Wall clock time and date at job start Tue Mar 31 2020 17:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46511 * 109.46773 * 2 1 4 4 C 1.46497 * 119.99893 * 92.34133 * 3 2 1 5 5 C 1.50697 * 109.47429 * 90.33634 * 4 3 2 6 6 H 1.08002 * 120.00158 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99966 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00133 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99781 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47709 * 90.00095 * 9 7 5 11 11 H 1.48504 * 109.46857 * 210.00193 * 9 7 5 12 12 H 1.48502 * 109.47122 * 329.99598 * 9 7 5 13 13 C 1.34769 * 119.99892 * 272.33555 * 3 2 1 14 14 O 1.21282 * 120.00466 * 4.96718 * 13 3 2 15 15 C 1.50700 * 119.99794 * 184.96701 * 13 3 2 16 16 H 1.08998 * 110.43749 * 335.58243 * 15 13 3 17 17 C 1.54631 * 110.48850 * 212.89732 * 15 13 3 18 18 C 1.54477 * 101.76894 * 266.12203 * 17 15 13 19 19 N 1.46763 * 105.47208 * 334.58595 * 18 17 15 20 20 C 1.46501 * 124.34965 * 196.99896 * 19 18 17 21 21 C 1.50699 * 109.46774 * 270.04337 * 20 19 18 22 22 C 1.38238 * 120.00096 * 269.72351 * 21 20 19 23 23 C 1.38230 * 119.99980 * 179.74593 * 22 21 20 24 24 C 1.38238 * 120.00076 * 0.52665 * 23 22 21 25 25 C 1.38229 * 119.99769 * 359.75243 * 24 23 22 26 26 C 1.38231 * 120.00190 * 89.99966 * 21 20 19 27 27 C 1.34420 * 111.30241 * 17.00912 * 19 18 17 28 28 O 1.21285 * 124.94121 * 179.62831 * 27 19 18 29 29 H 1.09001 * 109.47137 * 300.37538 * 1 2 3 30 30 H 1.08989 * 109.47161 * 60.37993 * 1 2 3 31 31 H 1.08999 * 109.46547 * 180.38524 * 1 2 3 32 32 H 1.08994 * 109.47783 * 119.99793 * 2 1 3 33 33 H 1.09002 * 109.47530 * 240.00360 * 2 1 3 34 34 H 1.08999 * 109.46897 * 210.34150 * 4 3 2 35 35 H 1.09004 * 109.46905 * 330.33586 * 4 3 2 36 36 H 0.97003 * 120.00471 * 179.97438 * 8 7 5 37 37 H 1.09005 * 110.96813 * 24.23918 * 17 15 13 38 38 H 1.08995 * 110.97294 * 147.99962 * 17 15 13 39 39 H 1.08998 * 110.24826 * 215.58336 * 18 17 15 40 40 H 1.09000 * 110.24573 * 93.57818 * 18 17 15 41 41 H 1.09000 * 109.47375 * 30.04312 * 20 19 18 42 42 H 1.08997 * 109.47301 * 150.04649 * 20 19 18 43 43 H 1.08007 * 119.99704 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.00003 * 180.29773 * 23 22 21 45 45 H 1.08000 * 120.00053 * 179.76533 * 24 23 22 46 46 H 1.08005 * 119.99958 * 179.97438 * 25 24 23 47 47 H 1.08005 * 119.99816 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3113 2.0547 1.2677 5 6 3.7524 1.8193 1.6402 6 1 4.3868 1.2277 0.9968 7 6 4.2613 2.3602 2.8019 8 7 3.4890 3.0809 3.5851 9 14 6.0478 2.0690 3.2633 10 1 6.8903 3.1472 2.6861 11 1 6.1840 2.0724 4.7420 12 1 6.4895 0.7559 2.7286 13 6 2.1980 2.0325 -1.1662 14 8 1.8711 1.5086 -2.2100 15 6 2.8052 3.4117 -1.1732 16 1 2.6467 3.9023 -0.2128 17 6 2.2103 4.2592 -2.3217 18 6 3.2385 4.0259 -3.4507 19 7 4.4963 3.6923 -2.7719 20 6 5.8158 3.7388 -3.4068 21 6 6.1234 2.3990 -4.0244 22 6 6.7752 1.4301 -3.2846 23 6 7.0527 0.1994 -3.8494 24 6 6.6880 -0.0588 -5.1576 25 6 6.0414 0.9121 -5.8992 26 6 5.7588 2.1409 -5.3325 27 6 4.2820 3.3385 -1.4929 28 8 5.1470 3.0090 -0.7091 29 1 -0.3633 0.5197 0.8866 30 1 -0.3633 0.5079 -0.8933 31 1 -0.3632 -1.0277 0.0069 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.1338 3.1247 1.1602 35 1 1.6642 1.6558 2.0489 36 1 3.8469 3.4611 4.4026 37 1 1.2254 3.8905 -2.6088 38 1 2.1656 5.3128 -2.0463 39 1 3.3591 4.9321 -4.0443 40 1 2.9212 3.1981 -4.0848 41 1 5.8195 4.5055 -4.1815 42 1 6.5713 3.9755 -2.6577 43 1 7.0637 1.6332 -2.2638 44 1 7.5577 -0.5593 -3.2699 45 1 6.9082 -1.0190 -5.6001 46 1 5.7568 0.7106 -6.9214 47 1 5.2531 2.8993 -5.9119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:32 Heat of formation + Delta-G solvation = -36.089263 kcal Electronic energy + Delta-G solvation = -29645.222358 eV Core-core repulsion = 25793.085639 eV Total energy + Delta-G solvation = -3852.136719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59910 -39.15080 -38.25888 -35.95767 -35.09547 -33.52808 -32.59453 -30.95194 -30.81453 -29.99837 -27.50676 -26.82186 -26.07805 -23.30950 -22.93956 -22.50113 -21.72179 -21.22150 -19.44571 -18.22842 -17.07827 -16.73274 -16.42415 -16.21708 -15.60114 -15.42418 -15.11693 -14.75761 -14.64889 -14.24691 -13.92111 -13.47161 -13.34211 -13.25045 -13.10206 -12.94909 -12.56573 -12.54016 -12.27460 -12.17730 -11.99082 -11.85448 -11.62612 -11.46960 -11.32104 -11.02882 -10.95662 -10.87782 -10.79927 -10.63390 -10.37754 -9.95351 -9.62036 -9.29208 -9.03628 -8.83250 -8.70651 -8.40172 -8.34032 -7.70818 -6.01446 -4.03652 1.34581 1.49207 2.88143 3.25422 3.39435 3.44348 3.46270 3.51273 3.92715 4.02380 4.53637 4.71191 4.74898 4.84230 4.96110 5.05114 5.09135 5.16923 5.27238 5.33859 5.38277 5.45933 5.53236 5.63385 5.68963 5.71486 5.73969 5.82259 5.89465 5.99139 6.04329 6.05255 6.12888 6.25214 6.26968 6.41483 6.49923 6.58960 6.65081 6.67792 6.79324 6.84305 7.07390 7.21501 7.43421 7.55190 7.96563 8.18561 8.31829 8.69910 8.88539 9.07105 9.63491 11.06354 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.005002 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.654241 B = 5595.862768 C = 6504.381400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 N -0.586 5.586 4 C 0.235 3.765 5 C -0.510 4.510 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.902 5.902 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.535 3.465 14 O -0.568 6.568 15 C -0.145 4.145 16 H 0.134 0.866 17 C -0.115 4.115 18 C 0.111 3.889 19 N -0.621 5.621 20 C 0.170 3.830 21 C -0.106 4.106 22 C -0.093 4.093 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.105 4.105 27 C 0.536 3.464 28 O -0.481 6.481 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.261 0.739 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.127 0.873 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 1.062 -16.126 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.316 5.316 4 C 0.115 3.885 5 C -0.549 4.549 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.321 3.679 14 O -0.449 6.449 15 C -0.169 4.169 16 H 0.152 0.848 17 C -0.154 4.154 18 C -0.012 4.012 19 N -0.357 5.357 20 C 0.048 3.952 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.123 4.123 27 C 0.321 3.679 28 O -0.352 6.352 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.145 0.855 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.740 0.706 -16.019 16.052 hybrid contribution 0.948 -0.140 0.476 1.070 sum 1.688 0.566 -15.543 15.645 Atomic orbital electron populations 1.22099 0.96746 1.01239 1.01983 1.21244 0.93461 0.83494 1.02402 1.48242 1.62089 1.13315 1.07916 1.19546 0.97120 0.92720 0.79086 1.21404 0.94872 1.32489 1.06137 0.91767 1.24818 0.97739 0.94864 0.96088 1.69925 1.35776 1.34898 1.13603 0.86472 0.85422 0.78864 0.76503 1.20519 1.21731 1.20097 1.19571 0.78320 0.86301 0.83659 1.90591 1.53436 1.68779 1.32068 1.22114 0.94925 0.96750 1.03141 0.84792 1.22506 0.99475 0.99781 0.93588 1.21995 0.83288 1.00450 0.95499 1.48251 1.06416 1.69301 1.11725 1.20172 0.84464 0.93300 0.97274 1.20283 0.98911 0.97211 0.94299 1.21238 0.97096 0.93074 0.99795 1.21170 1.00447 0.97013 0.95357 1.21133 0.98959 0.99035 0.94634 1.21066 0.99739 0.93846 0.99813 1.20979 0.99432 0.97187 0.94718 1.20128 0.89912 0.76517 0.81312 1.90823 1.49033 1.44544 1.50798 0.92561 0.92690 0.92467 0.90284 0.91484 0.94695 0.94462 0.92912 0.88935 0.89750 0.91007 0.90813 0.89800 0.89231 0.85546 0.86175 0.86385 0.86324 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.23 37.16 0.38 -2.22 16 2 C 0.12 2.23 6.06 -4.04 -0.02 2.21 16 3 N -0.59 -12.68 2.46 -175.06 -0.43 -13.11 16 4 C 0.23 5.70 4.88 -5.20 -0.03 5.67 16 5 C -0.51 -13.91 8.30 -34.44 -0.29 -14.20 16 6 H 0.06 1.87 7.44 -52.49 -0.39 1.48 16 7 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 8 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 9 Si 0.90 22.63 29.54 -169.99 -5.02 17.61 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.53 11.24 6.66 -10.99 -0.07 11.16 16 14 O -0.57 -12.40 15.74 5.56 0.09 -12.31 16 15 C -0.15 -2.74 2.87 -91.78 -0.26 -3.00 16 16 H 0.13 2.71 5.72 -51.93 -0.30 2.41 16 17 C -0.12 -1.60 6.41 -25.10 -0.16 -1.76 16 18 C 0.11 1.44 7.13 -3.12 -0.02 1.42 16 19 N -0.62 -9.77 2.92 -173.79 -0.51 -10.28 16 20 C 0.17 2.28 6.06 -5.19 -0.03 2.25 16 21 C -0.11 -1.50 5.46 -104.62 -0.57 -2.07 16 22 C -0.09 -1.46 9.70 -39.58 -0.38 -1.84 16 23 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 24 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 25 C -0.13 -1.50 10.05 -39.59 -0.40 -1.90 16 26 C -0.10 -1.29 9.70 -39.58 -0.38 -1.68 16 27 C 0.54 10.74 7.33 -10.86 -0.08 10.66 16 28 O -0.48 -11.58 16.11 5.55 0.09 -11.49 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.91 8.14 -51.94 -0.42 0.49 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.49 8.05 -51.93 -0.42 1.08 16 33 H 0.07 1.30 7.57 -51.93 -0.39 0.91 16 34 H 0.04 0.87 5.91 -51.93 -0.31 0.56 16 35 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 37 H 0.09 1.25 7.63 -51.93 -0.40 0.86 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 42 H 0.09 1.27 7.87 -51.93 -0.41 0.86 16 43 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 44 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 46 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 47 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -33.05 391.55 -9.60 -42.65 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.24 Total: 3.57 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -3.22 Total: 2.48 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.20 Total: -48.42 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.18 Total: -23.80 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.05 -9.60 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.557 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds