20 1 10.1148 2.9054 -1.8804 21 1 11.4789 4.3138 -3.3070 22 1 11.1282 4.9185 -0.9849 23 6 4.1018 5.3030 -3.5606 24 6 3.4319 6.1833 -2.7317 25 6 2.3333 6.8770 -3.2037 26 6 1.8992 6.6834 -4.5019 27 6 2.5660 5.7991 -5.3290 28 6 3.6671 5.1087 -4.8583 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8700 -0.9353 -0.0004 32 1 3.5565 -0.7541 -0.5158 33 1 5.0979 0.1360 -0.5158 34 1 3.4491 -0.5680 1.9546 35 1 4.9460 -1.3815 1.4396 36 1 4.9906 0.3219 1.9545 37 1 5.0983 2.4121 0.5134 38 1 3.5568 3.3020 0.5146 39 1 5.3746 4.6716 -0.9289 40 1 6.3951 6.2905 -2.4006 41 1 6.6609 5.8462 -4.1035 42 1 9.9697 6.9860 -2.9641 43 1 3.7685 6.3314 -1.7163 44 1 1.8126 7.5682 -2.5576 45 1 1.0393 7.2233 -4.8698 46 1 2.2271 5.6482 -6.3433 47 1 4.1881 4.4179 -5.5046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901172042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:08 Heat of formation + Delta-G solvation = -27.242939 kcal Electronic energy + Delta-G solvation = -28427.767179 eV Core-core repulsion = 24576.014065 eV Total energy + Delta-G solvation = -3851.753114 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.26962 -39.28435 -38.17961 -36.01166 -35.05252 -33.12195 -32.74337 -31.43222 -30.72701 -30.38237 -28.89949 -27.74528 -24.87996 -23.85189 -22.63925 -22.23533 -21.89593 -20.39624 -19.67741 -18.62240 -17.72403 -17.00600 -16.72585 -16.30079 -16.11314 -15.29882 -14.89015 -14.78975 -14.55344 -14.45738 -14.13995 -14.02347 -13.78202 -13.52197 -13.08514 -12.99768 -12.83741 -12.64043 -12.49097 -12.35228 -12.08959 -11.86089 -11.66681 -11.53822 -11.26191 -11.12665 -10.91731 -10.71728 -10.58499 -10.44185 -9.94329 -9.90289 -9.77861 -9.67605 -9.29791 -8.63842 -8.51000 -8.43218 -8.37602 -8.11233 -6.10580 -4.14102 1.30753 1.84780 1.87629 2.83243 3.13107 3.23827 3.30442 3.32627 3.35609 3.87720 4.30515 4.38512 4.46096 4.73318 4.93925 5.01213 5.18401 5.21922 5.26259 5.29768 5.33357 5.35364 5.38816 5.44820 5.51462 5.58255 5.59994 5.60871 5.96789 5.97191 5.99775 6.09103 6.12794 6.20313 6.39133 6.42556 6.49931 6.60954 6.91055 6.91837 6.94298 7.16052 7.33813 7.47272 7.49652 7.63696 7.86131 8.10480 8.20716 8.25311 8.78639 8.91887 9.50767 11.00021 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008362 B = 0.004482 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.525431 B = 6245.596514 C = 9017.902126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.209 4.209 3 C 0.549 3.451 4 O -0.542 6.542 5 N -0.588 5.588 6 C 0.106 3.894 7 C -0.172 4.172 8 C 0.095 3.905 9 C 0.496 3.504 10 O -0.542 6.542 11 N -0.699 5.699 12 C 0.186 3.814 13 H 0.085 0.915 14 C 0.023 3.977 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.072 4.072 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.109 4.109 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.401 0.599 40 H 0.025 0.975 41 H 0.034 0.966 42 H 0.261 0.739 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.018 -10.321 7.096 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.229 4.229 3 C 0.340 3.660 4 O -0.420 6.420 5 N -0.320 5.320 6 C -0.017 4.017 7 C -0.230 4.230 8 C -0.032 4.032 9 C 0.280 3.720 10 O -0.419 6.419 11 N -0.349 5.349 12 C 0.082 3.918 13 H 0.103 0.897 14 C -0.014 4.014 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.073 4.073 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.153 4.153 27 C -0.142 4.142 28 C -0.127 4.127 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.235 0.765 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.454 -10.117 6.413 18.014 hybrid contribution 1.262 -0.192 0.489 1.367 sum -12.191 -10.309 6.902 17.394 Atomic orbital electron populations 1.24721 0.95380 1.03160 0.90533 1.22851 0.96306 0.97144 1.06625 1.18643 0.81728 0.89922 0.75720 1.90784 1.67815 1.33379 1.50021 1.47355 1.05468 1.06213 1.72930 1.21619 0.97886 0.85068 0.97102 1.22248 1.02204 1.01790 0.96758 1.21328 0.98719 0.87704 0.95468 1.20940 0.78074 0.81533 0.91467 1.90654 1.51028 1.54304 1.45939 1.45940 1.56358 1.23150 1.09481 1.20214 0.92366 0.97693 0.81505 0.89705 1.19394 0.89311 0.94016 0.98659 1.21164 0.91726 0.96687 1.46158 0.92385 1.24999 0.99027 0.94864 0.95302 1.69973 1.24370 1.10262 1.48386 0.86545 0.83104 0.80217 0.78179 1.19782 1.21002 1.21026 1.20533 0.96525 0.96200 0.94018 1.20893 0.95580 0.96304 0.99581 1.21041 0.97295 0.99969 0.95877 1.20986 1.00236 0.99595 0.94471 1.21022 0.96351 0.97437 0.99347 1.20990 0.96524 0.99591 0.95644 0.86875 0.86825 0.85427 0.89982 0.89857 0.92354 0.91316 0.92075 0.87499 0.87188 0.76492 0.95694 0.94797 0.92913 0.86604 0.86739 0.86870 0.86678 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 14.31 28.91 0.41 -0.51 16 2 C -0.21 -2.25 9.21 -37.80 -0.35 -2.60 16 3 C 0.55 8.11 7.62 -12.67 -0.10 8.01 16 4 O -0.54 -9.97 15.80 5.26 0.08 -9.89 16 5 N -0.59 -7.84 1.96 -176.45 -0.35 -8.19 16 6 C 0.11 1.07 5.84 -4.04 -0.02 1.05 16 7 C -0.17 -1.31 10.24 37.16 0.38 -0.93 16 8 C 0.09 1.31 5.89 -5.19 -0.03 1.28 16 9 C 0.50 8.92 7.85 -10.99 -0.09 8.83 16 10 O -0.54 -11.67 16.09 5.55 0.09 -11.58 16 11 N -0.70 -12.71 4.02 -54.93 -0.22 -12.93 16 12 C 0.19 3.87 2.12 -69.08 -0.15 3.72 16 13 H 0.08 1.93 7.44 -51.92 -0.39 1.54 16 14 C 0.02 0.56 4.50 -27.88 -0.13 0.44 16 15 C -0.52 -13.55 8.84 -34.44 -0.30 -13.86 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 19 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.07 -1.40 4.91 -104.63 -0.51 -1.91 16 24 C -0.11 -1.90 9.33 -39.58 -0.37 -2.27 16 25 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 26 C -0.13 -2.09 10.05 -39.58 -0.40 -2.48 16 27 C -0.12 -2.00 10.05 -39.59 -0.40 -2.40 16 28 C -0.11 -2.01 9.67 -39.59 -0.38 -2.40 16 29 H 0.11 1.21 7.49 -52.49 -0.39 0.81 16 30 H 0.11 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.13 1.02 6.23 -52.49 -0.33 0.69 16 32 H 0.08 0.73 6.10 -51.93 -0.32 0.42 16 33 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.11 1.17 8.07 -51.93 -0.42 0.75 16 38 H 0.11 1.49 7.42 -51.93 -0.39 1.11 16 39 H 0.40 6.55 8.60 -40.82 -0.35 6.20 16 40 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.12 1.96 7.71 -52.49 -0.40 1.56 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.12 2.09 8.04 -52.48 -0.42 1.67 16 LS Contribution 402.10 15.07 6.06 6.06 Total: -1.00 -34.59 402.10 -8.71 -43.30 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.17 Total: 9.17 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.92 Total: -6.91 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.17 Total: -45.79 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.17 Total: -21.46 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.59 -8.71 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901172042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.057 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds