Wall clock time and date at job start Tue Mar 31 2020 16:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.47465 * 2 1 4 4 N 1.46500 * 109.46655 * 120.00232 * 2 1 3 5 5 C 1.46503 * 120.00175 * 294.34718 * 4 2 1 6 6 C 1.50701 * 109.46700 * 270.00437 * 5 4 2 7 7 H 1.08001 * 120.00382 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99411 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00454 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99758 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47170 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47370 * 119.99670 * 10 8 6 13 13 H 1.48508 * 109.47099 * 239.99944 * 10 8 6 14 14 C 1.34779 * 119.99938 * 114.34501 * 4 2 1 15 15 O 1.21282 * 119.99741 * 184.27816 * 14 4 2 16 16 C 1.50702 * 120.00157 * 4.28564 * 14 4 2 17 17 H 1.09007 * 109.46734 * 323.71540 * 16 14 4 18 18 C 1.52994 * 109.47605 * 83.71471 * 16 14 4 19 19 N 1.46497 * 109.46850 * 203.72240 * 16 14 4 20 20 C 1.46729 * 125.62616 * 119.99904 * 19 16 14 21 21 C 1.50829 * 106.25205 * 179.97438 * 20 19 16 22 22 C 1.37579 * 133.23853 * 180.02562 * 21 20 19 23 23 C 1.38474 * 119.95310 * 180.02562 * 22 21 20 24 24 C 1.38378 * 120.19032 * 359.97370 * 23 22 21 25 25 C 1.37939 * 120.32366 * 0.02562 * 24 23 22 26 26 C 1.39624 * 119.82283 * 0.02562 * 25 24 23 27 27 C 1.34428 * 125.62206 * 299.96680 * 19 16 14 28 28 O 1.21546 * 124.85538 * 0.04760 * 27 19 16 29 29 H 1.09000 * 109.46906 * 300.00562 * 1 2 3 30 30 H 1.09006 * 109.46619 * 60.00017 * 1 2 3 31 31 H 1.08994 * 109.47511 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46906 * 239.99438 * 2 1 3 33 33 H 1.08996 * 109.47080 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47107 * 300.00080 * 3 2 1 35 35 H 1.09008 * 109.47184 * 59.99830 * 3 2 1 36 36 H 1.09004 * 109.46791 * 30.00158 * 5 4 2 37 37 H 1.08994 * 109.46977 * 150.00096 * 5 4 2 38 38 H 0.96996 * 119.99933 * 180.02562 * 9 8 6 39 39 H 1.09009 * 109.46907 * 54.92850 * 18 16 14 40 40 H 1.08996 * 109.47278 * 174.92308 * 18 16 14 41 41 H 1.08998 * 109.47148 * 294.93029 * 18 16 14 42 42 H 1.09003 * 110.10154 * 299.16978 * 20 19 16 43 43 H 1.09003 * 110.10219 * 60.71496 * 20 19 16 44 44 H 1.07998 * 120.02569 * 0.02562 * 22 21 20 45 45 H 1.08003 * 119.90355 * 179.97438 * 23 22 21 46 46 H 1.08005 * 119.84252 * 180.29370 * 24 23 22 47 47 H 1.07999 * 120.09206 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7693 -0.1222 2.5233 6 6 2.9044 0.7958 2.8975 7 1 3.7289 0.9409 2.2153 8 6 2.8900 1.4504 4.1109 9 7 1.8857 1.2742 4.9414 10 14 4.2973 2.5877 4.5751 11 1 5.2962 2.6132 3.4766 12 1 3.7725 3.9587 4.7994 13 1 4.9424 2.0950 5.8187 14 6 2.6965 -1.8491 1.0758 15 8 3.0331 -2.4606 2.0676 16 6 3.0368 -2.3846 -0.2912 17 1 2.2202 -2.1677 -0.9799 18 6 4.3190 -1.7191 -0.7950 19 7 3.2371 -3.8336 -0.2121 20 6 2.4640 -4.8444 -0.9425 21 6 3.0323 -6.1824 -0.5403 22 6 2.7275 -7.4785 -0.8869 23 6 3.4444 -8.5280 -0.3374 24 6 4.4677 -8.2773 0.5598 25 6 4.7815 -6.9816 0.9141 26 6 4.0624 -5.9181 0.3650 27 6 4.1599 -4.4565 0.5412 28 8 4.9591 -3.8958 1.2653 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 0.8363 0.4412 2.5079 37 1 1.6960 -0.9265 3.2551 38 1 1.8756 1.7350 5.7948 39 1 5.1135 -1.8597 -0.0620 40 1 4.6147 -2.1704 -1.7421 41 1 4.1426 -0.6533 -0.9397 42 1 1.4119 -4.7852 -0.6634 43 1 2.5750 -4.6969 -2.0167 44 1 1.9297 -7.6772 -1.5872 45 1 3.2042 -9.5451 -0.6097 46 1 5.0264 -9.0999 0.9814 47 1 5.5806 -6.7903 1.6149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906483196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:58 Heat of formation + Delta-G solvation = -42.798273 kcal Electronic energy + Delta-G solvation = -29246.878085 eV Core-core repulsion = 25394.450441 eV Total energy + Delta-G solvation = -3852.427644 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.29311 -40.80239 -39.00096 -37.54808 -37.12496 -35.07882 -34.19404 -32.42419 -32.03209 -30.73809 -29.37295 -27.89727 -27.62240 -26.19863 -25.14020 -23.53543 -22.77453 -22.41761 -21.12316 -19.49870 -18.69200 -18.62311 -17.82491 -17.36913 -17.12204 -16.71996 -16.63790 -16.04279 -15.82399 -15.31238 -15.24931 -14.93872 -14.75269 -14.68385 -14.40489 -14.30732 -14.01910 -14.00053 -13.48200 -13.45622 -13.30148 -13.25281 -13.12027 -12.90115 -12.79298 -12.73945 -12.68462 -12.53683 -12.24048 -12.09855 -11.98002 -11.64460 -11.54014 -10.91011 -10.66922 -10.64255 -10.05202 -9.86889 -9.57180 -9.42385 -8.22957 -6.34451 -0.15872 0.35855 1.29765 1.33888 1.44470 1.53560 1.82375 1.93327 2.32947 2.43948 2.87024 3.06581 3.15289 3.43236 3.58160 3.76748 3.94427 3.97112 4.04476 4.18475 4.30254 4.35626 4.41268 4.45405 4.49506 4.53158 4.60595 4.65918 4.79400 4.84446 4.89221 5.00118 5.02557 5.05753 5.09873 5.11284 5.20673 5.25108 5.38941 5.44921 5.46962 5.58714 5.61069 5.65822 5.88131 5.93090 6.03459 6.08789 6.71480 6.80558 7.18343 7.29816 7.50990 8.84539 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.003528 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.507749 B = 7933.602975 C = 8806.082278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 C -0.151 4.151 4 N -0.594 5.594 5 C 0.270 3.730 6 C -0.523 4.523 7 H 0.051 0.949 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.269 1.269 12 H -0.265 1.265 13 H -0.287 1.287 14 C 0.478 3.522 15 O -0.579 6.579 16 C 0.156 3.844 17 H 0.161 0.839 18 C -0.152 4.152 19 N -0.609 5.609 20 C 0.139 3.861 21 C -0.082 4.082 22 C -0.095 4.095 23 C -0.081 4.081 24 C -0.128 4.128 25 C -0.075 4.075 26 C -0.193 4.193 27 C 0.540 3.460 28 O -0.561 6.561 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.028 0.972 37 H -0.017 1.017 38 H 0.265 0.735 39 H 0.027 0.973 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.111 0.889 43 H 0.141 0.859 44 H 0.173 0.827 45 H 0.173 0.827 46 H 0.156 0.844 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.429 -16.052 -23.419 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 C -0.209 4.209 4 N -0.327 5.327 5 C 0.148 3.852 6 C -0.562 4.562 7 H 0.069 0.931 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.189 1.189 13 H -0.214 1.214 14 C 0.264 3.736 15 O -0.458 6.458 16 C 0.051 3.949 17 H 0.178 0.822 18 C -0.210 4.210 19 N -0.342 5.342 20 C 0.019 3.981 21 C -0.083 4.083 22 C -0.113 4.113 23 C -0.098 4.098 24 C -0.145 4.145 25 C -0.095 4.095 26 C -0.196 4.196 27 C 0.330 3.670 28 O -0.440 6.440 29 H 0.054 0.946 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.001 0.999 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.158 0.842 44 H 0.190 0.810 45 H 0.190 0.810 46 H 0.173 0.827 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.947 -15.866 -22.369 27.582 hybrid contribution 1.042 1.038 1.864 2.374 sum -1.905 -14.827 -20.505 25.376 Atomic orbital electron populations 1.22151 0.93872 1.02433 1.02966 1.21552 0.95470 0.94219 0.86895 1.22068 1.00657 0.95627 1.02537 1.48365 1.53707 1.21908 1.08681 1.18551 0.95707 0.91484 0.79419 1.21682 1.06470 1.25608 1.02461 0.93085 1.25798 0.98583 0.98810 0.96120 1.70055 1.32650 1.44369 1.09957 0.85488 0.79265 0.78881 0.77921 1.19332 1.18941 1.21370 1.21645 0.78028 0.81455 0.92428 1.90729 1.53620 1.59809 1.41638 1.21004 1.01902 0.78350 0.93647 0.82161 1.22044 0.95081 1.02015 1.01853 1.47833 1.35138 1.05460 1.45807 1.20863 0.96185 0.82143 0.98955 1.20753 0.95197 0.96209 0.96149 1.20776 1.01054 0.88619 1.00867 1.21836 0.93147 1.00953 0.93906 1.21439 0.99084 0.95159 0.98845 1.21030 0.98130 0.92493 0.97802 1.20533 1.02363 0.92869 1.03854 1.18956 0.80863 0.88262 0.78941 1.90756 1.40738 1.73260 1.39204 0.94637 0.87898 0.92185 0.86408 0.93946 0.88628 0.94026 0.95447 0.99938 0.92638 0.95345 0.87900 0.89027 0.87118 0.84166 0.80985 0.80969 0.82656 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.26 71.98 0.67 -3.27 16 2 C 0.12 3.56 2.93 44.99 0.13 3.70 16 3 C -0.15 -4.66 8.34 71.98 0.60 -4.06 16 4 N -0.59 -25.88 2.38 -802.13 -1.91 -27.79 16 5 C 0.27 15.16 4.48 85.63 0.38 15.54 16 6 C -0.52 -31.37 7.85 25.60 0.20 -31.17 16 7 H 0.05 3.06 7.53 -2.91 -0.02 3.04 16 8 C 0.01 0.31 5.46 84.66 0.46 0.77 16 9 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 10 Si 0.96 47.67 29.54 68.60 2.03 49.70 16 11 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 14 C 0.48 21.64 6.85 87.66 0.60 22.24 16 15 O -0.58 -34.29 13.67 17.44 0.24 -34.05 16 16 C 0.16 4.77 2.48 44.24 0.11 4.88 16 17 H 0.16 3.05 6.26 -2.38 -0.01 3.03 16 18 C -0.15 -4.41 9.01 71.98 0.65 -3.76 16 19 N -0.61 -18.76 2.79 -809.80 -2.26 -21.02 16 20 C 0.14 2.51 7.36 85.63 0.63 3.14 16 21 C -0.08 -1.68 6.38 -19.63 -0.13 -1.80 16 22 C -0.10 -1.19 10.03 22.17 0.22 -0.97 16 23 C -0.08 -0.94 10.05 22.36 0.22 -0.72 16 24 C -0.13 -2.17 10.02 22.23 0.22 -1.95 16 25 C -0.08 -2.03 10.10 22.53 0.23 -1.80 16 26 C -0.19 -5.94 6.26 -20.14 -0.13 -6.07 16 27 C 0.54 21.63 6.78 86.75 0.59 22.21 16 28 O -0.56 -29.35 14.98 16.62 0.25 -29.10 16 29 H 0.03 1.12 6.90 -2.39 -0.02 1.11 16 30 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.12 2.41 4.94 -2.39 -0.01 2.40 16 33 H 0.04 1.41 7.96 -2.39 -0.02 1.40 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.61 6.94 -2.38 -0.02 1.59 16 36 H 0.03 1.55 6.71 -2.38 -0.02 1.54 16 37 H -0.02 -1.17 7.37 -2.39 -0.02 -1.19 16 38 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.03 1.11 7.08 -2.38 -0.02 1.10 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.09 2.34 7.63 -2.39 -0.02 2.32 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 45 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 46 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 47 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -99.00 380.32 5.27 -93.73 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.97 Total: 10.08 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 5.67 Total: 16.91 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -3.89 Total: -107.26 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: 0.49 Total: -63.16 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -99.00 5.27 -93.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906483196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.934 kcal (2) G-P(sol) polarization free energy of solvation -99.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds