Wall clock time and date at job start Tue Mar 31 2020 15:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46963 * 2 1 4 4 C 1.52999 * 109.47413 * 120.00022 * 2 1 3 5 5 H 1.08992 * 109.47259 * 295.77496 * 4 2 1 6 6 C 1.50699 * 109.47114 * 175.77103 * 4 2 1 7 7 O 1.21284 * 119.99573 * 261.49166 * 6 4 2 8 8 N 1.34770 * 120.00002 * 81.50054 * 6 4 2 9 9 C 1.46499 * 120.00192 * 174.90153 * 8 6 4 10 10 H 1.09002 * 109.46986 * 324.99555 * 9 8 6 11 11 C 1.52991 * 109.47481 * 84.99497 * 9 8 6 12 12 C 1.50703 * 109.47069 * 204.99653 * 9 8 6 13 13 H 1.07991 * 120.00002 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99746 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00141 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99820 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46817 * 120.00041 * 16 14 12 19 19 H 1.48499 * 109.47321 * 240.00324 * 16 14 12 20 20 N 1.46501 * 109.46719 * 55.77147 * 4 2 1 21 21 C 1.46736 * 125.62425 * 240.00157 * 20 4 2 22 22 C 1.50830 * 106.25189 * 179.97438 * 21 20 4 23 23 C 1.37579 * 133.24010 * 179.97438 * 22 21 20 24 24 C 1.38468 * 119.95697 * 179.97438 * 23 22 21 25 25 C 1.38385 * 120.18744 * 0.03940 * 24 23 22 26 26 C 1.37941 * 120.32318 * 359.97438 * 25 24 23 27 27 C 1.39621 * 119.82409 * 0.02562 * 26 25 24 28 28 C 1.34426 * 125.62576 * 59.69164 * 20 4 2 29 29 O 1.21554 * 124.85485 * 0.02562 * 28 20 4 30 30 H 1.09001 * 109.47018 * 300.00145 * 1 2 3 31 31 H 1.09004 * 109.47448 * 59.99784 * 1 2 3 32 32 H 1.08995 * 109.47269 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47215 * 240.00602 * 2 1 3 34 34 H 1.09001 * 109.46799 * 182.50998 * 3 2 1 35 35 H 1.08990 * 109.47067 * 302.50555 * 3 2 1 36 36 H 1.08995 * 109.46758 * 62.51098 * 3 2 1 37 37 H 0.96998 * 120.00004 * 354.89456 * 8 6 4 38 38 H 1.09007 * 109.47101 * 299.99891 * 11 9 8 39 39 H 1.09004 * 109.47621 * 180.02562 * 11 9 8 40 40 H 1.08998 * 109.47310 * 60.00398 * 11 9 8 41 41 H 0.97001 * 120.00080 * 179.97438 * 15 14 12 42 42 H 1.09000 * 110.09265 * 299.17544 * 21 20 4 43 43 H 1.08996 * 110.09774 * 60.78225 * 21 20 4 44 44 H 1.07999 * 120.01790 * 0.02562 * 23 22 21 45 45 H 1.08001 * 119.90503 * 179.97438 * 24 23 22 46 46 H 1.08001 * 119.83528 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.08401 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7399 -0.1656 2.1375 6 6 3.5434 -0.8126 1.1979 7 8 4.0762 -1.8337 0.8178 8 7 4.2957 0.2403 1.5745 9 6 5.7542 0.1154 1.6314 10 1 6.0203 -0.8910 1.9547 11 6 6.3432 0.3777 0.2440 12 6 6.3066 1.1198 2.6098 13 1 5.6381 1.7849 3.1361 14 6 7.6654 1.1895 2.8329 15 7 8.4795 0.3799 2.1916 16 14 8.3501 2.4350 4.0451 17 1 7.2346 3.2218 4.6297 18 1 9.0750 1.7241 5.1289 19 1 9.2851 3.3489 3.3409 20 7 1.4703 -2.0699 1.3011 21 6 0.6255 -2.6000 2.3775 22 6 0.2866 -4.0174 1.9889 23 6 -0.4602 -5.0059 2.5873 24 6 -0.5937 -6.2395 1.9727 25 6 0.0229 -6.4820 0.7578 26 6 0.7741 -5.4980 0.1494 27 6 0.9133 -4.2516 0.7628 28 6 1.6303 -3.0240 0.3678 29 8 2.2757 -2.8948 -0.6541 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1290 1.4429 -0.0450 35 1 1.6404 1.9692 -0.8666 36 1 1.7138 1.9432 0.9116 37 1 3.8714 1.0808 1.8077 38 1 5.9437 -0.3488 -0.4636 39 1 7.4284 0.2844 0.2863 40 1 6.0772 1.3841 -0.0793 41 1 9.4355 0.4292 2.3483 42 1 1.1713 -2.5906 3.3210 43 1 -0.2852 -2.0077 2.4650 44 1 -0.9427 -4.8194 3.5354 45 1 -1.1798 -7.0150 2.4435 46 1 -0.0854 -7.4461 0.2833 47 1 1.2533 -5.6913 -0.7991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906459310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:52 Heat of formation + Delta-G solvation = -53.135449 kcal Electronic energy + Delta-G solvation = -29121.071782 eV Core-core repulsion = 25268.195884 eV Total energy + Delta-G solvation = -3852.875898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.37502 -40.68137 -38.97330 -37.53511 -36.69565 -36.21002 -34.26808 -32.19150 -31.98618 -31.09196 -28.38870 -27.94698 -27.58125 -27.35885 -24.34485 -23.15763 -22.72832 -21.69694 -21.44272 -20.56464 -19.09285 -18.14745 -17.71045 -17.43025 -17.15700 -16.83713 -16.67178 -16.02389 -15.86814 -15.51106 -15.26308 -15.02880 -14.77880 -14.51073 -14.42144 -14.28851 -14.03592 -13.80253 -13.76347 -13.59699 -13.33272 -13.02857 -12.97566 -12.93403 -12.78708 -12.72850 -12.32256 -12.20219 -12.11509 -12.04698 -12.02282 -11.81955 -11.12596 -10.96962 -10.72688 -10.62978 -10.05754 -9.86866 -9.75251 -9.56113 -8.18347 -6.37246 -0.16291 0.35276 1.44321 1.44765 1.52309 1.58283 1.84796 1.92192 2.35309 2.60145 2.86980 3.11786 3.17418 3.43872 3.73376 3.79544 3.89287 3.94334 4.17394 4.19142 4.26375 4.34897 4.46276 4.50552 4.55368 4.61177 4.69152 4.78903 4.79335 4.86558 4.91440 4.95002 5.01298 5.06442 5.16007 5.18915 5.34506 5.37631 5.38753 5.39160 5.46408 5.58403 5.60869 5.64808 5.88333 5.92497 6.03540 6.06247 6.71337 6.92308 7.19465 7.31333 7.55697 8.88494 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.003222 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.359472 B = 8687.250433 C = 9271.717977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C -0.153 4.153 4 C 0.163 3.837 5 H 0.154 0.846 6 C 0.481 3.519 7 O -0.582 6.582 8 N -0.699 5.699 9 C 0.276 3.724 10 H -0.011 1.011 11 C -0.131 4.131 12 C -0.542 4.542 13 H 0.080 0.920 14 C 0.010 3.990 15 N -0.922 5.922 16 Si 0.977 3.023 17 H -0.253 1.253 18 H -0.285 1.285 19 H -0.281 1.281 20 N -0.603 5.603 21 C 0.137 3.863 22 C -0.082 4.082 23 C -0.097 4.097 24 C -0.081 4.081 25 C -0.127 4.127 26 C -0.074 4.074 27 C -0.192 4.192 28 C 0.545 3.455 29 O -0.561 6.561 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.406 0.594 38 H -0.002 1.002 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.265 0.735 42 H 0.107 0.893 43 H 0.138 0.862 44 H 0.170 0.830 45 H 0.172 0.828 46 H 0.157 0.843 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.150 -4.924 4.399 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.119 4.119 3 C -0.211 4.211 4 C 0.057 3.943 5 H 0.172 0.828 6 C 0.266 3.734 7 O -0.461 6.461 8 N -0.350 5.350 9 C 0.173 3.827 10 H 0.007 0.993 11 C -0.190 4.190 12 C -0.580 4.580 13 H 0.098 0.902 14 C -0.190 4.190 15 N -0.560 5.560 16 Si 0.802 3.198 17 H -0.177 1.177 18 H -0.211 1.211 19 H -0.206 1.206 20 N -0.335 5.335 21 C 0.017 3.983 22 C -0.084 4.084 23 C -0.115 4.115 24 C -0.099 4.099 25 C -0.145 4.145 26 C -0.093 4.093 27 C -0.196 4.196 28 C 0.335 3.665 29 O -0.440 6.440 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.243 0.757 38 H 0.017 0.983 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.125 0.875 43 H 0.156 0.844 44 H 0.188 0.812 45 H 0.190 0.810 46 H 0.174 0.826 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -25.186 -5.502 3.608 26.032 hybrid contribution 1.512 0.468 -0.233 1.600 sum -23.675 -5.034 3.375 24.438 Atomic orbital electron populations 1.21685 0.91330 1.01601 1.03826 1.21342 0.98702 0.96687 0.95202 1.21978 1.00732 0.93706 1.04650 1.21085 0.87713 0.82283 1.03205 0.82833 1.21637 0.91084 0.83540 0.77115 1.90722 1.75270 1.32738 1.47370 1.46305 1.08049 1.13984 1.66685 1.18259 0.75885 0.95316 0.93261 0.99345 1.21882 1.02573 0.97581 0.96983 1.21567 0.92968 1.19348 1.24139 0.90153 1.25905 0.97204 0.97895 0.97948 1.70098 1.03964 1.39077 1.42881 0.85218 0.78519 0.78180 0.77928 1.17663 1.21058 1.20645 1.47666 1.51092 1.12154 1.22571 1.20851 0.96306 0.90915 0.90257 1.20726 0.97073 0.96431 0.94125 1.20764 0.98009 0.91392 1.01307 1.21826 0.96942 0.97168 0.93919 1.21445 0.97088 0.99285 0.96676 1.21029 0.97279 0.91429 0.99572 1.20541 1.03816 0.95423 0.99787 1.18836 0.79527 0.84989 0.83134 1.90726 1.42133 1.82947 1.28194 0.89145 0.91550 0.93978 0.94199 0.94179 0.90522 0.88755 0.75706 0.98258 0.91623 0.93884 0.92635 0.87494 0.84446 0.81246 0.81048 0.82584 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.99 71.98 0.65 -1.80 16 2 C -0.10 -2.74 2.30 -10.79 -0.02 -2.76 16 3 C -0.15 -3.56 8.28 71.99 0.60 -2.97 16 4 C 0.16 4.89 2.32 44.24 0.10 5.00 16 5 H 0.15 3.10 8.10 -2.39 -0.02 3.08 16 6 C 0.48 20.99 6.51 87.66 0.57 21.56 16 7 O -0.58 -32.78 13.86 17.03 0.24 -32.55 16 8 N -0.70 -30.08 4.07 -446.11 -1.82 -31.90 16 9 C 0.28 15.04 2.52 44.24 0.11 15.15 16 10 H -0.01 -0.74 7.66 -2.39 -0.02 -0.76 16 11 C -0.13 -7.23 9.26 71.98 0.67 -6.57 16 12 C -0.54 -28.95 8.73 25.60 0.22 -28.73 16 13 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 14 C 0.01 0.55 5.30 84.65 0.45 1.00 16 15 N -0.92 -54.58 11.32 21.45 0.24 -54.33 16 16 Si 0.98 42.08 29.54 68.60 2.03 44.11 16 17 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 20 N -0.60 -18.25 1.86 -809.79 -1.50 -19.75 16 21 C 0.14 2.61 7.36 85.63 0.63 3.24 16 22 C -0.08 -1.71 6.38 -19.63 -0.13 -1.84 16 23 C -0.10 -1.26 10.03 22.17 0.22 -1.04 16 24 C -0.08 -0.96 10.05 22.36 0.22 -0.73 16 25 C -0.13 -2.13 10.02 22.23 0.22 -1.90 16 26 C -0.07 -1.94 10.10 22.53 0.23 -1.71 16 27 C -0.19 -5.81 6.26 -20.14 -0.13 -5.94 16 28 C 0.54 21.07 6.62 86.75 0.57 21.64 16 29 O -0.56 -27.89 15.04 16.18 0.24 -27.65 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.04 0.91 7.38 -2.39 -0.02 0.89 16 33 H 0.04 1.51 7.03 -2.39 -0.02 1.49 16 34 H 0.04 1.19 6.15 -2.39 -0.01 1.18 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.41 14.15 7.23 -92.71 -0.67 13.48 16 38 H 0.00 -0.10 8.09 -2.38 -0.02 -0.12 16 39 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 40 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 43 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 45 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 46 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -89.53 381.02 4.93 -84.60 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.31 Total: 25.87 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 5.19 Total: 11.60 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -3.08 Total: -105.98 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: 0.48 Total: -60.20 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -89.53 4.93 -84.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906459310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.464 kcal (2) G-P(sol) polarization free energy of solvation -89.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds