Wall clock time and date at job start Tue Mar 31 2020 16:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46692 * 2 1 4 4 C 1.45755 * 117.94648 * 269.97278 * 3 2 1 5 5 C 1.52922 * 110.48665 * 160.92742 * 4 3 2 6 6 C 1.53290 * 108.61018 * 50.77279 * 5 4 3 7 7 C 1.53071 * 108.45711 * 292.37260 * 6 5 4 8 8 H 1.08995 * 109.40397 * 288.93128 * 7 6 5 9 9 N 1.46503 * 109.39526 * 169.09817 * 7 6 5 10 10 C 1.34783 * 119.99335 * 154.82737 * 9 7 6 11 11 O 1.21280 * 120.00393 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99863 * 179.97438 * 10 9 7 13 13 C 1.50697 * 109.47519 * 180.02562 * 12 10 9 14 14 C 1.37633 * 120.13080 * 265.00729 * 13 12 10 15 15 C 1.38621 * 120.24804 * 179.97438 * 14 13 12 16 16 C 1.38649 * 120.50023 * 0.02562 * 15 14 13 17 17 C 1.37593 * 120.25033 * 359.97438 * 16 15 14 18 18 C 1.40703 * 120.12322 * 85.02296 * 13 12 10 19 19 C 1.41387 * 120.24548 * 359.97438 * 18 13 12 20 20 H 1.08005 * 120.00197 * 334.05398 * 19 18 13 21 21 C 1.39944 * 120.00412 * 154.05331 * 19 18 13 22 22 N 1.30828 * 119.99706 * 343.65839 * 21 19 18 23 23 Si 1.86800 * 120.00646 * 163.65379 * 21 19 18 24 24 H 1.48498 * 109.47129 * 89.99768 * 23 21 19 25 25 H 1.48498 * 109.47309 * 210.00091 * 23 21 19 26 26 H 1.48500 * 109.47097 * 330.00235 * 23 21 19 27 27 C 1.33355 * 117.94666 * 89.99946 * 3 2 1 28 28 O 1.21280 * 118.24506 * 2.22392 * 27 3 2 29 29 H 1.08999 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47184 * 299.99899 * 1 2 3 31 31 H 1.09003 * 109.46751 * 60.00242 * 1 2 3 32 32 H 1.08997 * 109.47371 * 240.00599 * 2 1 3 33 33 H 1.08996 * 109.47111 * 119.99577 * 2 1 3 34 34 H 1.08996 * 109.30476 * 281.23980 * 4 3 2 35 35 H 1.09000 * 109.29924 * 40.62491 * 4 3 2 36 36 H 1.08996 * 109.60453 * 170.51532 * 5 4 3 37 37 H 1.09004 * 109.60398 * 290.83850 * 5 4 3 38 38 H 1.09003 * 109.59634 * 172.66692 * 6 5 4 39 39 H 1.08997 * 109.71739 * 52.15712 * 6 5 4 40 40 H 0.96993 * 120.00849 * 334.83348 * 9 7 6 41 41 H 1.09002 * 109.46826 * 60.00331 * 12 10 9 42 42 H 1.08997 * 109.47538 * 300.00892 * 12 10 9 43 43 H 1.07997 * 119.87569 * 0.02562 * 14 13 12 44 44 H 1.07996 * 119.74635 * 180.02562 * 15 14 13 45 45 H 1.07997 * 119.87697 * 179.71821 * 16 15 14 46 46 H 1.08008 * 120.12758 * 179.97438 * 17 16 15 47 47 H 0.96997 * 120.00444 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2465 2.0251 -1.2876 5 6 2.2873 3.5452 -1.1261 6 6 3.2669 3.8914 0.0010 7 6 2.6782 3.3953 1.3240 8 1 1.8271 4.0186 1.5980 9 7 3.6989 3.4773 2.3718 10 6 3.3310 3.5930 3.6633 11 8 2.1551 3.6287 3.9580 12 6 4.3807 3.6768 4.7412 13 6 3.7115 3.7993 6.0858 14 6 3.5083 5.0400 6.6459 15 6 2.8924 5.1555 7.8824 16 6 2.4751 4.0256 8.5690 17 6 2.6680 2.7752 8.0283 18 6 3.2924 2.6457 6.7737 19 6 3.4957 1.3659 6.2081 20 1 3.5690 1.2546 5.1363 21 6 3.6022 0.2434 7.0369 22 7 3.8346 0.3940 8.3155 23 14 3.4123 -1.4702 6.3178 24 1 4.7396 -1.9742 5.8825 25 1 2.8508 -2.3801 7.3483 26 1 2.4956 -1.4184 5.1507 27 6 2.2266 1.9705 1.1780 28 8 2.0410 1.3211 2.1854 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.1952 1.6810 -1.6994 35 1 1.4417 1.7571 -1.9721 36 1 2.6232 4.0029 -2.0565 37 1 1.2922 3.9133 -0.8760 38 1 3.4078 4.9714 0.0441 39 1 4.2242 3.4029 -0.1809 40 1 4.6393 3.4485 2.1362 41 1 5.0107 4.5493 4.5677 42 1 4.9943 2.7761 4.7217 43 1 3.8290 5.9269 6.1197 44 1 2.7366 6.1331 8.3142 45 1 2.0005 4.1270 9.5338 46 1 2.3424 1.8963 8.5651 47 1 3.9087 -0.3840 8.8900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928870641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:53 Heat of formation + Delta-G solvation = -79.736501 kcal Electronic energy + Delta-G solvation = -29067.369351 eV Core-core repulsion = 25213.339945 eV Total energy + Delta-G solvation = -3854.029406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87548 -40.43638 -39.06389 -37.55613 -36.49706 -35.51731 -34.13509 -33.32579 -31.36248 -31.04747 -30.08471 -28.27028 -26.86270 -25.53234 -24.38493 -22.82806 -22.79184 -22.14327 -20.97887 -19.77138 -19.07719 -18.06488 -17.80533 -17.57919 -17.37160 -17.20368 -16.29081 -16.07839 -15.72935 -15.45459 -15.32988 -14.98377 -14.76831 -14.69220 -14.59555 -14.40422 -14.24406 -13.57090 -13.44079 -13.39818 -13.10638 -12.92869 -12.86857 -12.80787 -12.66484 -12.53673 -12.45820 -12.22220 -12.17246 -11.99040 -11.80584 -11.32764 -11.22648 -11.10913 -11.04943 -10.71758 -9.93278 -9.69302 -9.22460 -9.16142 -8.62934 -6.29756 0.96244 1.11338 1.25935 1.39368 1.48085 1.52284 1.77140 2.14013 2.17045 2.45784 2.76102 3.56625 3.65526 3.75965 3.83617 4.00911 4.10593 4.12880 4.21539 4.32685 4.40954 4.42742 4.52601 4.58218 4.61494 4.62685 4.71691 4.79444 4.81431 4.83359 4.98044 5.04991 5.06943 5.08181 5.19160 5.19521 5.29171 5.36168 5.47972 5.54504 5.55972 5.77603 6.03292 6.17778 6.20834 6.42178 6.46105 6.64660 6.75366 6.99003 7.10727 7.22875 7.49869 8.33601 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.004388 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.643538 B = 6379.338481 C = 8083.201676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.103 3.897 5 C -0.127 4.127 6 C -0.116 4.116 7 C 0.138 3.862 8 H 0.090 0.910 9 N -0.713 5.713 10 C 0.521 3.479 11 O -0.563 6.563 12 C -0.068 4.068 13 C -0.187 4.187 14 C -0.089 4.089 15 C -0.240 4.240 16 C -0.117 4.117 17 C -0.195 4.195 18 C 0.095 3.905 19 C -0.477 4.477 20 H 0.060 0.940 21 C 0.040 3.960 22 N -0.823 5.823 23 Si 0.962 3.038 24 H -0.252 1.252 25 H -0.259 1.259 26 H -0.284 1.284 27 C 0.483 3.517 28 O -0.583 6.583 29 H 0.077 0.923 30 H 0.018 0.982 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.417 0.583 41 H 0.120 0.880 42 H 0.088 0.912 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.175 4.000 -24.957 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.335 5.335 4 C -0.018 4.018 5 C -0.165 4.165 6 C -0.154 4.154 7 C 0.029 3.971 8 H 0.108 0.892 9 N -0.368 5.368 10 C 0.310 3.690 11 O -0.440 6.440 12 C -0.107 4.107 13 C -0.189 4.189 14 C -0.107 4.107 15 C -0.259 4.259 16 C -0.135 4.135 17 C -0.215 4.215 18 C 0.093 3.907 19 C -0.507 4.507 20 H 0.078 0.922 21 C -0.174 4.174 22 N -0.450 5.450 23 Si 0.784 3.216 24 H -0.176 1.176 25 H -0.183 1.183 26 H -0.210 1.210 27 C 0.269 3.731 28 O -0.462 6.462 29 H 0.096 0.904 30 H 0.037 0.963 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.148 0.852 37 H 0.085 0.915 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.254 0.746 41 H 0.138 0.862 42 H 0.107 0.893 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.125 0.875 46 H 0.112 0.888 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.305 3.575 -23.996 24.296 hybrid contribution -0.176 -1.240 0.539 1.364 sum 1.129 2.335 -23.457 23.600 Atomic orbital electron populations 1.22031 0.95543 1.02807 1.01285 1.21531 0.94879 0.82922 1.03093 1.47621 1.64931 1.14556 1.06397 1.21821 1.03674 0.93534 0.82775 1.21895 0.99984 0.94289 1.00372 1.21972 1.00168 1.03766 0.89534 1.20856 0.93929 0.91397 0.90920 0.89228 1.45688 1.10007 1.76139 1.04932 1.21134 0.90187 0.73886 0.83842 1.90656 1.21351 1.49354 1.82626 1.20267 0.96109 1.04425 0.89920 1.19554 1.08349 0.93343 0.97680 1.20747 0.98639 0.95862 0.95492 1.20736 1.09942 0.97285 0.97970 1.20947 1.00408 0.93223 0.98963 1.21281 1.04965 0.96166 0.99040 1.17722 0.88229 0.92982 0.91748 1.19539 1.45169 0.92210 0.93813 0.92206 1.26516 0.91681 1.04412 0.94810 1.69865 1.35320 1.33710 1.06125 0.85516 0.79686 0.77659 0.78711 1.17593 1.18327 1.20953 1.21327 0.77611 0.90905 0.83238 1.90838 1.52283 1.65044 1.38025 0.90385 0.96298 0.90206 0.86696 0.93620 0.89367 0.88377 0.85236 0.91455 0.87858 0.88761 0.74592 0.86194 0.89348 0.86037 0.86314 0.87545 0.88774 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 10.23 71.98 0.74 -2.73 16 2 C 0.10 2.25 5.94 86.38 0.51 2.76 16 3 N -0.60 -13.72 2.81 -826.63 -2.32 -16.04 16 4 C 0.10 1.08 6.32 86.49 0.55 1.62 16 5 C -0.13 -1.06 6.02 30.67 0.18 -0.88 16 6 C -0.12 -1.48 5.50 30.72 0.17 -1.31 16 7 C 0.14 3.75 2.70 44.10 0.12 3.87 16 8 H 0.09 2.89 7.57 -2.39 -0.02 2.87 16 9 N -0.71 -21.80 4.96 -446.77 -2.22 -24.02 16 10 C 0.52 22.25 6.89 87.65 0.60 22.86 16 11 O -0.56 -30.48 15.25 -1.79 -0.03 -30.51 16 12 C -0.07 -2.82 5.18 29.10 0.15 -2.67 16 13 C -0.19 -9.69 4.43 -19.41 -0.09 -9.77 16 14 C -0.09 -4.21 9.66 22.22 0.21 -3.99 16 15 C -0.24 -11.42 10.05 22.46 0.23 -11.19 16 16 C -0.12 -6.10 10.02 22.22 0.22 -5.87 16 17 C -0.19 -11.56 8.69 22.73 0.20 -11.37 16 18 C 0.10 5.69 5.56 -21.29 -0.12 5.57 16 19 C -0.48 -28.88 8.14 23.46 0.19 -28.68 16 20 H 0.06 3.72 6.68 -2.91 -0.02 3.70 16 21 C 0.04 2.27 5.16 85.26 0.44 2.71 16 22 N -0.82 -46.94 10.97 21.83 0.24 -46.70 16 23 Si 0.96 44.77 29.59 68.60 2.03 46.80 16 24 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.28 -14.36 7.11 99.48 0.71 -13.65 16 27 C 0.48 16.06 7.19 87.71 0.63 16.69 16 28 O -0.58 -28.00 14.95 -1.79 -0.03 -28.03 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 1.63 8.01 -2.39 -0.02 1.61 16 33 H 0.05 1.44 7.13 -2.39 -0.02 1.42 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.63 8.10 -2.39 -0.02 0.61 16 36 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.07 0.73 8.13 -2.38 -0.02 0.71 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 40 H 0.42 9.21 8.58 -92.71 -0.80 8.41 16 41 H 0.12 3.78 8.05 -2.39 -0.02 3.76 16 42 H 0.09 3.79 7.06 -2.39 -0.02 3.78 16 43 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 44 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 45 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 46 H 0.09 5.84 6.22 -2.91 -0.02 5.82 16 47 H 0.29 14.76 8.30 -92.71 -0.77 13.99 16 Total: -1.00 -91.09 382.50 2.80 -88.29 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.18 Total: 32.59 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 4.94 Total: -22.38 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -4.30 Total: -86.76 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: -0.05 Total: -58.54 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -91.09 2.80 -88.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928870641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.556 kcal (2) G-P(sol) polarization free energy of solvation -91.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds