Wall clock time and date at job start Tue Mar 31 2020 17:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46511 * 109.46773 * 2 1 4 4 C 1.46497 * 119.99893 * 92.34133 * 3 2 1 5 5 C 1.50697 * 109.47429 * 90.33634 * 4 3 2 6 6 H 1.08002 * 120.00158 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99966 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00133 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99781 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47709 * 90.00095 * 9 7 5 11 11 H 1.48504 * 109.46857 * 210.00193 * 9 7 5 12 12 H 1.48502 * 109.47122 * 329.99598 * 9 7 5 13 13 C 1.34769 * 119.99892 * 272.33555 * 3 2 1 14 14 O 1.21282 * 120.00466 * 4.96718 * 13 3 2 15 15 C 1.50700 * 119.99794 * 184.96701 * 13 3 2 16 16 H 1.08998 * 110.43749 * 335.58243 * 15 13 3 17 17 C 1.54631 * 110.48850 * 212.89732 * 15 13 3 18 18 C 1.54477 * 101.76894 * 266.12203 * 17 15 13 19 19 N 1.46763 * 105.47208 * 334.58595 * 18 17 15 20 20 C 1.46501 * 124.34965 * 196.99896 * 19 18 17 21 21 C 1.50699 * 109.46774 * 270.04337 * 20 19 18 22 22 C 1.38238 * 120.00096 * 269.72351 * 21 20 19 23 23 C 1.38230 * 119.99980 * 179.74593 * 22 21 20 24 24 C 1.38238 * 120.00076 * 0.52665 * 23 22 21 25 25 C 1.38229 * 119.99769 * 359.75243 * 24 23 22 26 26 C 1.38231 * 120.00190 * 89.99966 * 21 20 19 27 27 C 1.34420 * 111.30241 * 17.00912 * 19 18 17 28 28 O 1.21285 * 124.94121 * 179.62831 * 27 19 18 29 29 H 1.09001 * 109.47137 * 300.37538 * 1 2 3 30 30 H 1.08989 * 109.47161 * 60.37993 * 1 2 3 31 31 H 1.08999 * 109.46547 * 180.38524 * 1 2 3 32 32 H 1.08994 * 109.47783 * 119.99793 * 2 1 3 33 33 H 1.09002 * 109.47530 * 240.00360 * 2 1 3 34 34 H 1.08999 * 109.46897 * 210.34150 * 4 3 2 35 35 H 1.09004 * 109.46905 * 330.33586 * 4 3 2 36 36 H 0.97003 * 120.00471 * 179.97438 * 8 7 5 37 37 H 1.09005 * 110.96813 * 24.23918 * 17 15 13 38 38 H 1.08995 * 110.97294 * 147.99962 * 17 15 13 39 39 H 1.08998 * 110.24826 * 215.58336 * 18 17 15 40 40 H 1.09000 * 110.24573 * 93.57818 * 18 17 15 41 41 H 1.09000 * 109.47375 * 30.04312 * 20 19 18 42 42 H 1.08997 * 109.47301 * 150.04649 * 20 19 18 43 43 H 1.08007 * 119.99704 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.00003 * 180.29773 * 23 22 21 45 45 H 1.08000 * 120.00053 * 179.76533 * 24 23 22 46 46 H 1.08005 * 119.99958 * 179.97438 * 25 24 23 47 47 H 1.08005 * 119.99816 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3113 2.0547 1.2677 5 6 3.7524 1.8193 1.6402 6 1 4.3868 1.2277 0.9968 7 6 4.2613 2.3602 2.8019 8 7 3.4890 3.0809 3.5851 9 14 6.0478 2.0690 3.2633 10 1 6.8903 3.1472 2.6861 11 1 6.1840 2.0724 4.7420 12 1 6.4895 0.7559 2.7286 13 6 2.1980 2.0325 -1.1662 14 8 1.8711 1.5086 -2.2100 15 6 2.8052 3.4117 -1.1732 16 1 2.6467 3.9023 -0.2128 17 6 2.2103 4.2592 -2.3217 18 6 3.2385 4.0259 -3.4507 19 7 4.4963 3.6923 -2.7719 20 6 5.8158 3.7388 -3.4068 21 6 6.1234 2.3990 -4.0244 22 6 6.7752 1.4301 -3.2846 23 6 7.0527 0.1994 -3.8494 24 6 6.6880 -0.0588 -5.1576 25 6 6.0414 0.9121 -5.8992 26 6 5.7588 2.1409 -5.3325 27 6 4.2820 3.3385 -1.4929 28 8 5.1470 3.0090 -0.7091 29 1 -0.3633 0.5197 0.8866 30 1 -0.3633 0.5079 -0.8933 31 1 -0.3632 -1.0277 0.0069 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.1338 3.1247 1.1602 35 1 1.6642 1.6558 2.0489 36 1 3.8469 3.4611 4.4026 37 1 1.2254 3.8905 -2.6088 38 1 2.1656 5.3128 -2.0463 39 1 3.3591 4.9321 -4.0443 40 1 2.9212 3.1981 -4.0848 41 1 5.8195 4.5055 -4.1815 42 1 6.5713 3.9755 -2.6577 43 1 7.0637 1.6332 -2.2638 44 1 7.5577 -0.5593 -3.2699 45 1 6.9082 -1.0190 -5.6001 46 1 5.7568 0.7106 -6.9214 47 1 5.2531 2.8993 -5.9119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930464553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:31 Heat of formation + Delta-G solvation = -54.703093 kcal Electronic energy + Delta-G solvation = -29646.029514 eV Core-core repulsion = 25793.085639 eV Total energy + Delta-G solvation = -3852.943876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.03632 -40.39094 -39.66573 -37.49158 -36.78872 -34.85179 -34.51303 -32.39323 -31.82182 -31.29698 -29.10089 -28.53260 -27.20416 -24.96834 -24.70360 -23.55757 -22.84016 -22.47499 -20.82966 -19.79395 -18.69553 -18.42663 -17.92668 -17.59359 -17.11701 -16.64317 -16.58071 -16.28930 -15.98421 -15.77412 -15.38104 -14.81129 -14.63496 -14.55674 -14.41301 -14.32363 -14.14678 -13.90033 -13.83315 -13.55898 -13.34960 -13.22168 -13.15670 -13.00653 -12.76937 -12.68947 -12.45030 -12.22358 -12.13544 -12.02740 -11.89385 -11.79633 -11.65364 -10.91444 -10.69957 -10.49954 -9.85944 -9.80251 -9.60909 -9.50946 -8.18167 -6.24592 0.31406 0.46208 1.29881 1.32636 1.37510 1.45942 1.76915 2.14005 2.32063 2.47592 2.93053 3.14338 3.45485 3.52789 3.66979 3.82182 3.89249 4.04509 4.11049 4.19248 4.22829 4.28603 4.30829 4.37780 4.51011 4.52658 4.57705 4.66986 4.70787 4.73497 4.79331 4.94598 4.97687 5.02228 5.05357 5.10835 5.14549 5.19858 5.30743 5.51290 5.56844 5.60874 5.66142 5.68218 5.83239 6.07353 6.08280 6.11127 6.51730 6.83979 7.22297 7.24854 7.45010 8.88292 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.005002 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.654241 B = 5595.862768 C = 6504.381400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.110 3.890 3 N -0.595 5.595 4 C 0.252 3.748 5 C -0.508 4.508 6 H 0.039 0.961 7 C 0.029 3.971 8 N -0.922 5.922 9 Si 0.943 3.057 10 H -0.288 1.288 11 H -0.275 1.275 12 H -0.281 1.281 13 C 0.532 3.468 14 O -0.576 6.576 15 C -0.152 4.152 16 H 0.113 0.887 17 C -0.105 4.105 18 C 0.109 3.891 19 N -0.610 5.610 20 C 0.166 3.834 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.103 4.103 27 C 0.524 3.476 28 O -0.539 6.539 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.144 0.856 46 H 0.153 0.847 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 1.707 -19.150 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 N -0.325 5.325 4 C 0.132 3.868 5 C -0.547 4.547 6 H 0.057 0.943 7 C -0.171 4.171 8 N -0.563 5.563 9 Si 0.771 3.229 10 H -0.214 1.214 11 H -0.200 1.200 12 H -0.206 1.206 13 C 0.319 3.681 14 O -0.458 6.458 15 C -0.176 4.176 16 H 0.131 0.869 17 C -0.143 4.143 18 C -0.012 4.012 19 N -0.344 5.344 20 C 0.045 3.955 21 C -0.120 4.120 22 C -0.145 4.145 23 C -0.158 4.158 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.121 4.121 27 C 0.309 3.691 28 O -0.414 6.414 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.149 0.851 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.141 0.859 45 H 0.162 0.838 46 H 0.170 0.830 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.292 1.354 -19.091 19.142 hybrid contribution 1.281 -0.397 1.310 1.874 sum 0.989 0.957 -17.782 17.835 Atomic orbital electron populations 1.21978 0.93959 1.03124 1.01597 1.21418 0.95737 0.82188 1.01877 1.48276 1.62599 1.14260 1.07334 1.19149 0.95130 0.92536 0.80014 1.21417 0.96006 1.31712 1.05541 0.94315 1.25333 1.00389 0.95012 0.96328 1.69966 1.36781 1.35561 1.13988 0.85789 0.82147 0.78034 0.76941 1.21419 1.19977 1.20621 1.19942 0.77865 0.87079 0.83206 1.90564 1.53869 1.69344 1.31997 1.22152 0.94935 0.96108 1.04434 0.86872 1.22619 0.99682 1.00450 0.91554 1.22270 0.81331 1.02528 0.95103 1.48358 1.08352 1.67242 1.10427 1.20407 0.82866 0.94475 0.97744 1.20394 0.99281 0.97013 0.95324 1.21206 0.99472 0.94929 0.98932 1.21343 1.01184 0.96601 0.96677 1.21485 0.98280 1.00508 0.93732 1.21537 0.98345 0.93240 1.01196 1.21350 0.98660 0.98284 0.93792 1.20439 0.89815 0.76280 0.82533 1.90782 1.50487 1.47352 1.52801 0.92683 0.93174 0.89460 0.90740 0.92058 0.95250 0.95344 0.92610 0.88313 0.86750 0.85886 0.91310 0.85104 0.91212 0.88913 0.85917 0.83792 0.82950 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 10.23 71.98 0.74 -3.86 16 2 C 0.11 4.25 6.06 86.38 0.52 4.77 16 3 N -0.60 -26.40 2.46 -826.15 -2.03 -28.44 16 4 C 0.25 12.67 4.88 85.63 0.42 13.09 16 5 C -0.51 -28.81 8.30 25.60 0.21 -28.60 16 6 H 0.04 2.37 7.44 -2.91 -0.02 2.35 16 7 C 0.03 1.63 5.46 84.66 0.46 2.10 16 8 N -0.92 -53.54 13.29 21.45 0.28 -53.25 16 9 Si 0.94 47.80 29.54 68.60 2.03 49.83 16 10 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 11 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 13 C 0.53 22.59 6.66 87.66 0.58 23.17 16 14 O -0.58 -24.91 15.74 -3.04 -0.05 -24.96 16 15 C -0.15 -5.78 2.87 -11.55 -0.03 -5.81 16 16 H 0.11 4.74 5.72 -2.39 -0.01 4.72 16 17 C -0.11 -2.66 6.41 31.65 0.20 -2.45 16 18 C 0.11 2.46 7.13 86.83 0.62 3.07 16 19 N -0.61 -18.47 2.92 -822.32 -2.40 -20.87 16 20 C 0.17 4.27 6.06 85.63 0.52 4.79 16 21 C -0.12 -3.30 5.46 -19.87 -0.11 -3.41 16 22 C -0.13 -4.18 9.70 22.27 0.22 -3.96 16 23 C -0.14 -4.02 10.05 22.27 0.22 -3.79 16 24 C -0.12 -2.81 10.05 22.27 0.22 -2.58 16 25 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 26 C -0.10 -2.22 9.70 22.27 0.22 -2.00 16 27 C 0.52 21.51 7.33 87.90 0.64 22.16 16 28 O -0.54 -27.56 16.11 -3.04 -0.05 -27.61 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 2.89 8.05 -2.39 -0.02 2.87 16 33 H 0.06 2.41 7.57 -2.39 -0.02 2.39 16 34 H 0.03 1.52 5.91 -2.39 -0.01 1.51 16 35 H 0.03 1.47 8.07 -2.38 -0.02 1.46 16 36 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.10 2.41 7.63 -2.38 -0.02 2.39 16 38 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.13 2.10 8.09 -2.39 -0.02 2.08 16 42 H 0.07 2.07 7.87 -2.39 -0.02 2.05 16 43 H 0.09 3.58 8.06 -2.91 -0.02 3.55 16 44 H 0.12 3.25 8.06 -2.91 -0.02 3.22 16 45 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 46 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 47 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -75.73 391.55 4.62 -71.11 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.95 Total: 19.85 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 5.88 Total: 14.34 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -4.14 Total: -102.56 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -0.10 Total: -52.57 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -75.73 4.62 -71.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.402 kcal (2) G-P(sol) polarization free energy of solvation -75.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds