Wall clock time and date at job start Tue Mar 31 2020 15:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47563 * 2 1 4 4 C 1.50697 * 109.47044 * 120.00288 * 2 1 3 5 5 H 1.08007 * 120.00336 * 119.99897 * 4 2 1 6 6 C 1.37875 * 120.00089 * 299.99611 * 4 2 1 7 7 N 1.31518 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00307 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47079 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47045 * 119.99672 * 8 6 4 11 11 H 1.48499 * 109.47368 * 239.99829 * 8 6 4 12 12 N 1.46502 * 109.46607 * 239.99849 * 2 1 3 13 13 C 1.46497 * 120.00199 * 299.99917 * 12 2 1 14 14 C 1.34784 * 119.99765 * 120.00465 * 12 2 1 15 15 O 1.21274 * 119.99705 * 5.37056 * 14 12 2 16 16 C 1.50698 * 119.99685 * 185.37156 * 14 12 2 17 17 H 1.09002 * 110.54439 * 323.07302 * 16 14 12 18 18 C 1.54788 * 110.61152 * 200.44362 * 16 14 12 19 19 C 1.54480 * 101.69024 * 266.40006 * 18 16 14 20 20 N 1.46757 * 105.47568 * 334.39351 * 19 18 16 21 21 C 1.46501 * 124.35132 * 197.03862 * 20 19 18 22 22 C 1.50697 * 109.47086 * 270.00142 * 21 20 19 23 23 C 1.38233 * 119.99907 * 269.72591 * 22 21 20 24 24 C 1.38239 * 119.99908 * 179.77008 * 23 22 21 25 25 C 1.38235 * 120.00133 * 0.49805 * 24 23 22 26 26 C 1.38238 * 119.99561 * 359.75468 * 25 24 23 27 27 C 1.38227 * 120.00311 * 359.97438 * 26 25 24 28 28 C 1.34415 * 111.30435 * 17.01447 * 20 19 18 29 29 O 1.21283 * 124.94508 * 179.55234 * 28 20 19 30 30 H 1.08997 * 109.46999 * 59.99660 * 1 2 3 31 31 H 1.09001 * 109.47563 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46546 * 300.00056 * 1 2 3 33 33 H 0.96996 * 120.00700 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47430 * 274.73022 * 13 12 2 35 35 H 1.09000 * 109.46960 * 34.73311 * 13 12 2 36 36 H 1.09007 * 109.47227 * 154.73197 * 13 12 2 37 37 H 1.08999 * 111.16471 * 148.23697 * 18 16 14 38 38 H 1.08990 * 110.87300 * 24.43875 * 18 16 14 39 39 H 1.09005 * 110.24462 * 215.38957 * 19 18 16 40 40 H 1.08997 * 110.31645 * 93.43739 * 19 18 16 41 41 H 1.09008 * 109.47201 * 29.99694 * 21 20 19 42 42 H 1.08999 * 109.47440 * 149.99632 * 21 20 19 43 43 H 1.07993 * 120.00445 * 359.97438 * 23 22 21 44 44 H 1.08004 * 120.00093 * 180.23160 * 24 23 22 45 45 H 1.08001 * 120.00478 * 179.73099 * 25 24 23 46 46 H 1.07999 * 119.99756 * 179.97438 * 26 25 24 47 47 H 1.08004 * 120.00051 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1483 -2.2858 3.6037 10 1 3.1474 -0.1858 4.8160 11 1 1.1678 -1.5866 4.8165 12 7 2.0182 -0.6907 -1.1962 13 6 1.6642 -2.0932 -1.4280 14 6 2.7931 -0.0357 -2.0834 15 8 3.1667 1.0932 -1.8449 16 6 3.1953 -0.7061 -3.3717 17 1 3.3829 -1.7674 -3.2083 18 6 4.4466 -0.0227 -3.9742 19 6 3.8097 1.0018 -4.9391 20 7 2.4975 0.4462 -5.2899 21 6 1.6952 0.8811 -6.4359 22 6 0.7883 2.0087 -6.0152 23 6 -0.4782 1.7342 -5.5341 24 6 -1.3084 2.7683 -5.1437 25 6 -0.8759 4.0774 -5.2441 26 6 0.3887 4.3521 -5.7301 27 6 1.2209 3.3178 -6.1152 28 6 2.1265 -0.5135 -4.4250 29 8 1.0842 -1.1314 -4.4780 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 0.7088 1.1613 3.4844 34 1 2.3683 -2.7375 -0.9013 35 1 0.6556 -2.2791 -1.0591 36 1 1.7055 -2.3066 -2.4962 37 1 5.0632 -0.7390 -4.5172 38 1 5.0260 0.4790 -3.1993 39 1 4.4243 1.1110 -5.8327 40 1 3.6912 1.9654 -4.4435 41 1 2.3556 1.2240 -7.2326 42 1 1.0940 0.0464 -6.7964 43 1 -0.8180 0.7118 -5.4602 44 1 -2.2966 2.5537 -4.7643 45 1 -1.5261 4.8856 -4.9432 46 1 0.7265 5.3749 -5.8089 47 1 2.2088 3.5325 -6.4953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:50 Heat of formation + Delta-G solvation = -53.826880 kcal Electronic energy + Delta-G solvation = -29288.299226 eV Core-core repulsion = 25435.393346 eV Total energy + Delta-G solvation = -3852.905880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.14218 -40.39595 -39.70939 -37.70460 -36.98153 -34.98015 -34.52098 -32.04242 -31.83570 -31.10912 -28.79550 -27.67682 -27.32249 -27.21772 -24.28581 -23.51170 -22.79676 -22.22928 -20.90342 -19.81821 -18.73467 -18.39635 -17.97966 -17.63970 -17.22697 -16.79203 -16.55939 -16.22311 -16.02127 -15.65270 -15.53545 -14.82423 -14.71217 -14.51382 -14.44218 -14.33046 -14.04937 -13.93591 -13.77196 -13.52665 -13.39685 -13.19476 -12.99331 -12.92623 -12.76500 -12.67435 -12.41661 -12.24217 -12.23242 -12.11523 -12.03535 -11.90187 -11.21633 -11.06383 -10.73955 -10.53172 -9.87509 -9.85707 -9.68668 -9.37908 -8.16400 -6.33390 0.28715 0.45140 1.18708 1.40719 1.41464 1.53617 1.70044 2.05869 2.31549 2.47642 2.90429 3.11439 3.30895 3.41312 3.62978 3.80396 3.86676 3.99446 4.09854 4.19398 4.22538 4.27583 4.38465 4.48822 4.53445 4.63239 4.65039 4.69225 4.70998 4.72496 4.79289 4.95908 4.98555 5.01326 5.04439 5.09317 5.15101 5.39482 5.48194 5.49929 5.53695 5.56219 5.59039 5.62843 5.95072 5.99255 6.06543 6.11720 6.73078 6.73757 7.01250 7.23113 7.40996 8.88694 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.003764 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.093336 B = 7437.356224 C = 8373.758510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.265 3.735 3 H 0.011 0.989 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.595 5.595 13 C 0.084 3.916 14 C 0.512 3.488 15 O -0.583 6.583 16 C -0.149 4.149 17 H 0.143 0.857 18 C -0.107 4.107 19 C 0.103 3.897 20 N -0.603 5.603 21 C 0.167 3.833 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.142 4.142 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.106 4.106 28 C 0.528 3.472 29 O -0.552 6.552 30 H 0.008 0.992 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.265 0.735 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.088 0.912 39 H 0.129 0.871 40 H 0.057 0.943 41 H 0.131 0.869 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.125 0.875 45 H 0.139 0.861 46 H 0.147 0.853 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 0.438 -21.556 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.163 3.837 3 H 0.029 0.971 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.201 1.201 12 N -0.324 5.324 13 C -0.058 4.058 14 C 0.299 3.701 15 O -0.465 6.465 16 C -0.173 4.173 17 H 0.161 0.839 18 C -0.144 4.144 19 C -0.019 4.019 20 N -0.335 5.335 21 C 0.046 3.954 22 C -0.125 4.125 23 C -0.140 4.140 24 C -0.160 4.160 25 C -0.144 4.144 26 C -0.149 4.149 27 C -0.124 4.124 28 C 0.314 3.686 29 O -0.430 6.430 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.148 0.852 38 H 0.106 0.894 39 H 0.147 0.853 40 H 0.075 0.925 41 H 0.149 0.851 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.143 0.857 45 H 0.157 0.843 46 H 0.165 0.835 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.126 0.814 -21.392 21.801 hybrid contribution -0.460 -0.157 1.514 1.590 sum 3.666 0.657 -19.877 20.223 Atomic orbital electron populations 1.21867 0.97730 0.99799 0.99455 1.18529 0.91122 0.92231 0.81795 0.97108 1.21567 1.31931 1.13051 0.90939 0.91946 1.25774 0.94989 0.95620 1.02122 1.70032 1.37347 1.24012 1.24437 0.85352 0.78200 0.78513 0.78616 1.18747 1.20865 1.20107 1.48187 1.48485 1.13262 1.22500 1.21802 1.01419 0.80743 1.01877 1.20424 0.78509 0.85973 0.85150 1.90614 1.56521 1.20695 1.78638 1.22256 0.98392 1.04858 0.91799 0.83950 1.22659 0.94233 0.98579 0.98962 1.22324 0.82235 0.96792 1.00537 1.48355 1.21074 1.36113 1.27948 1.20481 0.93112 0.94863 0.86900 1.20456 0.94878 0.96040 1.01166 1.21249 0.94998 0.99068 0.98659 1.21400 1.00569 0.93594 1.00420 1.21501 0.97295 0.96676 0.98967 1.21526 0.94049 1.00530 0.98798 1.21373 1.00472 0.91478 0.99094 1.20407 0.86163 0.79729 0.82265 1.90685 1.26201 1.51367 1.74779 0.97307 0.93736 0.90993 0.92594 0.91828 0.91874 0.89552 0.85165 0.89369 0.85332 0.92476 0.85098 0.89612 0.87408 0.85671 0.84331 0.83547 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 8.94 71.98 0.64 -6.20 16 2 C 0.27 14.58 2.63 44.24 0.12 14.70 16 3 H 0.01 0.71 6.91 -2.39 -0.02 0.69 16 4 C -0.54 -30.11 8.37 25.60 0.21 -29.90 16 5 H 0.06 3.39 7.51 -2.91 -0.02 3.37 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -54.25 11.32 21.45 0.24 -54.01 16 8 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.59 -27.27 2.75 -826.80 -2.28 -29.55 16 13 C 0.08 3.12 9.41 127.77 1.20 4.32 16 14 C 0.51 21.90 6.85 87.66 0.60 22.50 16 15 O -0.58 -29.18 15.14 -3.01 -0.05 -29.23 16 16 C -0.15 -4.42 2.35 -11.49 -0.03 -4.45 16 17 H 0.14 3.57 6.76 -2.39 -0.02 3.55 16 18 C -0.11 -2.22 6.40 31.71 0.20 -2.02 16 19 C 0.10 1.98 7.26 86.83 0.63 2.61 16 20 N -0.60 -14.44 2.92 -822.33 -2.40 -16.84 16 21 C 0.17 3.29 6.06 85.63 0.52 3.81 16 22 C -0.12 -3.04 5.46 -19.87 -0.11 -3.15 16 23 C -0.12 -3.52 9.70 22.27 0.22 -3.31 16 24 C -0.14 -3.90 10.05 22.27 0.22 -3.67 16 25 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 26 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 27 C -0.11 -2.23 9.70 22.27 0.22 -2.01 16 28 C 0.53 16.42 7.25 87.90 0.64 17.06 16 29 O -0.55 -20.43 16.45 -3.04 -0.05 -20.48 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.04 2.17 6.69 -2.39 -0.02 2.15 16 32 H 0.07 4.10 6.07 -2.39 -0.01 4.09 16 33 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.06 2.17 7.99 -2.39 -0.02 2.15 16 35 H 0.06 2.42 6.45 -2.39 -0.02 2.41 16 36 H 0.09 2.81 4.94 -2.38 -0.01 2.80 16 37 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 2.17 7.37 -2.39 -0.02 2.15 16 39 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.13 1.44 8.09 -2.38 -0.02 1.42 16 42 H 0.09 1.79 7.87 -2.39 -0.02 1.77 16 43 H 0.11 3.37 8.06 -2.91 -0.02 3.35 16 44 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 45 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 46 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 47 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -78.26 383.08 4.65 -73.61 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.97 Total: 24.54 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.18 Total: 6.13 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -4.43 Total: -100.39 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.10 Total: -49.70 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -78.26 4.65 -73.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.783 kcal (2) G-P(sol) polarization free energy of solvation -78.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds