Wall clock time and date at job start Tue Mar 31 2020 17:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32997 * 1 3 3 C 1.47105 * 120.00068 * 2 1 4 4 O 1.21616 * 119.99758 * 0.02562 * 3 2 1 5 5 N 1.34768 * 120.00238 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00169 * 0.02562 * 5 3 2 7 7 C 1.53005 * 109.47035 * 269.99957 * 6 5 3 8 8 C 1.46505 * 120.00005 * 180.02562 * 5 3 2 9 9 C 1.50697 * 109.47018 * 269.99891 * 8 5 3 10 10 O 1.21290 * 120.00067 * 359.97438 * 9 8 5 11 11 N 1.34771 * 120.00181 * 180.02562 * 9 8 5 12 12 C 1.46500 * 120.00556 * 180.02562 * 11 9 8 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.08002 * 120.00087 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99696 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00087 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47094 * 29.99905 * 6 5 3 33 33 H 1.08999 * 109.47162 * 149.99581 * 6 5 3 34 34 H 1.09001 * 109.46774 * 60.00101 * 7 6 5 35 35 H 1.09005 * 109.46741 * 179.97438 * 7 6 5 36 36 H 1.08992 * 109.47179 * 299.99469 * 7 6 5 37 37 H 1.09003 * 109.47021 * 150.00150 * 8 5 3 38 38 H 1.08995 * 109.47163 * 30.00164 * 8 5 3 39 39 H 0.97002 * 120.00072 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 41 41 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 44 44 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 45 45 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 46 46 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 47 47 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2740 0.0000 4 8 1.4574 2.3272 0.0005 5 7 3.4132 1.2740 -0.0005 6 6 4.1458 0.0053 -0.0017 7 6 4.4014 -0.4373 1.4405 8 6 4.1457 2.5428 0.0000 9 6 4.3963 2.9787 -1.4206 10 8 4.0023 2.2965 -2.3428 11 7 5.0591 4.1261 -1.6664 12 6 5.3023 4.5503 -3.0474 13 1 5.4756 3.6736 -3.6715 14 6 6.5319 5.4596 -3.0927 15 6 7.7541 4.6719 -2.6964 16 1 7.6630 3.6271 -2.4385 17 6 8.9895 5.2835 -2.6692 18 7 9.1005 6.5557 -2.9836 19 14 10.5055 4.3052 -2.1854 20 1 10.1148 2.9054 -1.8804 21 1 11.4789 4.3138 -3.3070 22 1 11.1282 4.9185 -0.9849 23 6 4.1018 5.3030 -3.5606 24 6 3.4319 6.1833 -2.7317 25 6 2.3333 6.8770 -3.2037 26 6 1.8992 6.6834 -4.5019 27 6 2.5660 5.7991 -5.3290 28 6 3.6671 5.1087 -4.8583 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8700 -0.9353 -0.0004 32 1 3.5565 -0.7541 -0.5158 33 1 5.0979 0.1360 -0.5158 34 1 3.4491 -0.5680 1.9546 35 1 4.9460 -1.3815 1.4396 36 1 4.9906 0.3219 1.9545 37 1 5.0983 2.4121 0.5134 38 1 3.5568 3.3020 0.5146 39 1 5.3746 4.6716 -0.9289 40 1 6.3951 6.2905 -2.4006 41 1 6.6609 5.8462 -4.1035 42 1 9.9697 6.9860 -2.9641 43 1 3.7685 6.3314 -1.7163 44 1 1.8126 7.5682 -2.5576 45 1 1.0393 7.2233 -4.8698 46 1 2.2271 5.6482 -6.3433 47 1 4.1881 4.4179 -5.5046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901172042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:07 Heat of formation + Delta-G solvation = -47.755153 kcal Electronic energy + Delta-G solvation = -28428.656656 eV Core-core repulsion = 24576.014065 eV Total energy + Delta-G solvation = -3852.642590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49800 -40.62601 -39.55668 -37.15611 -36.61485 -34.72678 -33.98080 -32.80555 -31.79261 -31.62611 -30.58827 -28.97980 -26.63630 -24.73084 -23.85307 -23.66496 -23.28228 -21.77500 -21.18456 -19.60229 -18.82644 -18.56041 -18.18365 -17.78382 -17.41928 -16.72020 -16.46587 -16.27671 -15.89162 -15.74979 -15.33069 -15.10917 -14.72896 -14.63838 -14.44473 -14.35199 -14.23063 -14.10265 -13.70429 -13.55759 -13.46419 -13.10860 -12.96640 -12.87351 -12.62988 -12.48497 -12.44821 -12.15473 -12.02093 -11.91448 -11.61357 -11.31759 -11.14715 -10.96537 -10.75436 -10.59426 -10.00795 -9.79417 -9.74862 -9.52846 -8.19826 -6.30564 0.44528 0.48536 0.52226 1.39750 1.42214 1.53635 1.69461 1.79704 2.28576 2.40551 2.53460 2.94775 3.14702 3.60634 3.83511 3.96841 3.99371 4.01587 4.16489 4.18217 4.23573 4.27795 4.31280 4.41433 4.44106 4.59881 4.62168 4.72797 4.75085 4.75619 4.86921 4.96903 5.09423 5.15890 5.26245 5.29781 5.33209 5.39376 5.42169 5.52222 5.57205 5.57909 5.60314 5.77492 5.88179 6.13386 6.18922 6.35032 6.66935 6.82201 7.11146 7.33098 7.38742 8.91328 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008362 B = 0.004482 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.525431 B = 6245.596514 C = 9017.902126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.228 4.228 3 C 0.535 3.465 4 O -0.592 6.592 5 N -0.590 5.590 6 C 0.100 3.900 7 C -0.162 4.162 8 C 0.100 3.900 9 C 0.493 3.507 10 O -0.581 6.581 11 N -0.696 5.696 12 C 0.203 3.797 13 H 0.057 0.943 14 C 0.039 3.961 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.960 3.040 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.276 1.276 23 C -0.099 4.099 24 C -0.122 4.122 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.134 4.134 29 H 0.093 0.907 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.409 0.591 40 H 0.011 0.989 41 H 0.001 0.999 42 H 0.264 0.736 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.152 0.848 46 H 0.145 0.855 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.012 -11.859 8.233 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.248 4.248 3 C 0.328 3.672 4 O -0.475 6.475 5 N -0.320 5.320 6 C -0.021 4.021 7 C -0.220 4.220 8 C -0.027 4.027 9 C 0.279 3.721 10 O -0.461 6.461 11 N -0.346 5.346 12 C 0.098 3.902 13 H 0.075 0.925 14 C 0.001 3.999 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.785 3.215 20 H -0.188 1.188 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.100 4.100 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.153 4.153 29 H 0.111 0.889 30 H 0.173 0.827 31 H 0.176 0.824 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.245 0.755 40 H 0.029 0.971 41 H 0.019 0.981 42 H 0.072 0.928 43 H 0.137 0.863 44 H 0.162 0.838 45 H 0.169 0.831 46 H 0.163 0.837 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.428 -11.683 7.578 20.053 hybrid contribution 1.480 0.315 0.068 1.515 sum -12.948 -11.368 7.646 18.851 Atomic orbital electron populations 1.25015 0.94991 1.04168 0.87743 1.22969 0.96801 0.96304 1.08722 1.19443 0.82170 0.90841 0.74733 1.90745 1.68796 1.35326 1.52600 1.47576 1.05489 1.06910 1.71982 1.21855 0.97217 0.83995 0.99065 1.22171 1.02697 1.02505 0.94627 1.21350 1.00420 0.88504 0.92444 1.21703 0.76837 0.80592 0.92942 1.90624 1.52518 1.55339 1.47618 1.45852 1.56464 1.23623 1.08654 1.19692 0.91985 0.95893 0.82651 0.92476 1.19125 0.90658 0.93947 0.96139 1.21415 0.92624 0.96695 1.45772 0.92492 1.25830 1.02164 0.95767 0.95209 1.70094 1.25229 1.11919 1.49539 0.85472 0.79041 0.79075 0.77874 1.18847 1.21033 1.20115 1.20497 0.96866 0.97560 0.95070 1.21065 0.96549 0.96696 0.99742 1.21446 0.96467 0.99702 0.96856 1.21468 1.00719 0.98751 0.93872 1.21394 0.95198 0.96673 1.00922 1.21177 0.97994 1.00660 0.95461 0.88897 0.82696 0.82395 0.88659 0.90870 0.91834 0.89319 0.92406 0.84324 0.86941 0.75513 0.97069 0.98051 0.92755 0.86311 0.83811 0.83062 0.83708 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 14.31 66.65 0.95 -0.38 16 2 C -0.23 -4.53 9.21 23.43 0.22 -4.31 16 3 C 0.54 15.72 7.62 86.57 0.66 16.38 16 4 O -0.59 -22.36 15.80 -4.08 -0.06 -22.43 16 5 N -0.59 -15.43 1.96 -830.42 -1.63 -17.05 16 6 C 0.10 1.88 5.84 86.38 0.50 2.39 16 7 C -0.16 -2.07 10.24 71.98 0.74 -1.34 16 8 C 0.10 2.75 5.89 85.63 0.50 3.26 16 9 C 0.49 18.29 7.85 87.66 0.69 18.97 16 10 O -0.58 -25.99 16.09 -3.06 -0.05 -26.04 16 11 N -0.70 -26.38 4.02 -446.09 -1.79 -28.17 16 12 C 0.20 8.94 2.12 44.24 0.09 9.04 16 13 H 0.06 2.80 7.44 -2.38 -0.02 2.78 16 14 C 0.04 1.97 4.50 29.85 0.13 2.10 16 15 C -0.53 -28.36 8.84 25.60 0.23 -28.13 16 16 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 17 C 0.01 0.48 5.46 84.66 0.46 0.94 16 18 N -0.93 -54.14 13.29 21.45 0.28 -53.86 16 19 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 C -0.10 -4.05 4.91 -19.87 -0.10 -4.15 16 24 C -0.12 -4.51 9.33 22.27 0.21 -4.30 16 25 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 26 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 27 C -0.12 -3.90 10.05 22.27 0.22 -3.68 16 28 C -0.13 -5.15 9.67 22.27 0.22 -4.94 16 29 H 0.09 1.94 7.49 -2.91 -0.02 1.92 16 30 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.16 2.06 6.23 -2.91 -0.02 2.04 16 32 H 0.10 1.52 6.10 -2.39 -0.01 1.50 16 33 H 0.07 1.53 8.07 -2.39 -0.02 1.51 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.14 2.88 8.07 -2.39 -0.02 2.87 16 38 H 0.11 3.08 7.42 -2.39 -0.02 3.07 16 39 H 0.41 13.89 8.60 -92.71 -0.80 13.09 16 40 H 0.01 0.58 8.14 -2.38 -0.02 0.57 16 41 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 43 H 0.12 4.15 7.71 -2.91 -0.02 4.12 16 44 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 45 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 46 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 47 H 0.11 4.28 8.04 -2.91 -0.02 4.26 16 Total: -1.00 -78.66 402.10 5.12 -73.55 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.16 Total: 34.74 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 6.18 Total: -5.40 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -3.14 Total: -99.08 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.11 Total: -48.47 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -78.66 5.12 -73.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901172042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.792 kcal (2) G-P(sol) polarization free energy of solvation -78.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds