Wall clock time and date at job start Tue Mar 31 2020 16:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47465 * 2 1 4 4 N 1.46500 * 109.46655 * 120.00232 * 2 1 3 5 5 C 1.46503 * 120.00175 * 294.34718 * 4 2 1 6 6 C 1.50701 * 109.46700 * 270.00437 * 5 4 2 7 7 H 1.08001 * 120.00382 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99411 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00454 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99758 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47170 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47370 * 119.99670 * 10 8 6 13 13 H 1.48508 * 109.47099 * 239.99944 * 10 8 6 14 14 C 1.34779 * 119.99938 * 114.34501 * 4 2 1 15 15 O 1.21282 * 119.99741 * 184.27816 * 14 4 2 16 16 C 1.50702 * 120.00157 * 4.28564 * 14 4 2 17 17 H 1.09007 * 109.46734 * 323.71540 * 16 14 4 18 18 C 1.52994 * 109.47605 * 83.71471 * 16 14 4 19 19 N 1.46497 * 109.46850 * 203.72240 * 16 14 4 20 20 C 1.46729 * 125.62616 * 119.99904 * 19 16 14 21 21 C 1.50829 * 106.25205 * 179.97438 * 20 19 16 22 22 C 1.37579 * 133.23853 * 180.02562 * 21 20 19 23 23 C 1.38474 * 119.95310 * 180.02562 * 22 21 20 24 24 C 1.38378 * 120.19032 * 359.97370 * 23 22 21 25 25 C 1.37939 * 120.32366 * 0.02562 * 24 23 22 26 26 C 1.39624 * 119.82283 * 0.02562 * 25 24 23 27 27 C 1.34428 * 125.62206 * 299.96680 * 19 16 14 28 28 O 1.21546 * 124.85538 * 0.04760 * 27 19 16 29 29 H 1.09000 * 109.46906 * 300.00562 * 1 2 3 30 30 H 1.09006 * 109.46619 * 60.00017 * 1 2 3 31 31 H 1.08994 * 109.47511 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46906 * 239.99438 * 2 1 3 33 33 H 1.08996 * 109.47080 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47107 * 300.00080 * 3 2 1 35 35 H 1.09008 * 109.47184 * 59.99830 * 3 2 1 36 36 H 1.09004 * 109.46791 * 30.00158 * 5 4 2 37 37 H 1.08994 * 109.46977 * 150.00096 * 5 4 2 38 38 H 0.96996 * 119.99933 * 180.02562 * 9 8 6 39 39 H 1.09009 * 109.46907 * 54.92850 * 18 16 14 40 40 H 1.08996 * 109.47278 * 174.92308 * 18 16 14 41 41 H 1.08998 * 109.47148 * 294.93029 * 18 16 14 42 42 H 1.09003 * 110.10154 * 299.16978 * 20 19 16 43 43 H 1.09003 * 110.10219 * 60.71496 * 20 19 16 44 44 H 1.07998 * 120.02569 * 0.02562 * 22 21 20 45 45 H 1.08003 * 119.90355 * 179.97438 * 23 22 21 46 46 H 1.08005 * 119.84252 * 180.29370 * 24 23 22 47 47 H 1.07999 * 120.09206 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7693 -0.1222 2.5233 6 6 2.9044 0.7958 2.8975 7 1 3.7289 0.9409 2.2153 8 6 2.8900 1.4504 4.1109 9 7 1.8857 1.2742 4.9414 10 14 4.2973 2.5877 4.5751 11 1 5.2962 2.6132 3.4766 12 1 3.7725 3.9587 4.7994 13 1 4.9424 2.0950 5.8187 14 6 2.6965 -1.8491 1.0758 15 8 3.0331 -2.4606 2.0676 16 6 3.0368 -2.3846 -0.2912 17 1 2.2202 -2.1677 -0.9799 18 6 4.3190 -1.7191 -0.7950 19 7 3.2371 -3.8336 -0.2121 20 6 2.4640 -4.8444 -0.9425 21 6 3.0323 -6.1824 -0.5403 22 6 2.7275 -7.4785 -0.8869 23 6 3.4444 -8.5280 -0.3374 24 6 4.4677 -8.2773 0.5598 25 6 4.7815 -6.9816 0.9141 26 6 4.0624 -5.9181 0.3650 27 6 4.1599 -4.4565 0.5412 28 8 4.9591 -3.8958 1.2653 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 0.8363 0.4412 2.5079 37 1 1.6960 -0.9265 3.2551 38 1 1.8756 1.7350 5.7948 39 1 5.1135 -1.8597 -0.0620 40 1 4.6147 -2.1704 -1.7421 41 1 4.1426 -0.6533 -0.9397 42 1 1.4119 -4.7852 -0.6634 43 1 2.5750 -4.6969 -2.0167 44 1 1.9297 -7.6772 -1.5872 45 1 3.2042 -9.5451 -0.6097 46 1 5.0264 -9.0999 0.9814 47 1 5.5806 -6.7903 1.6149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906483196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:59 Heat of formation + Delta-G solvation = -17.740729 kcal Electronic energy + Delta-G solvation = -29245.791509 eV Core-core repulsion = 25394.450441 eV Total energy + Delta-G solvation = -3851.341067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17480 -39.32846 -37.86080 -35.99234 -35.74959 -33.32772 -32.60687 -31.21314 -30.80878 -29.65371 -27.44305 -26.69216 -26.61669 -24.85620 -23.48091 -22.13693 -21.81232 -21.19926 -19.87941 -18.03398 -17.37672 -16.64786 -16.40049 -16.17847 -16.03418 -15.58852 -14.92547 -14.56137 -14.41322 -14.22542 -13.92081 -13.63637 -13.51797 -13.28756 -13.23669 -13.07442 -12.87938 -12.49648 -12.35011 -12.11863 -11.98196 -11.79519 -11.73243 -11.62714 -11.47040 -11.20078 -11.09216 -10.89234 -10.81896 -10.55087 -10.34661 -9.97651 -9.51863 -9.47837 -9.31483 -9.10334 -8.92934 -8.37256 -8.30106 -7.59456 -5.98211 -4.01016 0.73477 1.12067 2.72239 2.98303 3.33663 3.40813 3.43030 3.49282 3.79907 3.95056 4.07907 4.40099 4.50412 4.71046 4.78319 4.93919 4.95438 5.07182 5.13298 5.21844 5.26238 5.30937 5.33631 5.36532 5.53421 5.55619 5.61295 5.71190 5.77189 5.81390 5.97097 6.07963 6.11133 6.13365 6.21140 6.24350 6.33883 6.38659 6.59074 6.63670 6.66810 6.98448 7.14474 7.22220 7.52881 7.62088 7.99079 8.30981 8.44271 8.49995 8.97965 9.16370 9.63092 11.10015 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.003528 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.507749 B = 7933.602975 C = 8806.082278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 C -0.155 4.155 4 N -0.593 5.593 5 C 0.249 3.751 6 C -0.516 4.516 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.492 3.508 15 O -0.510 6.510 16 C 0.147 3.853 17 H 0.106 0.894 18 C -0.159 4.159 19 N -0.608 5.608 20 C 0.145 3.855 21 C -0.086 4.086 22 C -0.104 4.104 23 C -0.096 4.096 24 C -0.128 4.128 25 C -0.050 4.050 26 C -0.144 4.144 27 C 0.559 3.441 28 O -0.486 6.486 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.040 0.960 38 H 0.261 0.739 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -14.604 -18.492 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 C -0.213 4.213 4 N -0.326 5.326 5 C 0.130 3.870 6 C -0.555 4.555 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.276 3.724 15 O -0.384 6.384 16 C 0.042 3.958 17 H 0.124 0.876 18 C -0.217 4.217 19 N -0.343 5.343 20 C 0.022 3.978 21 C -0.087 4.087 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.146 4.146 25 C -0.069 4.069 26 C -0.147 4.147 27 C 0.347 3.653 28 O -0.358 6.358 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.226 -14.425 -17.349 22.596 hybrid contribution 0.578 0.702 0.357 0.977 sum -0.648 -13.722 -16.993 21.851 Atomic orbital electron populations 1.22182 0.95729 1.01645 1.02483 1.21056 0.93965 0.94498 0.87929 1.22118 1.01650 0.95301 1.02231 1.48318 1.53854 1.21621 1.08841 1.19203 0.96464 0.93949 0.77377 1.21477 1.06278 1.25456 1.02298 0.92329 1.24920 0.96016 0.97117 0.96123 1.69940 1.30836 1.43263 1.09505 0.86500 0.82467 0.80182 0.78635 1.19798 1.21094 1.20979 1.20417 0.79516 0.82051 0.90437 1.90755 1.51225 1.57762 1.38634 1.20942 0.99916 0.77903 0.97072 0.87638 1.22065 0.97125 1.00754 1.01733 1.47618 1.35590 1.04852 1.46254 1.20411 0.96285 0.83965 0.97113 1.20483 0.96507 0.94526 0.97179 1.20262 1.00673 0.90205 1.01103 1.21266 0.95122 0.98927 0.96126 1.21117 0.98419 0.96338 0.98743 1.20915 0.97886 0.90934 0.97134 1.20607 0.98968 0.94826 1.00309 1.18083 0.81322 0.86233 0.79704 1.90822 1.37605 1.71491 1.35896 0.91375 0.92212 0.93082 0.90975 0.92427 0.93297 0.90068 0.94914 0.94165 0.92921 0.90318 0.91758 0.90459 0.89035 0.88905 0.85287 0.85207 0.85177 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.26 37.16 0.34 -1.91 16 2 C 0.13 2.05 2.93 -67.93 -0.20 1.85 16 3 C -0.16 -2.50 8.34 37.15 0.31 -2.19 16 4 N -0.59 -12.51 2.38 -167.47 -0.40 -12.91 16 5 C 0.25 6.53 4.48 -5.19 -0.02 6.50 16 6 C -0.52 -14.62 7.85 -34.44 -0.27 -14.89 16 7 H 0.06 1.67 7.53 -52.49 -0.40 1.27 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 10 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.49 10.69 6.85 -10.98 -0.08 10.61 16 15 O -0.51 -13.85 13.67 -15.86 -0.22 -14.06 16 16 C 0.15 2.34 2.48 -69.09 -0.17 2.17 16 17 H 0.11 1.27 6.26 -51.92 -0.32 0.94 16 18 C -0.16 -2.37 9.01 37.15 0.33 -2.04 16 19 N -0.61 -9.53 2.79 -169.86 -0.47 -10.00 16 20 C 0.15 1.57 7.36 -5.01 -0.04 1.53 16 21 C -0.09 -0.98 6.38 -104.27 -0.66 -1.65 16 22 C -0.10 -0.90 10.03 -39.73 -0.40 -1.30 16 23 C -0.10 -0.78 10.05 -39.44 -0.40 -1.18 16 24 C -0.13 -1.20 10.02 -39.64 -0.40 -1.60 16 25 C -0.05 -0.63 10.10 -39.17 -0.40 -1.03 16 26 C -0.14 -2.13 6.26 -105.05 -0.66 -2.79 16 27 C 0.56 10.47 6.78 -12.62 -0.09 10.38 16 28 O -0.49 -11.37 14.98 -16.09 -0.24 -11.61 16 29 H 0.07 1.09 6.90 -51.93 -0.36 0.74 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.92 4.94 -51.93 -0.26 0.66 16 33 H 0.06 0.99 7.96 -51.93 -0.41 0.57 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.56 6.94 -51.92 -0.36 1.20 16 36 H 0.03 0.86 6.71 -51.93 -0.35 0.51 16 37 H 0.04 1.23 7.37 -51.93 -0.38 0.84 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 1.48 7.08 -51.92 -0.37 1.11 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.06 7.63 -51.93 -0.40 0.67 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 46 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 47 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -37.95 380.32 -9.73 -47.68 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.97 Total: -0.07 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.88 Total: 4.11 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.14 Total: -49.17 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.46 Total: -25.68 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.95 -9.73 -47.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906483196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.939 kcal (2) G-P(sol) polarization free energy of solvation -37.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds