Wall clock time and date at job start Tue Mar 31 2020 15:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.50699 * 109.46858 * 120.00172 * 2 1 3 5 5 H 1.08000 * 120.00041 * 119.99899 * 4 2 1 6 6 C 1.37881 * 120.00218 * 299.99725 * 4 2 1 7 7 N 1.31518 * 119.99349 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00253 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46948 * 59.99737 * 8 6 4 10 10 H 1.48501 * 109.47040 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46946 * 300.00030 * 8 6 4 12 12 N 1.46500 * 109.46662 * 239.99914 * 2 1 3 13 13 C 1.46499 * 120.00018 * 303.26842 * 12 2 1 14 14 C 1.34779 * 119.99771 * 123.00091 * 12 2 1 15 15 O 1.21282 * 119.99992 * 185.28112 * 14 12 2 16 16 C 1.50694 * 119.99799 * 5.28506 * 14 12 2 17 17 H 1.08998 * 110.43888 * 38.51784 * 16 14 12 18 18 C 1.54631 * 110.48599 * 161.20474 * 16 14 12 19 19 C 1.54486 * 101.76531 * 143.47083 * 18 16 14 20 20 N 1.46758 * 105.47514 * 334.58265 * 19 18 16 21 21 C 1.46496 * 124.35178 * 197.03704 * 20 19 18 22 22 C 1.50706 * 109.46817 * 269.95233 * 21 20 19 23 23 C 1.38233 * 120.00250 * 269.72426 * 22 21 20 24 24 C 1.38231 * 120.00392 * 179.74738 * 23 22 21 25 25 C 1.38235 * 119.99406 * 0.52969 * 24 23 22 26 26 C 1.38233 * 120.00551 * 359.74461 * 25 24 23 27 27 C 1.38235 * 119.99702 * 90.00136 * 22 21 20 28 28 C 1.34427 * 111.30025 * 17.01797 * 20 19 18 29 29 O 1.21281 * 124.94547 * 179.62619 * 28 20 19 30 30 H 1.08996 * 109.46952 * 300.00237 * 1 2 3 31 31 H 1.09000 * 109.46790 * 59.99558 * 1 2 3 32 32 H 1.09000 * 109.47516 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99512 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47088 * 94.75968 * 13 12 2 35 35 H 1.09005 * 109.47459 * 214.75281 * 13 12 2 36 36 H 1.08997 * 109.47726 * 334.76140 * 13 12 2 37 37 H 1.08997 * 110.97114 * 261.59094 * 18 16 14 38 38 H 1.09005 * 110.96903 * 25.35653 * 18 16 14 39 39 H 1.08996 * 110.24565 * 215.58109 * 19 18 16 40 40 H 1.09001 * 110.24045 * 93.58463 * 19 18 16 41 41 H 1.08996 * 109.47270 * 29.95126 * 21 20 19 42 42 H 1.08997 * 109.47452 * 149.95550 * 21 20 19 43 43 H 1.08002 * 119.99798 * 0.02562 * 23 22 21 44 44 H 1.07993 * 120.00615 * 180.29617 * 24 23 22 45 45 H 1.08002 * 120.00021 * 179.77024 * 25 24 23 46 46 H 1.08001 * 120.00646 * 180.02562 * 26 25 24 47 47 H 1.07995 * 120.00142 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8302 2.6033 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1191 4.0077 10 1 1.8278 -0.4193 5.2205 11 1 1.8279 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6062 -2.0706 -1.4647 14 6 2.8422 -0.0546 -2.0524 15 8 3.1698 -0.5906 -3.0898 16 6 3.3565 1.3225 -1.7206 17 1 3.5823 1.3983 -0.6569 18 6 4.6078 1.6514 -2.5673 19 6 4.4121 3.1582 -2.8464 20 7 2.9654 3.3884 -2.7568 21 6 2.2819 4.5698 -3.2889 22 6 2.2292 5.6396 -2.2287 23 6 1.1546 5.7009 -1.3613 24 6 1.1088 6.6789 -0.3855 25 6 2.1324 7.6024 -0.2842 26 6 3.2043 7.5447 -1.1552 27 6 3.2528 6.5631 -2.1274 28 6 2.3481 2.3756 -2.1242 29 8 1.1561 2.3146 -1.9088 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.7096 1.1619 3.4844 34 1 0.7433 -2.0690 -2.1308 35 1 2.4278 -2.6100 -1.9360 36 1 1.3407 -2.5596 -0.5275 37 1 5.5209 1.4754 -1.9987 38 1 4.6119 1.0801 -3.4956 39 1 4.7725 3.4068 -3.8445 40 1 4.9356 3.7517 -2.0968 41 1 2.8255 4.9443 -4.1562 42 1 1.2677 4.3007 -3.5841 43 1 0.3530 4.9818 -1.4431 44 1 0.2717 6.7239 0.2952 45 1 2.0949 8.3689 0.4758 46 1 4.0042 8.2660 -1.0757 47 1 4.0904 6.5178 -2.8076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:38 Heat of formation + Delta-G solvation = -53.091123 kcal Electronic energy + Delta-G solvation = -29393.173774 eV Core-core repulsion = 25540.299799 eV Total energy + Delta-G solvation = -3852.873975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.07404 -40.39405 -39.65118 -37.70619 -37.11780 -34.66657 -34.56646 -31.77801 -31.74744 -31.01966 -29.51788 -27.56795 -27.27435 -26.95485 -23.70023 -23.40941 -22.85278 -22.57634 -20.89723 -19.66610 -18.54573 -18.45245 -17.89227 -17.66545 -17.09577 -16.90046 -16.54607 -16.14415 -16.05822 -15.77683 -15.27220 -14.83116 -14.71508 -14.63921 -14.39658 -14.26907 -14.01524 -13.63604 -13.62738 -13.53603 -13.32975 -13.14318 -13.00748 -12.83656 -12.76327 -12.63076 -12.52283 -12.29039 -12.17115 -12.06610 -11.86653 -11.81348 -11.25026 -10.96010 -10.78424 -10.51342 -9.81769 -9.80297 -9.64540 -9.41596 -8.13107 -6.31306 0.34585 0.51005 1.35171 1.43696 1.44574 1.52347 1.61970 2.08225 2.34807 2.48922 2.96251 3.13464 3.37726 3.39893 3.75919 3.83303 3.91520 4.05839 4.16147 4.18593 4.27964 4.31924 4.48901 4.53717 4.57843 4.61833 4.67974 4.71590 4.72716 4.76413 4.90121 4.98609 5.00242 5.09357 5.10322 5.15768 5.19250 5.35975 5.52228 5.55618 5.58000 5.62612 5.66556 5.71920 5.94582 6.03877 6.12341 6.18418 6.60648 6.80662 7.11911 7.20367 7.41676 8.89475 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.004516 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.642835 B = 6198.794907 C = 7732.405092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.272 3.728 3 H 0.035 0.965 4 C -0.547 4.547 5 H 0.059 0.941 6 C 0.024 3.976 7 N -0.911 5.911 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.591 5.591 13 C 0.095 3.905 14 C 0.522 3.478 15 O -0.586 6.586 16 C -0.150 4.150 17 H 0.120 0.880 18 C -0.110 4.110 19 C 0.107 3.893 20 N -0.608 5.608 21 C 0.167 3.833 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.140 4.140 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.101 4.101 28 C 0.522 3.478 29 O -0.549 6.549 30 H 0.067 0.933 31 H 0.015 0.985 32 H 0.031 0.969 33 H 0.264 0.736 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.141 0.859 46 H 0.153 0.847 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.931 13.047 -9.402 18.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.171 3.829 3 H 0.053 0.947 4 C -0.586 4.586 5 H 0.077 0.923 6 C -0.176 4.176 7 N -0.549 5.549 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.320 5.320 13 C -0.047 4.047 14 C 0.310 3.690 15 O -0.469 6.469 16 C -0.174 4.174 17 H 0.138 0.862 18 C -0.148 4.148 19 C -0.015 4.015 20 N -0.341 5.341 21 C 0.046 3.954 22 C -0.120 4.120 23 C -0.141 4.141 24 C -0.158 4.158 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.119 4.119 28 C 0.308 3.692 29 O -0.426 6.426 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.149 0.851 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.138 0.862 45 H 0.159 0.841 46 H 0.170 0.830 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.320 12.898 -9.706 18.160 hybrid contribution -0.684 -0.702 1.410 1.717 sum 7.636 12.196 -8.296 16.610 Atomic orbital electron populations 1.21805 0.98125 0.98860 0.99832 1.18705 0.91389 0.92253 0.80584 0.94724 1.21586 1.32371 1.13442 0.91159 0.92287 1.25643 0.94834 0.95489 1.01665 1.70039 1.36742 1.23626 1.24466 0.85587 0.78829 0.78714 0.78381 1.19504 1.20978 1.19606 1.48263 1.45171 1.14350 1.24190 1.21479 0.99563 0.82334 1.01366 1.20137 0.78535 0.87388 0.82975 1.90547 1.61638 1.68918 1.25757 1.22133 0.98775 0.92121 1.04405 0.86248 1.22686 0.95299 0.96091 1.00708 1.22409 0.78722 0.95150 1.05186 1.48322 1.09734 1.19198 1.56880 1.20410 0.98620 0.81781 0.94544 1.20328 0.95474 0.97686 0.98559 1.21200 0.98749 0.97948 0.96190 1.21344 1.00160 0.95922 0.98357 1.21490 0.94009 0.98807 0.99719 1.21531 0.98612 0.99117 0.95042 1.21359 0.97787 0.93834 0.98941 1.20486 0.87759 0.83694 0.77224 1.90737 1.16414 1.79262 1.56195 0.91396 0.96562 0.94979 0.92629 0.93545 0.91455 0.90393 0.86577 0.88967 0.86167 0.88996 0.85136 0.91354 0.88712 0.86154 0.84082 0.82964 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 8.90 71.98 0.64 -6.03 16 2 C 0.27 14.00 1.82 44.25 0.08 14.08 16 3 H 0.04 1.94 4.73 -2.39 -0.01 1.93 16 4 C -0.55 -29.19 8.01 25.60 0.21 -28.98 16 5 H 0.06 3.10 7.64 -2.91 -0.02 3.08 16 6 C 0.02 1.30 5.30 84.66 0.45 1.75 16 7 N -0.91 -51.32 11.32 21.45 0.24 -51.08 16 8 Si 0.96 42.14 29.54 68.60 2.03 44.16 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 N -0.59 -27.53 2.75 -826.79 -2.28 -29.80 16 13 C 0.10 3.91 9.22 127.77 1.18 5.09 16 14 C 0.52 22.96 6.78 87.65 0.59 23.56 16 15 O -0.59 -26.56 15.28 -3.04 -0.05 -26.61 16 16 C -0.15 -5.58 2.33 -11.55 -0.03 -5.61 16 17 H 0.12 4.81 6.92 -2.39 -0.02 4.79 16 18 C -0.11 -2.75 6.61 31.65 0.21 -2.54 16 19 C 0.11 2.00 7.35 86.84 0.64 2.64 16 20 N -0.61 -16.70 2.92 -822.32 -2.40 -19.10 16 21 C 0.17 3.86 6.06 85.64 0.52 4.38 16 22 C -0.12 -2.92 5.46 -19.86 -0.11 -3.03 16 23 C -0.12 -3.70 9.70 22.27 0.22 -3.48 16 24 C -0.14 -3.76 10.05 22.27 0.22 -3.54 16 25 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 26 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 27 C -0.10 -1.84 9.70 22.27 0.22 -1.62 16 28 C 0.52 20.19 7.07 87.90 0.62 20.81 16 29 O -0.55 -26.09 15.49 -3.03 -0.05 -26.13 16 30 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 31 H 0.02 0.82 7.49 -2.39 -0.02 0.80 16 32 H 0.03 1.56 7.53 -2.39 -0.02 1.54 16 33 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.58 7.66 -2.38 -0.02 2.57 16 36 H 0.08 3.16 7.26 -2.39 -0.02 3.14 16 37 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.09 2.49 6.89 -2.38 -0.02 2.48 16 39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.13 1.82 8.09 -2.39 -0.02 1.80 16 42 H 0.07 1.87 7.87 -2.39 -0.02 1.85 16 43 H 0.09 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.12 3.08 8.06 -2.91 -0.02 3.05 16 45 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -73.22 382.39 4.57 -68.65 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.96 Total: 26.79 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 6.10 Total: 13.12 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -4.43 Total: -99.98 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -0.09 Total: -52.74 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -73.22 4.57 -68.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.556 kcal (2) G-P(sol) polarization free energy of solvation -73.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds