Wall clock time and date at job start Tue Mar 31 2020 16:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 C 1.52996 * 109.47122 * 120.00378 * 2 1 3 5 5 N 1.46502 * 109.47167 * 65.98981 * 4 2 1 6 6 C 1.46502 * 119.99849 * 84.39883 * 5 4 2 7 7 C 1.50692 * 109.47539 * 86.96489 * 6 5 4 8 8 H 1.08009 * 120.00166 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00315 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99784 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00394 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47052 * 60.00149 * 11 9 7 13 13 H 1.48495 * 109.47100 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46848 * 300.00171 * 11 9 7 15 15 C 1.34776 * 120.00302 * 264.39309 * 5 4 2 16 16 O 1.21282 * 119.99625 * 4.65364 * 15 5 4 17 17 C 1.50700 * 120.00111 * 184.65495 * 15 5 4 18 18 H 1.08996 * 109.47038 * 41.79237 * 17 15 5 19 19 C 1.52995 * 109.46922 * 281.78965 * 17 15 5 20 20 O 1.42894 * 109.47076 * 161.78995 * 17 15 5 21 21 C 1.35764 * 116.99961 * 202.68408 * 20 17 15 22 22 C 1.38956 * 119.90122 * 356.80574 * 21 20 17 23 23 C 1.37739 * 120.09265 * 179.72389 * 22 21 20 24 24 C 1.39754 * 119.90149 * 0.54618 * 23 22 21 25 25 C 1.43201 * 120.09606 * 179.70613 * 24 23 22 26 26 N 9.71732 * 129.49994 * 184.31722 * 5 1 2 27 27 C 1.39758 * 119.81358 * 359.72688 * 24 23 22 28 28 C 1.37739 * 119.90473 * 359.97438 * 27 24 23 29 29 H 1.09001 * 109.47046 * 60.30173 * 1 2 3 30 30 H 1.08996 * 109.47139 * 180.29902 * 1 2 3 31 31 H 1.08994 * 109.47135 * 300.30379 * 1 2 3 32 32 H 1.09005 * 109.47052 * 240.00040 * 2 1 3 33 33 H 1.08996 * 109.46901 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47484 * 300.00150 * 3 2 1 35 35 H 1.09007 * 109.46593 * 60.00132 * 3 2 1 36 36 H 1.09008 * 109.46713 * 305.99247 * 4 2 1 37 37 H 1.08994 * 109.47647 * 185.99445 * 4 2 1 38 38 H 1.09002 * 109.47194 * 206.97056 * 6 5 4 39 39 H 1.09009 * 109.46656 * 326.96505 * 6 5 4 40 40 H 0.97001 * 120.00140 * 179.97438 * 10 9 7 41 41 H 1.08996 * 109.47153 * 174.01564 * 19 17 15 42 42 H 1.09006 * 109.47294 * 294.01573 * 19 17 15 43 43 H 1.08999 * 109.47661 * 54.01891 * 19 17 15 44 44 H 1.08000 * 119.95727 * 359.97438 * 22 21 20 45 45 H 1.07998 * 120.05166 * 180.25672 * 23 22 21 46 46 H 1.08002 * 120.04972 * 179.97438 * 27 24 23 47 47 H 1.07993 * 119.95059 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6729 -2.1379 1.1792 6 6 2.5221 -3.0792 0.4450 7 6 3.6038 -3.5970 1.3575 8 1 3.6535 -3.2591 2.3821 9 6 4.5299 -4.5021 0.8844 10 7 4.4697 -4.9133 -0.3633 11 14 5.8705 -5.1446 2.0158 12 1 5.2508 -5.8375 3.1738 13 1 6.7312 -6.0986 1.2714 14 1 6.6945 -4.0088 2.5016 15 6 0.5540 -2.5751 1.7903 16 8 -0.1929 -1.7839 2.3261 17 6 0.2312 -4.0470 1.8079 18 1 1.1402 -4.6161 2.0024 19 6 -0.3480 -4.4583 0.4528 20 8 -0.7258 -4.3125 2.8353 21 6 -0.7816 -5.5822 3.3125 22 6 0.0231 -6.5680 2.7543 23 6 -0.0261 -7.8563 3.2392 24 6 -0.8953 -8.1738 4.2865 25 6 -0.9544 -9.5132 4.7896 26 7 -1.0013 -10.5758 5.1887 27 6 -1.7070 -7.1804 4.8412 28 6 -1.6470 -5.8934 4.3544 29 1 -0.3633 0.5091 -0.8927 30 1 -0.3633 -1.0276 0.0054 31 1 -0.3633 0.5185 0.8872 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.5916 -0.2731 2.1359 37 1 3.1246 -0.6294 1.3045 38 1 1.9169 -3.9130 0.0891 39 1 2.9766 -2.5711 -0.4056 40 1 5.1215 -5.5498 -0.6963 41 1 -0.4823 -5.5396 0.4282 42 1 -1.3109 -3.9690 0.3056 43 1 0.3366 -4.1591 -0.3409 44 1 0.6910 -6.3229 1.9418 45 1 0.6026 -8.6210 2.8076 46 1 -2.3804 -7.4217 5.6504 47 1 -2.2741 -5.1253 4.7821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920445435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:50 Heat of formation + Delta-G solvation = -39.354458 kcal Electronic energy + Delta-G solvation = -28589.039103 eV Core-core repulsion = 24736.760794 eV Total energy + Delta-G solvation = -3852.278309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79918 -40.64201 -38.93996 -37.43280 -37.08196 -35.87569 -34.26730 -33.06796 -31.94322 -31.16704 -29.32700 -27.98824 -27.42376 -25.78936 -24.80960 -24.11816 -23.53130 -21.25205 -20.18055 -19.88434 -19.21419 -18.58431 -17.91011 -17.39302 -16.75772 -16.62754 -16.21059 -15.94551 -15.64139 -15.50530 -15.15765 -14.98145 -14.85453 -14.56711 -14.41556 -14.29802 -14.05045 -13.91280 -13.71188 -13.47401 -13.45180 -13.12515 -13.08182 -12.99429 -12.84731 -12.75869 -12.61886 -12.47004 -12.26672 -12.06932 -11.99206 -11.78177 -11.76273 -11.56022 -11.49201 -10.69405 -10.48945 -10.09465 -9.43637 -9.26962 -8.19104 -6.32833 -0.17267 0.32178 1.42826 1.44967 1.48923 1.54112 1.63239 1.80041 1.92188 2.39231 2.65492 2.87143 2.91597 3.11458 3.49718 3.76468 3.88320 3.92314 3.96131 4.06392 4.09054 4.14602 4.22529 4.41785 4.54058 4.62945 4.65446 4.69100 4.71058 4.83751 4.88364 4.92564 4.96570 5.03838 5.05354 5.08715 5.11569 5.24386 5.27345 5.30504 5.33406 5.44687 5.50056 5.57855 5.68113 5.83384 6.06480 6.26991 6.47283 6.54705 6.80494 7.25457 7.40701 8.85412 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.004118 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.908561 B = 6797.559727 C = 9007.375544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.121 3.879 5 N -0.588 5.588 6 C 0.240 3.760 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.035 3.965 10 N -0.911 5.911 11 Si 0.941 3.059 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.276 1.276 15 C 0.519 3.481 16 O -0.569 6.569 17 C 0.070 3.930 18 H 0.105 0.895 19 C -0.168 4.168 20 O -0.300 6.300 21 C 0.150 3.850 22 C -0.219 4.219 23 C -0.021 4.021 24 C -0.084 4.084 25 C 0.288 3.712 26 N -0.471 5.471 27 C -0.014 4.014 28 C -0.155 4.155 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.024 0.976 40 H 0.268 0.732 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.140 0.860 45 H 0.148 0.852 46 H 0.168 0.832 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.862 2.205 1.914 9.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.127 4.127 3 C -0.194 4.194 4 C -0.001 4.001 5 N -0.319 5.319 6 C 0.120 3.880 7 C -0.589 4.589 8 H 0.069 0.931 9 C -0.167 4.167 10 N -0.550 5.550 11 Si 0.768 3.232 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.201 1.201 15 C 0.306 3.694 16 O -0.450 6.450 17 C 0.010 3.990 18 H 0.123 0.877 19 C -0.225 4.225 20 O -0.212 6.212 21 C 0.103 3.897 22 C -0.238 4.238 23 C -0.042 4.042 24 C -0.088 4.088 25 C -0.026 4.026 26 N -0.148 5.148 27 C -0.034 4.034 28 C -0.174 4.174 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.157 0.843 45 H 0.166 0.834 46 H 0.186 0.814 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.320 1.038 2.709 9.761 hybrid contribution 1.387 -0.153 0.038 1.396 sum -7.933 0.885 2.747 8.442 Atomic orbital electron populations 1.21665 0.94885 1.00622 1.01312 1.21455 0.96338 0.97320 0.97573 1.21709 1.01174 0.93931 1.02547 1.21551 0.99952 0.79940 0.98679 1.48067 1.22714 1.09708 1.51406 1.19379 0.89286 0.88086 0.91269 1.21619 1.13419 1.25992 0.97872 0.93111 1.25440 0.99034 0.96167 0.96055 1.69963 1.37105 1.32529 1.15372 0.85858 0.79688 0.78332 0.79371 1.19651 1.20811 1.20137 1.20127 0.81130 0.89752 0.78356 1.90612 1.49619 1.57367 1.47372 1.22264 0.93025 0.94579 0.89090 0.87733 1.22336 1.02262 1.03884 0.94038 1.86111 1.56015 1.26594 1.52478 1.19728 0.94092 0.83142 0.92697 1.21414 1.03741 0.93619 1.05029 1.21091 0.94594 0.96002 0.92472 1.15941 1.04860 0.86167 1.01804 1.25713 0.92167 0.92465 0.92222 1.81266 1.10242 1.12682 1.10593 1.21179 0.95243 0.89691 0.97322 1.20554 1.01619 0.97984 0.97237 0.91764 0.94983 0.93326 0.91816 0.92226 0.91198 0.92259 0.91285 0.90758 0.93334 0.95771 0.92244 0.89130 0.90807 0.89929 0.84267 0.83388 0.81406 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 8.12 71.98 0.58 -3.14 16 2 C -0.11 -3.12 3.11 -10.79 -0.03 -3.16 16 3 C -0.14 -3.09 9.19 71.98 0.66 -2.43 16 4 C 0.12 4.19 4.95 86.38 0.43 4.62 16 5 N -0.59 -22.72 2.27 -826.15 -1.87 -24.60 16 6 C 0.24 10.27 4.73 85.63 0.40 10.68 16 7 C -0.55 -26.22 8.92 25.60 0.23 -25.99 16 8 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 9 C 0.03 1.68 5.46 84.65 0.46 2.14 16 10 N -0.91 -46.00 13.29 21.45 0.28 -45.71 16 11 Si 0.94 39.25 29.54 68.60 2.03 41.27 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 15 C 0.52 20.21 5.78 87.66 0.51 20.71 16 16 O -0.57 -24.27 14.78 15.34 0.23 -24.04 16 17 C 0.07 2.37 1.82 29.85 0.05 2.43 16 18 H 0.11 3.81 5.25 -2.39 -0.01 3.80 16 19 C -0.17 -4.84 8.79 71.98 0.63 -4.21 16 20 O -0.30 -9.85 9.40 -72.53 -0.68 -10.54 16 21 C 0.15 4.04 6.59 22.62 0.15 4.19 16 22 C -0.22 -5.56 8.20 22.32 0.18 -5.37 16 23 C -0.02 -0.46 9.75 22.52 0.22 -0.24 16 24 C -0.08 -1.69 5.74 -21.30 -0.12 -1.81 16 25 C 0.29 6.62 15.33 88.33 1.35 7.97 16 26 N -0.47 -12.99 18.54 19.00 0.35 -12.64 16 27 C -0.01 -0.24 9.75 22.52 0.22 -0.02 16 28 C -0.16 -3.25 9.97 22.33 0.22 -3.02 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.06 6.39 -2.39 -0.02 1.04 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.97 8.05 -2.38 -0.02 1.95 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.07 2.45 7.33 -2.38 -0.02 2.43 16 37 H 0.07 2.59 8.11 -2.39 -0.02 2.57 16 38 H 0.05 2.06 4.47 -2.39 -0.01 2.05 16 39 H 0.02 1.11 8.00 -2.38 -0.02 1.09 16 40 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 41 H 0.09 2.24 6.75 -2.39 -0.02 2.22 16 42 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.08 2.52 5.95 -2.39 -0.01 2.50 16 44 H 0.14 3.77 5.31 -2.91 -0.02 3.76 16 45 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 46 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 47 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -58.19 390.08 7.47 -50.72 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.98 Total: 22.20 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.15 Total: 3.33 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.24 Total: -82.95 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.46 Total: -34.57 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.27 kcal Total: -58.19 7.47 -50.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920445435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.367 kcal (2) G-P(sol) polarization free energy of solvation -58.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds