Wall clock time and date at job start Tue Mar 31 2020 16:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50695 * 120.00561 * 2 1 4 4 O 1.42900 * 109.47361 * 134.99769 * 3 2 1 5 5 C 1.35710 * 116.99747 * 180.02562 * 4 3 2 6 6 C 1.39006 * 119.90753 * 179.97438 * 5 4 3 7 7 C 1.37696 * 120.08344 * 179.97438 * 6 5 4 8 8 C 1.39727 * 119.91504 * 359.97438 * 7 6 5 9 9 C 1.47611 * 120.08864 * 180.02562 * 8 7 6 10 10 O 1.21587 * 119.99893 * 49.53578 * 9 8 7 11 11 N 1.34768 * 120.00314 * 229.53176 * 9 8 7 12 12 C 1.46507 * 120.00022 * 355.15210 * 11 9 8 13 13 C 1.52992 * 109.47014 * 261.43894 * 12 11 9 14 14 C 1.46497 * 120.00410 * 175.14636 * 11 9 8 15 15 C 1.53499 * 114.20671 * 300.00563 * 14 11 9 16 16 N 1.47065 * 87.98434 * 87.71566 * 15 14 11 17 17 C 1.36944 * 136.05702 * 207.08860 * 16 15 14 18 18 H 1.07998 * 119.99445 * 8.86177 * 17 16 15 19 19 C 1.38804 * 119.99901 * 188.86830 * 17 16 15 20 20 N 1.31627 * 119.99864 * 193.08768 * 19 17 16 21 21 Si 1.86800 * 120.00268 * 13.08525 * 19 17 16 22 22 H 1.48501 * 109.47282 * 270.00224 * 21 19 17 23 23 H 1.48497 * 109.47159 * 30.00532 * 21 19 17 24 24 H 1.48509 * 109.47036 * 150.00124 * 21 19 17 25 25 C 1.47067 * 87.88891 * 27.34061 * 16 15 14 26 26 C 1.39732 * 119.82504 * 0.27827 * 8 7 6 27 27 C 1.37705 * 119.91171 * 359.46549 * 26 8 7 28 28 H 1.08008 * 120.00047 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00581 * 179.97438 * 1 2 3 30 30 H 1.08009 * 119.99686 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46842 * 15.00061 * 3 2 1 32 32 H 1.08999 * 109.47563 * 255.00262 * 3 2 1 33 33 H 1.08001 * 119.95410 * 359.97438 * 6 5 4 34 34 H 1.08005 * 120.03991 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46837 * 21.44269 * 12 11 9 36 36 H 1.09000 * 109.47271 * 141.43676 * 12 11 9 37 37 H 1.08997 * 109.47214 * 46.91667 * 13 12 11 38 38 H 1.09008 * 109.47195 * 166.91012 * 13 12 11 39 39 H 1.08998 * 109.47733 * 286.91282 * 13 12 11 40 40 H 1.08998 * 113.28891 * 166.93429 * 14 11 9 41 41 H 1.08992 * 113.46638 * 332.93437 * 15 14 11 42 42 H 1.09001 * 113.51977 * 202.50179 * 15 14 11 43 43 H 0.97001 * 119.99849 * 354.92128 * 20 19 17 44 44 H 1.08997 * 113.46768 * 87.43553 * 25 16 15 45 45 H 1.08992 * 113.46771 * 217.88012 * 25 16 15 46 46 H 1.08002 * 120.04302 * 179.69982 * 26 8 7 47 47 H 1.07997 * 119.95937 * 180.25304 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9080 2.3436 1.0787 6 6 4.9594 2.3477 1.9880 7 6 5.7548 3.4641 2.1185 8 6 5.5042 4.5937 1.3351 9 6 6.3548 5.7924 1.4714 10 8 7.5655 5.6853 1.4408 11 7 5.7893 7.0054 1.6296 12 6 4.3330 7.1495 1.5601 13 6 3.9347 7.6357 0.1653 14 6 6.6308 8.1800 1.8713 15 6 7.4877 8.0897 3.1416 16 7 8.5207 7.4226 2.3349 17 6 9.5302 6.5277 2.5702 18 1 9.6092 6.0434 3.5322 19 6 10.4520 6.2432 1.5721 20 7 11.2580 5.2099 1.6958 21 14 10.5488 7.3268 0.0536 22 1 9.6308 6.8013 -0.9888 23 1 10.1528 8.7132 0.4087 24 1 11.9398 7.3271 -0.4665 25 6 7.9965 8.1442 1.1656 26 6 4.4431 4.5874 0.4259 27 6 3.6555 3.4651 0.2975 28 1 -0.5401 0.9354 0.0004 29 1 -0.5401 -0.9352 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3856 2.1160 0.2660 32 1 2.4756 1.4867 -0.9926 33 1 5.1527 1.4741 2.5929 34 1 6.5712 3.4667 2.8255 35 1 3.8628 6.1861 1.7572 36 1 4.0036 7.8737 2.3052 37 1 4.4561 7.0451 -0.5880 38 1 2.8584 7.5224 0.0346 39 1 4.2055 8.6857 0.0553 40 1 6.0966 9.1234 1.7586 41 1 7.0570 7.4492 3.9111 42 1 7.7980 9.0610 3.5269 43 1 11.2592 4.6911 2.5154 44 1 8.4404 9.1303 1.0292 45 1 7.9991 7.5501 0.2519 46 1 4.2432 5.4602 -0.1779 47 1 2.8377 3.4580 -0.4078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950644908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:45 Heat of formation + Delta-G solvation = 92.604814 kcal Electronic energy + Delta-G solvation = -29029.761464 eV Core-core repulsion = 25183.205338 eV Total energy + Delta-G solvation = -3846.556125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.57962 -39.82185 -37.86663 -36.23062 -35.29919 -34.36425 -32.05970 -31.08605 -30.11946 -29.88010 -27.51740 -26.89655 -25.13070 -23.81311 -22.95978 -22.83640 -22.04489 -20.35823 -20.01440 -18.43885 -18.15975 -17.18515 -16.92985 -16.61616 -16.14353 -15.51614 -15.07124 -14.81195 -14.66733 -14.50514 -14.28107 -13.81593 -13.50558 -13.41480 -13.20842 -13.04944 -13.02626 -12.97374 -12.63387 -12.39125 -12.15737 -11.58478 -11.55805 -11.49828 -11.45427 -11.03925 -10.97469 -10.74037 -10.68928 -10.34544 -9.98864 -9.92246 -9.42417 -9.00142 -8.93659 -8.78148 -8.35006 -8.05868 -7.87116 -6.65940 -5.93053 -2.78753 1.23080 1.37273 1.64655 3.12423 3.37340 3.40008 3.61880 3.69306 3.82014 3.96483 4.41234 4.60526 4.70888 4.80402 4.86108 4.91801 4.91859 4.99076 5.02297 5.07592 5.12407 5.30940 5.35817 5.40930 5.47806 5.50005 5.64735 5.68131 5.73296 5.78058 5.90098 6.01347 6.08146 6.11318 6.14596 6.16827 6.22769 6.30470 6.35235 6.44666 6.58522 6.60509 6.69007 6.75378 7.27930 7.33620 7.46385 8.02265 8.55439 9.09709 9.32566 9.91072 10.73799 11.58477 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.003408 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.950376 B = 8212.864127 C = 9101.306058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C 0.086 3.914 4 O -0.311 6.311 5 C 0.135 3.865 6 C -0.154 4.154 7 C -0.031 4.031 8 C -0.143 4.143 9 C 0.513 3.487 10 O -0.408 6.408 11 N -0.599 5.599 12 C 0.104 3.896 13 C -0.175 4.175 14 C 0.104 3.896 15 C 0.101 3.899 16 N -0.596 5.596 17 C -0.252 4.252 18 H 0.070 0.930 19 C -0.019 4.019 20 N -0.948 5.948 21 Si 1.066 2.934 22 H -0.300 1.300 23 H -0.286 1.286 24 H -0.305 1.305 25 C 0.100 3.900 26 C -0.067 4.067 27 C -0.217 4.217 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.255 0.745 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.137 0.863 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.441 -1.972 -3.319 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.011 3.989 4 O -0.225 6.225 5 C 0.090 3.910 6 C -0.173 4.173 7 C -0.050 4.050 8 C -0.147 4.147 9 C 0.297 3.703 10 O -0.274 6.274 11 N -0.336 5.336 12 C -0.020 4.020 13 C -0.234 4.234 14 C -0.001 4.001 15 C -0.027 4.027 16 N -0.324 5.324 17 C -0.378 4.378 18 H 0.087 0.913 19 C -0.216 4.216 20 N -0.593 5.593 21 Si 0.900 3.100 22 H -0.228 1.228 23 H -0.213 1.213 24 H -0.233 1.233 25 C -0.026 4.026 26 C -0.085 4.085 27 C -0.236 4.236 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.155 0.845 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.758 -2.252 -4.642 24.312 hybrid contribution -1.038 -0.033 1.266 1.637 sum -24.796 -2.286 -3.375 25.129 Atomic orbital electron populations 1.23878 0.95405 1.02556 0.99216 1.22696 0.95669 0.97903 1.00962 1.21827 0.87947 0.96731 0.92417 1.86037 1.42077 1.35955 1.58444 1.19138 0.91144 0.85729 0.95016 1.20351 0.95876 0.99948 1.01089 1.21054 0.96772 0.90414 0.96745 1.20164 0.97711 0.96373 1.00408 1.18538 0.88912 0.82448 0.80355 1.91463 1.10958 1.84215 1.40734 1.47384 1.05321 1.06798 1.74048 1.21585 0.81271 1.02280 0.96843 1.22377 1.01005 1.02143 0.97847 1.22641 0.91479 0.86781 0.99236 1.22831 0.89911 0.95815 0.94149 1.45800 1.37216 1.46706 1.02657 1.19709 1.02226 1.14854 1.01049 0.91255 1.25406 0.94920 0.99703 1.01606 1.70880 1.43514 1.17336 1.27548 0.83733 0.74444 0.75606 0.76199 1.22796 1.21296 1.23319 1.22928 0.89786 0.95664 0.94263 1.21454 0.92505 0.97924 0.96624 1.21082 1.04187 0.94269 1.04026 0.88231 0.87457 0.86206 0.91418 0.90911 0.84897 0.84446 0.89931 0.91159 0.91999 0.91902 0.92113 0.89281 0.94239 0.94355 0.93514 0.93705 0.92706 0.84542 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 14.31 29.02 0.42 -0.59 16 2 C -0.15 -1.14 9.89 -36.03 -0.36 -1.50 16 3 C 0.09 0.73 5.15 36.00 0.19 0.91 16 4 O -0.31 -3.73 10.11 -18.84 -0.19 -3.92 16 5 C 0.14 1.77 6.70 -39.02 -0.26 1.51 16 6 C -0.15 -2.20 9.97 -39.49 -0.39 -2.59 16 7 C -0.03 -0.52 9.72 -39.22 -0.38 -0.90 16 8 C -0.14 -2.41 4.93 -104.96 -0.52 -2.93 16 9 C 0.51 10.30 6.82 -12.44 -0.08 10.22 16 10 O -0.41 -10.61 10.40 5.29 0.06 -10.55 16 11 N -0.60 -9.94 2.75 -166.93 -0.46 -10.40 16 12 C 0.10 1.20 5.62 -4.04 -0.02 1.18 16 13 C -0.18 -1.68 9.17 37.15 0.34 -1.34 16 14 C 0.10 1.82 4.88 -67.67 -0.33 1.49 16 15 C 0.10 2.07 8.26 -8.50 -0.07 2.00 16 16 N -0.60 -15.37 2.03 -184.60 -0.38 -15.74 16 17 C -0.25 -7.67 8.84 -15.06 -0.13 -7.80 16 18 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 19 C -0.02 -0.61 5.21 -17.43 -0.09 -0.70 16 20 N -0.95 -32.10 13.70 55.49 0.76 -31.34 16 21 Si 1.07 29.32 25.51 -169.99 -4.34 24.98 16 22 H -0.30 -8.19 7.01 56.52 0.40 -7.79 16 23 H -0.29 -7.18 5.49 56.52 0.31 -6.86 16 24 H -0.30 -8.46 7.11 56.52 0.40 -8.06 16 25 C 0.10 2.24 4.51 -8.36 -0.04 2.20 16 26 C -0.07 -0.90 7.48 -39.22 -0.29 -1.19 16 27 C -0.22 -2.58 9.01 -39.50 -0.36 -2.93 16 28 H 0.10 0.48 7.90 -52.48 -0.41 0.07 16 29 H 0.11 0.48 8.06 -52.49 -0.42 0.06 16 30 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 31 H 0.07 0.49 7.37 -51.93 -0.38 0.10 16 32 H 0.07 0.56 7.65 -51.93 -0.40 0.17 16 33 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.14 2.45 8.06 -52.48 -0.42 2.03 16 35 H 0.08 0.93 5.25 -51.93 -0.27 0.66 16 36 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 37 H 0.06 0.67 6.36 -51.93 -0.33 0.34 16 38 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.25 8.57 8.73 -40.82 -0.36 8.21 16 44 H 0.05 0.97 6.95 -51.93 -0.36 0.61 16 45 H 0.05 1.34 5.32 -51.93 -0.28 1.07 16 46 H 0.14 1.60 4.18 -52.49 -0.22 1.38 16 47 H 0.13 1.13 6.28 -52.49 -0.33 0.80 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -37.83 369.65 -8.24 -46.07 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.88 Total: -1.71 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.39 Total: -2.96 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.07 Total: -57.48 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.14 Total: -14.47 kcal Atomic # 14 Polarization: 29.32 SS G_CDS: -4.34 Total: 24.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.83 -8.24 -46.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950644908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.676 kcal (2) G-P(sol) polarization free energy of solvation -37.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds