Wall clock time and date at job start Tue Mar 31 2020 15:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46963 * 2 1 4 4 C 1.52999 * 109.47413 * 120.00022 * 2 1 3 5 5 H 1.08992 * 109.47259 * 295.77496 * 4 2 1 6 6 C 1.50699 * 109.47114 * 175.77103 * 4 2 1 7 7 O 1.21284 * 119.99573 * 261.49166 * 6 4 2 8 8 N 1.34770 * 120.00002 * 81.50054 * 6 4 2 9 9 C 1.46499 * 120.00192 * 174.90153 * 8 6 4 10 10 H 1.09002 * 109.46986 * 324.99555 * 9 8 6 11 11 C 1.52991 * 109.47481 * 84.99497 * 9 8 6 12 12 C 1.50703 * 109.47069 * 204.99653 * 9 8 6 13 13 H 1.07991 * 120.00002 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99746 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00141 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99820 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46817 * 120.00041 * 16 14 12 19 19 H 1.48499 * 109.47321 * 240.00324 * 16 14 12 20 20 N 1.46501 * 109.46719 * 55.77147 * 4 2 1 21 21 C 1.46736 * 125.62425 * 240.00157 * 20 4 2 22 22 C 1.50830 * 106.25189 * 179.97438 * 21 20 4 23 23 C 1.37579 * 133.24010 * 179.97438 * 22 21 20 24 24 C 1.38468 * 119.95697 * 179.97438 * 23 22 21 25 25 C 1.38385 * 120.18744 * 0.03940 * 24 23 22 26 26 C 1.37941 * 120.32318 * 359.97438 * 25 24 23 27 27 C 1.39621 * 119.82409 * 0.02562 * 26 25 24 28 28 C 1.34426 * 125.62576 * 59.69164 * 20 4 2 29 29 O 1.21554 * 124.85485 * 0.02562 * 28 20 4 30 30 H 1.09001 * 109.47018 * 300.00145 * 1 2 3 31 31 H 1.09004 * 109.47448 * 59.99784 * 1 2 3 32 32 H 1.08995 * 109.47269 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47215 * 240.00602 * 2 1 3 34 34 H 1.09001 * 109.46799 * 182.50998 * 3 2 1 35 35 H 1.08990 * 109.47067 * 302.50555 * 3 2 1 36 36 H 1.08995 * 109.46758 * 62.51098 * 3 2 1 37 37 H 0.96998 * 120.00004 * 354.89456 * 8 6 4 38 38 H 1.09007 * 109.47101 * 299.99891 * 11 9 8 39 39 H 1.09004 * 109.47621 * 180.02562 * 11 9 8 40 40 H 1.08998 * 109.47310 * 60.00398 * 11 9 8 41 41 H 0.97001 * 120.00080 * 179.97438 * 15 14 12 42 42 H 1.09000 * 110.09265 * 299.17544 * 21 20 4 43 43 H 1.08996 * 110.09774 * 60.78225 * 21 20 4 44 44 H 1.07999 * 120.01790 * 0.02562 * 23 22 21 45 45 H 1.08001 * 119.90503 * 179.97438 * 24 23 22 46 46 H 1.08001 * 119.83528 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.08401 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7399 -0.1656 2.1375 6 6 3.5434 -0.8126 1.1979 7 8 4.0762 -1.8337 0.8178 8 7 4.2957 0.2403 1.5745 9 6 5.7542 0.1154 1.6314 10 1 6.0203 -0.8910 1.9547 11 6 6.3432 0.3777 0.2440 12 6 6.3066 1.1198 2.6098 13 1 5.6381 1.7849 3.1361 14 6 7.6654 1.1895 2.8329 15 7 8.4795 0.3799 2.1916 16 14 8.3501 2.4350 4.0451 17 1 7.2346 3.2218 4.6297 18 1 9.0750 1.7241 5.1289 19 1 9.2851 3.3489 3.3409 20 7 1.4703 -2.0699 1.3011 21 6 0.6255 -2.6000 2.3775 22 6 0.2866 -4.0174 1.9889 23 6 -0.4602 -5.0059 2.5873 24 6 -0.5937 -6.2395 1.9727 25 6 0.0229 -6.4820 0.7578 26 6 0.7741 -5.4980 0.1494 27 6 0.9133 -4.2516 0.7628 28 6 1.6303 -3.0240 0.3678 29 8 2.2757 -2.8948 -0.6541 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1290 1.4429 -0.0450 35 1 1.6404 1.9692 -0.8666 36 1 1.7138 1.9432 0.9116 37 1 3.8714 1.0808 1.8077 38 1 5.9437 -0.3488 -0.4636 39 1 7.4284 0.2844 0.2863 40 1 6.0772 1.3841 -0.0793 41 1 9.4355 0.4292 2.3483 42 1 1.1713 -2.5906 3.3210 43 1 -0.2852 -2.0077 2.4650 44 1 -0.9427 -4.8194 3.5354 45 1 -1.1798 -7.0150 2.4435 46 1 -0.0854 -7.4461 0.2833 47 1 1.2533 -5.6913 -0.7991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906459310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:53 Heat of formation + Delta-G solvation = -31.011080 kcal Electronic energy + Delta-G solvation = -29120.112397 eV Core-core repulsion = 25268.195884 eV Total energy + Delta-G solvation = -3851.916513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.27171 -39.26685 -37.76229 -36.20305 -35.15510 -34.71067 -32.29951 -31.28209 -31.10624 -29.20507 -27.20896 -27.01011 -26.54657 -25.21768 -23.26108 -21.88001 -21.50368 -20.66143 -19.73325 -19.15912 -17.54343 -16.92314 -16.31923 -16.23636 -15.97340 -15.43679 -15.10914 -14.66997 -14.42829 -14.36200 -14.23432 -13.70217 -13.42296 -13.29872 -13.20862 -13.07411 -12.68251 -12.54966 -12.48348 -12.27971 -12.12554 -12.00535 -11.73702 -11.25519 -11.17208 -11.10956 -11.00160 -10.90875 -10.77621 -10.60328 -10.27723 -10.20947 -9.55360 -9.37001 -9.13018 -9.01109 -8.96429 -8.55622 -8.32446 -7.84137 -6.10487 -4.20221 0.71899 1.11123 2.69986 2.95678 3.23722 3.31365 3.33805 3.41888 3.79190 3.95728 4.15226 4.36195 4.44062 4.70243 4.77060 4.84586 4.92619 5.07917 5.12926 5.18232 5.21540 5.22028 5.27412 5.32411 5.50185 5.56735 5.61186 5.70834 5.75393 5.82730 5.90391 6.07065 6.08895 6.10716 6.19967 6.34733 6.36631 6.62703 6.65461 6.88632 7.05591 7.18944 7.21669 7.51404 7.59717 7.71696 7.95495 8.18668 8.42630 8.69495 8.81056 9.17315 9.47603 10.95285 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.003222 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.359472 B = 8687.250433 C = 9271.717977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C -0.157 4.157 4 C 0.156 3.844 5 H 0.106 0.894 6 C 0.489 3.511 7 O -0.522 6.522 8 N -0.709 5.709 9 C 0.268 3.732 10 H 0.045 0.955 11 C -0.147 4.147 12 C -0.533 4.533 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.882 5.882 16 Si 0.901 3.099 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.602 5.602 21 C 0.144 3.856 22 C -0.084 4.084 23 C -0.104 4.104 24 C -0.095 4.095 25 C -0.129 4.129 26 C -0.050 4.050 27 C -0.145 4.145 28 C 0.563 3.437 29 O -0.492 6.492 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.387 0.613 38 H 0.017 0.983 39 H 0.088 0.912 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.192 -6.228 0.766 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 C -0.214 4.214 4 C 0.050 3.950 5 H 0.124 0.876 6 C 0.271 3.729 7 O -0.398 6.398 8 N -0.359 5.359 9 C 0.166 3.834 10 H 0.063 0.937 11 C -0.205 4.205 12 C -0.571 4.571 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.520 5.520 16 Si 0.728 3.272 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.336 5.336 21 C 0.021 3.979 22 C -0.086 4.086 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.147 4.147 26 C -0.069 4.069 27 C -0.148 4.148 28 C 0.350 3.650 29 O -0.366 6.366 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.220 0.780 38 H 0.036 0.964 39 H 0.107 0.893 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.153 -6.841 -0.071 22.232 hybrid contribution 0.308 1.013 0.921 1.403 sum -20.844 -5.828 0.850 21.661 Atomic orbital electron populations 1.21756 0.94492 1.01623 1.01675 1.21393 0.96277 0.96601 0.98120 1.21987 1.02889 0.94408 1.02155 1.21009 0.92403 0.81088 1.00510 0.87593 1.20518 0.88390 0.84923 0.79109 1.90739 1.73489 1.30436 1.45131 1.46608 1.09902 1.12736 1.66692 1.18704 0.72860 0.98187 0.93619 0.93738 1.22061 1.04212 0.97328 0.96927 1.21251 0.92379 1.19378 1.24122 0.92062 1.24899 0.96798 0.95947 0.96108 1.69927 1.03643 1.37186 1.41200 0.86407 0.79015 0.80954 0.80777 1.19740 1.20923 1.20880 1.47472 1.51415 1.12637 1.22071 1.20450 0.95279 0.90581 0.91620 1.20485 0.97080 0.95533 0.95455 1.20271 0.99388 0.92279 1.00289 1.21270 0.98492 0.96472 0.95125 1.21115 0.98228 0.99261 0.96054 1.20899 0.95773 0.90733 0.99470 1.20588 1.01318 0.95743 0.97196 1.18036 0.80128 0.83217 0.83570 1.90788 1.38910 1.81516 1.25337 0.92677 0.92407 0.92874 0.89150 0.90926 0.91916 0.92265 0.77969 0.96436 0.89319 0.95561 0.92650 0.88832 0.88855 0.85264 0.85199 0.85188 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.99 37.16 0.33 -1.15 16 2 C -0.10 -1.44 2.30 -90.62 -0.21 -1.65 16 3 C -0.16 -1.94 8.28 37.16 0.31 -1.63 16 4 C 0.16 2.38 2.32 -69.08 -0.16 2.22 16 5 H 0.11 1.27 8.10 -51.93 -0.42 0.85 16 6 C 0.49 10.16 6.51 -10.99 -0.07 10.09 16 7 O -0.52 -13.51 13.86 -15.43 -0.21 -13.72 16 8 N -0.71 -14.88 4.07 -54.94 -0.22 -15.10 16 9 C 0.27 6.95 2.52 -69.09 -0.17 6.78 16 10 H 0.04 1.35 7.66 -51.93 -0.40 0.95 16 11 C -0.15 -3.80 9.26 37.15 0.34 -3.45 16 12 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.88 -25.23 11.32 55.43 0.63 -24.60 16 16 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 N -0.60 -9.08 1.86 -169.86 -0.32 -9.39 16 21 C 0.14 1.55 7.36 -5.00 -0.04 1.51 16 22 C -0.08 -0.96 6.38 -104.26 -0.66 -1.62 16 23 C -0.10 -0.90 10.03 -39.74 -0.40 -1.30 16 24 C -0.10 -0.76 10.05 -39.44 -0.40 -1.16 16 25 C -0.13 -1.18 10.02 -39.64 -0.40 -1.58 16 26 C -0.05 -0.61 10.10 -39.17 -0.40 -1.01 16 27 C -0.15 -2.09 6.26 -105.05 -0.66 -2.75 16 28 C 0.56 10.08 6.62 -12.62 -0.08 9.99 16 29 O -0.49 -10.88 15.04 -15.67 -0.24 -11.12 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.61 7.38 -51.93 -0.38 0.23 16 33 H 0.09 1.58 7.03 -51.93 -0.37 1.21 16 34 H 0.07 1.09 6.15 -51.93 -0.32 0.77 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.39 6.92 7.23 -40.82 -0.30 6.62 16 38 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 39 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -35.53 381.02 -9.80 -45.33 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.11 Total: 6.71 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -3.05 Total: 0.51 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.09 Total: -49.10 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.45 Total: -24.84 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.53 -9.80 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906459310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.319 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds