Wall clock time and date at job start Tue Mar 31 2020 15:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.50699 * 109.46858 * 120.00172 * 2 1 3 5 5 H 1.08000 * 120.00041 * 119.99899 * 4 2 1 6 6 C 1.37881 * 120.00218 * 299.99725 * 4 2 1 7 7 N 1.31518 * 119.99349 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00253 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46948 * 59.99737 * 8 6 4 10 10 H 1.48501 * 109.47040 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46946 * 300.00030 * 8 6 4 12 12 N 1.46500 * 109.46662 * 239.99914 * 2 1 3 13 13 C 1.46499 * 120.00018 * 303.26842 * 12 2 1 14 14 C 1.34779 * 119.99771 * 123.00091 * 12 2 1 15 15 O 1.21282 * 119.99992 * 185.28112 * 14 12 2 16 16 C 1.50694 * 119.99799 * 5.28506 * 14 12 2 17 17 H 1.08998 * 110.43888 * 38.51784 * 16 14 12 18 18 C 1.54631 * 110.48599 * 161.20474 * 16 14 12 19 19 C 1.54486 * 101.76531 * 143.47083 * 18 16 14 20 20 N 1.46758 * 105.47514 * 334.58265 * 19 18 16 21 21 C 1.46496 * 124.35178 * 197.03704 * 20 19 18 22 22 C 1.50706 * 109.46817 * 269.95233 * 21 20 19 23 23 C 1.38233 * 120.00250 * 269.72426 * 22 21 20 24 24 C 1.38231 * 120.00392 * 179.74738 * 23 22 21 25 25 C 1.38235 * 119.99406 * 0.52969 * 24 23 22 26 26 C 1.38233 * 120.00551 * 359.74461 * 25 24 23 27 27 C 1.38235 * 119.99702 * 90.00136 * 22 21 20 28 28 C 1.34427 * 111.30025 * 17.01797 * 20 19 18 29 29 O 1.21281 * 124.94547 * 179.62619 * 28 20 19 30 30 H 1.08996 * 109.46952 * 300.00237 * 1 2 3 31 31 H 1.09000 * 109.46790 * 59.99558 * 1 2 3 32 32 H 1.09000 * 109.47516 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99512 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47088 * 94.75968 * 13 12 2 35 35 H 1.09005 * 109.47459 * 214.75281 * 13 12 2 36 36 H 1.08997 * 109.47726 * 334.76140 * 13 12 2 37 37 H 1.08997 * 110.97114 * 261.59094 * 18 16 14 38 38 H 1.09005 * 110.96903 * 25.35653 * 18 16 14 39 39 H 1.08996 * 110.24565 * 215.58109 * 19 18 16 40 40 H 1.09001 * 110.24045 * 93.58463 * 19 18 16 41 41 H 1.08996 * 109.47270 * 29.95126 * 21 20 19 42 42 H 1.08997 * 109.47452 * 149.95550 * 21 20 19 43 43 H 1.08002 * 119.99798 * 0.02562 * 23 22 21 44 44 H 1.07993 * 120.00615 * 180.29617 * 24 23 22 45 45 H 1.08002 * 120.00021 * 179.77024 * 25 24 23 46 46 H 1.08001 * 120.00646 * 180.02562 * 26 25 24 47 47 H 1.07995 * 120.00142 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8302 2.6033 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1191 4.0077 10 1 1.8278 -0.4193 5.2205 11 1 1.8279 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6062 -2.0706 -1.4647 14 6 2.8422 -0.0546 -2.0524 15 8 3.1698 -0.5906 -3.0898 16 6 3.3565 1.3225 -1.7206 17 1 3.5823 1.3983 -0.6569 18 6 4.6078 1.6514 -2.5673 19 6 4.4121 3.1582 -2.8464 20 7 2.9654 3.3884 -2.7568 21 6 2.2819 4.5698 -3.2889 22 6 2.2292 5.6396 -2.2287 23 6 1.1546 5.7009 -1.3613 24 6 1.1088 6.6789 -0.3855 25 6 2.1324 7.6024 -0.2842 26 6 3.2043 7.5447 -1.1552 27 6 3.2528 6.5631 -2.1274 28 6 2.3481 2.3756 -2.1242 29 8 1.1561 2.3146 -1.9088 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.7096 1.1619 3.4844 34 1 0.7433 -2.0690 -2.1308 35 1 2.4278 -2.6100 -1.9360 36 1 1.3407 -2.5596 -0.5275 37 1 5.5209 1.4754 -1.9987 38 1 4.6119 1.0801 -3.4956 39 1 4.7725 3.4068 -3.8445 40 1 4.9356 3.7517 -2.0968 41 1 2.8255 4.9443 -4.1562 42 1 1.2677 4.3007 -3.5841 43 1 0.3530 4.9818 -1.4431 44 1 0.2717 6.7239 0.2952 45 1 2.0949 8.3689 0.4758 46 1 4.0042 8.2660 -1.0757 47 1 4.0904 6.5178 -2.8076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931941610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:39 Heat of formation + Delta-G solvation = -35.127925 kcal Electronic energy + Delta-G solvation = -29392.394831 eV Core-core repulsion = 25540.299799 eV Total energy + Delta-G solvation = -3852.095033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69847 -39.20116 -38.27908 -36.20412 -35.39309 -33.55665 -32.59679 -30.86985 -30.62852 -29.04235 -28.21714 -26.31434 -25.66005 -25.18319 -22.64305 -21.95390 -21.74674 -21.13870 -19.60177 -18.04757 -17.10421 -16.84985 -16.50043 -16.25287 -15.83274 -15.44568 -15.04961 -14.94842 -14.64871 -14.25625 -13.97363 -13.58447 -13.38219 -13.30703 -13.07610 -12.79257 -12.60737 -12.54689 -12.30674 -12.02283 -11.93754 -11.68317 -11.47440 -11.25575 -11.21687 -11.04181 -10.95926 -10.89023 -10.75891 -10.57962 -10.18822 -10.10915 -9.50790 -9.25624 -9.07186 -8.88912 -8.79056 -8.56768 -8.45719 -7.57827 -6.09858 -4.20190 1.27655 1.43466 2.83799 3.04853 3.25517 3.30894 3.32258 3.41069 3.89627 4.02848 4.35442 4.57796 4.64455 4.75809 4.86521 5.00490 5.08288 5.09908 5.19260 5.22469 5.25671 5.44221 5.46851 5.55608 5.64293 5.67102 5.77426 5.98263 6.01549 6.07215 6.18366 6.26446 6.29487 6.44275 6.52748 6.54858 6.59683 6.66555 6.72307 7.01494 7.03646 7.15112 7.24861 7.32447 7.53403 7.73311 7.99697 8.21631 8.47722 8.48185 8.79742 8.99585 9.47451 10.93615 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.004516 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.642835 B = 6198.794907 C = 7732.405092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.260 3.740 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.579 5.579 13 C 0.096 3.904 14 C 0.529 3.471 15 O -0.573 6.573 16 C -0.146 4.146 17 H 0.137 0.863 18 C -0.119 4.119 19 C 0.106 3.894 20 N -0.619 5.619 21 C 0.170 3.830 22 C -0.110 4.110 23 C -0.091 4.091 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.128 4.128 27 C -0.107 4.107 28 C 0.536 3.464 29 O -0.498 6.498 30 H 0.090 0.910 31 H 0.023 0.977 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.686 11.723 -8.792 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.159 3.841 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.307 5.307 13 C -0.047 4.047 14 C 0.315 3.685 15 O -0.455 6.455 16 C -0.170 4.170 17 H 0.155 0.845 18 C -0.157 4.157 19 C -0.017 4.017 20 N -0.354 5.354 21 C 0.048 3.952 22 C -0.111 4.111 23 C -0.110 4.110 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.146 4.146 27 C -0.126 4.126 28 C 0.322 3.678 29 O -0.371 6.371 30 H 0.108 0.892 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.033 11.557 -9.060 15.524 hybrid contribution 0.331 -0.340 1.264 1.350 sum 5.364 11.217 -7.796 14.675 Atomic orbital electron populations 1.21986 0.97564 0.99111 1.01399 1.19048 0.92015 0.93064 0.79951 0.92762 1.21394 1.32261 1.13427 0.90401 0.92165 1.24893 0.94804 0.94942 0.98897 1.69901 1.35864 1.22410 1.23868 0.86590 0.79187 0.79800 0.82043 1.20233 1.21196 1.20164 1.48211 1.44586 1.13495 1.24424 1.21403 0.98923 0.83176 1.01183 1.19586 0.79157 0.86311 0.83468 1.90574 1.61234 1.68219 1.25505 1.22104 0.96532 0.93943 1.04418 0.84542 1.22615 0.96821 0.94436 1.01847 1.22087 0.80815 0.96804 1.01974 1.48203 1.08346 1.19919 1.58909 1.20200 0.98946 0.82727 0.93326 1.20263 0.95287 0.96799 0.98750 1.21248 0.98171 0.97422 0.94115 1.21210 0.99028 0.95216 0.98254 1.21169 0.94424 0.99062 0.98987 1.21080 0.98446 0.98948 0.96093 1.20986 0.97866 0.95055 0.98685 1.20272 0.88277 0.82433 0.76849 1.90773 1.14377 1.78009 1.53953 0.89160 0.95802 0.95596 0.92621 0.94120 0.92518 0.90331 0.89077 0.88196 0.90399 0.91230 0.89648 0.89198 0.85404 0.85951 0.86299 0.86300 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.90 37.16 0.33 -3.21 16 2 C 0.26 6.44 1.82 -69.08 -0.13 6.31 16 3 H 0.05 1.44 4.73 -51.93 -0.25 1.19 16 4 C -0.54 -14.07 8.01 -34.44 -0.28 -14.35 16 5 H 0.06 1.58 7.64 -52.49 -0.40 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.24 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.58 -13.14 2.75 -175.26 -0.48 -13.63 16 13 C 0.10 1.96 9.22 59.85 0.55 2.51 16 14 C 0.53 11.44 6.78 -10.99 -0.07 11.37 16 15 O -0.57 -13.01 15.28 5.56 0.08 -12.92 16 16 C -0.15 -2.69 2.33 -91.78 -0.21 -2.90 16 17 H 0.14 2.66 6.92 -51.93 -0.36 2.30 16 18 C -0.12 -1.62 6.61 -25.09 -0.17 -1.79 16 19 C 0.11 1.20 7.35 -3.12 -0.02 1.18 16 20 N -0.62 -8.91 2.92 -173.78 -0.51 -9.41 16 21 C 0.17 2.07 6.06 -5.19 -0.03 2.04 16 22 C -0.11 -1.40 5.46 -104.62 -0.57 -1.97 16 23 C -0.09 -1.30 9.70 -39.59 -0.38 -1.68 16 24 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 25 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 26 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 27 C -0.11 -1.17 9.70 -39.58 -0.38 -1.55 16 28 C 0.54 10.08 7.07 -10.85 -0.08 10.00 16 29 O -0.50 -11.07 15.49 5.56 0.09 -10.98 16 30 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 31 H 0.02 0.58 7.49 -51.93 -0.39 0.19 16 32 H 0.02 0.61 7.53 -51.93 -0.39 0.21 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.09 7.66 -51.93 -0.40 0.69 16 36 H 0.08 1.58 7.26 -51.93 -0.38 1.20 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.46 6.89 -51.93 -0.36 1.10 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 42 H 0.09 1.18 7.87 -51.93 -0.41 0.77 16 43 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 45 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 382.39 15.07 5.76 5.76 Total: -1.00 -31.99 382.39 -9.18 -41.18 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.00 Total: 5.88 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.73 Total: 2.23 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.36 Total: -46.66 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.99 -9.18 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.047 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds