Wall clock time and date at job start Tue Mar 31 2020 15:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47563 * 2 1 4 4 C 1.50697 * 109.47044 * 120.00288 * 2 1 3 5 5 H 1.08007 * 120.00336 * 119.99897 * 4 2 1 6 6 C 1.37875 * 120.00089 * 299.99611 * 4 2 1 7 7 N 1.31518 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00307 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47079 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47045 * 119.99672 * 8 6 4 11 11 H 1.48499 * 109.47368 * 239.99829 * 8 6 4 12 12 N 1.46502 * 109.46607 * 239.99849 * 2 1 3 13 13 C 1.46497 * 120.00199 * 299.99917 * 12 2 1 14 14 C 1.34784 * 119.99765 * 120.00465 * 12 2 1 15 15 O 1.21274 * 119.99705 * 5.37056 * 14 12 2 16 16 C 1.50698 * 119.99685 * 185.37156 * 14 12 2 17 17 H 1.09002 * 110.54439 * 323.07302 * 16 14 12 18 18 C 1.54788 * 110.61152 * 200.44362 * 16 14 12 19 19 C 1.54480 * 101.69024 * 266.40006 * 18 16 14 20 20 N 1.46757 * 105.47568 * 334.39351 * 19 18 16 21 21 C 1.46501 * 124.35132 * 197.03862 * 20 19 18 22 22 C 1.50697 * 109.47086 * 270.00142 * 21 20 19 23 23 C 1.38233 * 119.99907 * 269.72591 * 22 21 20 24 24 C 1.38239 * 119.99908 * 179.77008 * 23 22 21 25 25 C 1.38235 * 120.00133 * 0.49805 * 24 23 22 26 26 C 1.38238 * 119.99561 * 359.75468 * 25 24 23 27 27 C 1.38227 * 120.00311 * 359.97438 * 26 25 24 28 28 C 1.34415 * 111.30435 * 17.01447 * 20 19 18 29 29 O 1.21283 * 124.94508 * 179.55234 * 28 20 19 30 30 H 1.08997 * 109.46999 * 59.99660 * 1 2 3 31 31 H 1.09001 * 109.47563 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46546 * 300.00056 * 1 2 3 33 33 H 0.96996 * 120.00700 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47430 * 274.73022 * 13 12 2 35 35 H 1.09000 * 109.46960 * 34.73311 * 13 12 2 36 36 H 1.09007 * 109.47227 * 154.73197 * 13 12 2 37 37 H 1.08999 * 111.16471 * 148.23697 * 18 16 14 38 38 H 1.08990 * 110.87300 * 24.43875 * 18 16 14 39 39 H 1.09005 * 110.24462 * 215.38957 * 19 18 16 40 40 H 1.08997 * 110.31645 * 93.43739 * 19 18 16 41 41 H 1.09008 * 109.47201 * 29.99694 * 21 20 19 42 42 H 1.08999 * 109.47440 * 149.99632 * 21 20 19 43 43 H 1.07993 * 120.00445 * 359.97438 * 23 22 21 44 44 H 1.08004 * 120.00093 * 180.23160 * 24 23 22 45 45 H 1.08001 * 120.00478 * 179.73099 * 25 24 23 46 46 H 1.07999 * 119.99756 * 179.97438 * 26 25 24 47 47 H 1.08004 * 120.00051 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1483 -2.2858 3.6037 10 1 3.1474 -0.1858 4.8160 11 1 1.1678 -1.5866 4.8165 12 7 2.0182 -0.6907 -1.1962 13 6 1.6642 -2.0932 -1.4280 14 6 2.7931 -0.0357 -2.0834 15 8 3.1667 1.0932 -1.8449 16 6 3.1953 -0.7061 -3.3717 17 1 3.3829 -1.7674 -3.2083 18 6 4.4466 -0.0227 -3.9742 19 6 3.8097 1.0018 -4.9391 20 7 2.4975 0.4462 -5.2899 21 6 1.6952 0.8811 -6.4359 22 6 0.7883 2.0087 -6.0152 23 6 -0.4782 1.7342 -5.5341 24 6 -1.3084 2.7683 -5.1437 25 6 -0.8759 4.0774 -5.2441 26 6 0.3887 4.3521 -5.7301 27 6 1.2209 3.3178 -6.1152 28 6 2.1265 -0.5135 -4.4250 29 8 1.0842 -1.1314 -4.4780 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 0.7088 1.1613 3.4844 34 1 2.3683 -2.7375 -0.9013 35 1 0.6556 -2.2791 -1.0591 36 1 1.7055 -2.3066 -2.4962 37 1 5.0632 -0.7390 -4.5172 38 1 5.0260 0.4790 -3.1993 39 1 4.4243 1.1110 -5.8327 40 1 3.6912 1.9654 -4.4435 41 1 2.3556 1.2240 -7.2326 42 1 1.0940 0.0464 -6.7964 43 1 -0.8180 0.7118 -5.4602 44 1 -2.2966 2.5537 -4.7643 45 1 -1.5261 4.8856 -4.9432 46 1 0.7265 5.3749 -5.8089 47 1 2.2088 3.5325 -6.4953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931941615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:51 Heat of formation + Delta-G solvation = -33.742634 kcal Electronic energy + Delta-G solvation = -29287.428308 eV Core-core repulsion = 25435.393346 eV Total energy + Delta-G solvation = -3852.034962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90310 -39.21688 -38.34185 -36.39805 -35.25172 -33.67446 -32.77775 -30.89738 -30.74573 -29.42491 -27.60026 -26.26531 -26.02606 -25.17586 -22.96588 -22.45155 -21.79451 -20.74207 -19.60605 -18.34636 -17.26934 -16.90044 -16.54312 -16.31324 -15.71065 -15.61353 -15.16221 -14.95845 -14.68867 -14.31495 -14.08461 -13.63495 -13.42766 -13.39221 -13.16024 -12.78076 -12.72176 -12.53261 -12.45409 -12.29879 -12.10757 -11.67941 -11.56376 -11.41521 -11.15546 -11.06345 -11.00762 -10.98868 -10.76989 -10.64855 -10.22046 -10.13674 -9.79071 -9.14345 -9.03222 -8.90702 -8.87203 -8.65509 -8.40701 -7.55087 -6.04519 -4.12271 1.24631 1.41661 2.50684 2.96713 3.27722 3.31706 3.35947 3.39754 3.85516 3.96887 4.39341 4.44064 4.48775 4.69588 4.77295 4.87362 4.98605 5.04787 5.11393 5.14802 5.23451 5.27582 5.38202 5.50811 5.51772 5.59171 5.62440 5.88661 5.90764 5.95435 6.03263 6.08075 6.20344 6.42038 6.43076 6.46409 6.51781 6.56401 6.81939 6.88916 6.98974 7.06085 7.10213 7.45043 7.53517 7.74149 8.03598 8.17666 8.22251 8.53715 8.83532 9.01661 9.53885 11.00902 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.003764 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.093336 B = 7437.356224 C = 8373.758510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.062 0.938 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.582 5.582 13 C 0.081 3.919 14 C 0.522 3.478 15 O -0.544 6.544 16 C -0.152 4.152 17 H 0.122 0.878 18 C -0.114 4.114 19 C 0.105 3.895 20 N -0.611 5.611 21 C 0.169 3.831 22 C -0.113 4.113 23 C -0.094 4.094 24 C -0.120 4.120 25 C -0.115 4.115 26 C -0.125 4.125 27 C -0.104 4.104 28 C 0.537 3.463 29 O -0.519 6.519 30 H 0.010 0.990 31 H 0.031 0.969 32 H 0.094 0.906 33 H 0.262 0.738 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 1.186 -19.956 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.311 5.311 13 C -0.062 4.062 14 C 0.306 3.694 15 O -0.422 6.422 16 C -0.177 4.177 17 H 0.140 0.860 18 C -0.152 4.152 19 C -0.017 4.017 20 N -0.345 5.345 21 C 0.048 3.952 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.139 4.139 25 C -0.133 4.133 26 C -0.143 4.143 27 C -0.122 4.122 28 C 0.324 3.676 29 O -0.394 6.394 30 H 0.029 0.971 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.970 1.566 -19.748 19.908 hybrid contribution 0.226 -0.491 1.050 1.181 sum 2.197 1.075 -18.698 18.857 Atomic orbital electron populations 1.22077 0.98134 0.99476 1.00729 1.18962 0.90884 0.94348 0.79897 0.92012 1.21344 1.31656 1.12900 0.90217 0.92183 1.24895 0.94973 0.94988 0.98962 1.69894 1.36485 1.22709 1.23597 0.86435 0.78589 0.79574 0.82757 1.19802 1.20943 1.20952 1.48169 1.47954 1.11861 1.23166 1.21681 1.01604 0.82690 1.00254 1.19492 0.79728 0.86319 0.83848 1.90646 1.55263 1.18826 1.77503 1.22246 0.96641 1.03853 0.94985 0.85991 1.22543 0.95680 0.97885 0.99087 1.22127 0.82648 0.98289 0.98671 1.48233 1.20433 1.37524 1.28321 1.20234 0.92666 0.95483 0.86826 1.20202 0.95209 0.94717 1.01298 1.21167 0.93552 0.99615 0.96944 1.21189 1.00099 0.92859 0.99706 1.21188 0.96356 0.96738 0.99029 1.21106 0.94399 0.99028 0.99722 1.20985 0.99238 0.92140 0.99870 1.20270 0.86577 0.79040 0.81723 1.90705 1.25036 1.49812 1.73851 0.97087 0.95017 0.88796 0.92779 0.93203 0.91075 0.91781 0.89684 0.87872 0.90452 0.90244 0.89460 0.89160 0.85738 0.86008 0.86140 0.86120 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 8.94 37.16 0.33 -3.36 16 2 C 0.26 6.85 2.63 -69.08 -0.18 6.67 16 3 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 4 C -0.52 -14.42 8.37 -34.44 -0.29 -14.71 16 5 H 0.06 1.63 7.51 -52.48 -0.39 1.24 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.58 -13.08 2.75 -175.26 -0.48 -13.56 16 13 C 0.08 1.53 9.41 59.85 0.56 2.09 16 14 C 0.52 10.99 6.85 -10.98 -0.08 10.92 16 15 O -0.54 -13.12 15.14 5.56 0.08 -13.03 16 16 C -0.15 -2.38 2.35 -91.70 -0.22 -2.59 16 17 H 0.12 1.68 6.76 -51.93 -0.35 1.32 16 18 C -0.11 -1.35 6.40 -25.01 -0.16 -1.51 16 19 C 0.11 1.18 7.26 -3.13 -0.02 1.16 16 20 N -0.61 -8.00 2.92 -173.79 -0.51 -8.51 16 21 C 0.17 1.86 6.06 -5.19 -0.03 1.83 16 22 C -0.11 -1.43 5.46 -104.63 -0.57 -2.00 16 23 C -0.09 -1.32 9.70 -39.58 -0.38 -1.70 16 24 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 25 C -0.11 -1.39 10.05 -39.58 -0.40 -1.78 16 26 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 27 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 28 C 0.54 8.65 7.25 -10.86 -0.08 8.57 16 29 O -0.52 -9.61 16.45 5.55 0.09 -9.52 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.03 0.75 6.69 -51.93 -0.35 0.40 16 32 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.05 0.88 7.99 -51.93 -0.42 0.46 16 35 H 0.07 1.37 6.45 -51.93 -0.33 1.03 16 36 H 0.06 1.07 4.94 -51.93 -0.26 0.82 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.35 7.37 -51.93 -0.38 0.97 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 0.68 8.09 -51.92 -0.42 0.26 16 42 H 0.09 1.00 7.87 -51.93 -0.41 0.59 16 43 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 47 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -33.95 383.08 -9.14 -43.09 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.92 Total: 4.53 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.79 Total: -0.13 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.36 Total: -47.00 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.18 Total: -22.55 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.95 -9.14 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.347 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds