Wall clock time and date at job start Tue Mar 31 2020 16:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50695 * 120.00561 * 2 1 4 4 O 1.42900 * 109.47361 * 134.99769 * 3 2 1 5 5 C 1.35710 * 116.99747 * 180.02562 * 4 3 2 6 6 C 1.39006 * 119.90753 * 179.97438 * 5 4 3 7 7 C 1.37696 * 120.08344 * 179.97438 * 6 5 4 8 8 C 1.39727 * 119.91504 * 359.97438 * 7 6 5 9 9 C 1.47611 * 120.08864 * 180.02562 * 8 7 6 10 10 O 1.21587 * 119.99893 * 49.53578 * 9 8 7 11 11 N 1.34768 * 120.00314 * 229.53176 * 9 8 7 12 12 C 1.46507 * 120.00022 * 355.15210 * 11 9 8 13 13 C 1.52992 * 109.47014 * 261.43894 * 12 11 9 14 14 C 1.46497 * 120.00410 * 175.14636 * 11 9 8 15 15 C 1.53499 * 114.20671 * 300.00563 * 14 11 9 16 16 N 1.47065 * 87.98434 * 87.71566 * 15 14 11 17 17 C 1.36944 * 136.05702 * 207.08860 * 16 15 14 18 18 H 1.07998 * 119.99445 * 8.86177 * 17 16 15 19 19 C 1.38804 * 119.99901 * 188.86830 * 17 16 15 20 20 N 1.31627 * 119.99864 * 193.08768 * 19 17 16 21 21 Si 1.86800 * 120.00268 * 13.08525 * 19 17 16 22 22 H 1.48501 * 109.47282 * 270.00224 * 21 19 17 23 23 H 1.48497 * 109.47159 * 30.00532 * 21 19 17 24 24 H 1.48509 * 109.47036 * 150.00124 * 21 19 17 25 25 C 1.47067 * 87.88891 * 27.34061 * 16 15 14 26 26 C 1.39732 * 119.82504 * 0.27827 * 8 7 6 27 27 C 1.37705 * 119.91171 * 359.46549 * 26 8 7 28 28 H 1.08008 * 120.00047 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00581 * 179.97438 * 1 2 3 30 30 H 1.08009 * 119.99686 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46842 * 15.00061 * 3 2 1 32 32 H 1.08999 * 109.47563 * 255.00262 * 3 2 1 33 33 H 1.08001 * 119.95410 * 359.97438 * 6 5 4 34 34 H 1.08005 * 120.03991 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46837 * 21.44269 * 12 11 9 36 36 H 1.09000 * 109.47271 * 141.43676 * 12 11 9 37 37 H 1.08997 * 109.47214 * 46.91667 * 13 12 11 38 38 H 1.09008 * 109.47195 * 166.91012 * 13 12 11 39 39 H 1.08998 * 109.47733 * 286.91282 * 13 12 11 40 40 H 1.08998 * 113.28891 * 166.93429 * 14 11 9 41 41 H 1.08992 * 113.46638 * 332.93437 * 15 14 11 42 42 H 1.09001 * 113.51977 * 202.50179 * 15 14 11 43 43 H 0.97001 * 119.99849 * 354.92128 * 20 19 17 44 44 H 1.08997 * 113.46768 * 87.43553 * 25 16 15 45 45 H 1.08992 * 113.46771 * 217.88012 * 25 16 15 46 46 H 1.08002 * 120.04302 * 179.69982 * 26 8 7 47 47 H 1.07997 * 119.95937 * 180.25304 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9080 2.3436 1.0787 6 6 4.9594 2.3477 1.9880 7 6 5.7548 3.4641 2.1185 8 6 5.5042 4.5937 1.3351 9 6 6.3548 5.7924 1.4714 10 8 7.5655 5.6853 1.4408 11 7 5.7893 7.0054 1.6296 12 6 4.3330 7.1495 1.5601 13 6 3.9347 7.6357 0.1653 14 6 6.6308 8.1800 1.8713 15 6 7.4877 8.0897 3.1416 16 7 8.5207 7.4226 2.3349 17 6 9.5302 6.5277 2.5702 18 1 9.6092 6.0434 3.5322 19 6 10.4520 6.2432 1.5721 20 7 11.2580 5.2099 1.6958 21 14 10.5488 7.3268 0.0536 22 1 9.6308 6.8013 -0.9888 23 1 10.1528 8.7132 0.4087 24 1 11.9398 7.3271 -0.4665 25 6 7.9965 8.1442 1.1656 26 6 4.4431 4.5874 0.4259 27 6 3.6555 3.4651 0.2975 28 1 -0.5401 0.9354 0.0004 29 1 -0.5401 -0.9352 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3856 2.1160 0.2660 32 1 2.4756 1.4867 -0.9926 33 1 5.1527 1.4741 2.5929 34 1 6.5712 3.4667 2.8255 35 1 3.8628 6.1861 1.7572 36 1 4.0036 7.8737 2.3052 37 1 4.4561 7.0451 -0.5880 38 1 2.8584 7.5224 0.0346 39 1 4.2055 8.6857 0.0553 40 1 6.0966 9.1234 1.7586 41 1 7.0570 7.4492 3.9111 42 1 7.7980 9.0610 3.5269 43 1 11.2592 4.6911 2.5154 44 1 8.4404 9.1303 1.0292 45 1 7.9991 7.5501 0.2519 46 1 4.2432 5.4602 -0.1779 47 1 2.8377 3.4580 -0.4078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950644908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:44 Heat of formation + Delta-G solvation = 66.705172 kcal Electronic energy + Delta-G solvation = -29030.884557 eV Core-core repulsion = 25183.205338 eV Total energy + Delta-G solvation = -3847.679218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.88707 -41.01189 -39.15133 -37.68140 -36.59974 -34.97715 -34.29041 -32.23834 -31.21775 -31.12234 -29.33754 -27.67053 -26.85456 -25.29671 -24.10508 -23.90720 -23.41725 -21.77118 -20.83718 -19.89216 -19.32529 -19.15883 -18.24309 -17.52375 -17.12558 -16.82633 -16.40390 -16.28199 -15.88600 -15.81697 -15.62978 -15.33553 -15.17204 -14.79259 -14.46952 -14.31467 -14.15126 -13.81452 -13.59023 -13.46655 -13.37498 -13.14194 -13.01692 -12.64785 -12.52649 -12.38338 -12.21830 -12.09959 -11.89368 -11.80808 -11.68395 -11.33145 -11.10979 -10.77180 -10.44279 -10.22568 -10.10476 -9.43199 -9.21615 -8.75471 -8.37486 -5.13948 0.06527 0.26561 1.13037 1.36520 1.51542 1.65358 1.97930 2.14848 2.31672 2.69352 2.72778 3.18970 3.43317 3.60506 3.69237 3.73432 3.80136 3.95847 4.09311 4.12085 4.19744 4.28077 4.38539 4.38778 4.48644 4.48853 4.54020 4.57392 4.65816 4.71808 4.79206 4.84273 4.92546 4.94810 4.97300 5.05162 5.10397 5.18181 5.18629 5.39210 5.39868 5.49398 5.56619 5.62823 5.70537 5.97150 6.15177 6.34996 6.65776 6.90325 7.60589 7.65367 8.52780 9.14931 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.003408 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.950376 B = 8212.864127 C = 9101.306058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.181 4.181 3 C 0.077 3.923 4 O -0.323 6.323 5 C 0.143 3.857 6 C -0.163 4.163 7 C -0.053 4.053 8 C -0.169 4.169 9 C 0.510 3.490 10 O -0.488 6.488 11 N -0.595 5.595 12 C 0.097 3.903 13 C -0.170 4.170 14 C 0.132 3.868 15 C 0.098 3.902 16 N -0.629 5.629 17 C -0.215 4.215 18 H 0.023 0.977 19 C -0.089 4.089 20 N -0.993 5.993 21 Si 1.110 2.890 22 H -0.303 1.303 23 H -0.244 1.244 24 H -0.314 1.314 25 C 0.092 3.908 26 C -0.053 4.053 27 C -0.202 4.202 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.152 0.848 41 H 0.025 0.975 42 H 0.069 0.931 43 H 0.234 0.766 44 H 0.066 0.934 45 H 0.030 0.970 46 H 0.160 0.840 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.908 0.626 -5.206 31.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.199 4.199 3 C 0.003 3.997 4 O -0.237 6.237 5 C 0.097 3.903 6 C -0.182 4.182 7 C -0.072 4.072 8 C -0.173 4.173 9 C 0.297 3.703 10 O -0.359 6.359 11 N -0.330 5.330 12 C -0.024 4.024 13 C -0.228 4.228 14 C 0.027 3.973 15 C -0.029 4.029 16 N -0.356 5.356 17 C -0.343 4.343 18 H 0.041 0.959 19 C -0.278 4.278 20 N -0.643 5.643 21 Si 0.939 3.061 22 H -0.232 1.232 23 H -0.168 1.168 24 H -0.243 1.243 25 C -0.034 4.034 26 C -0.071 4.071 27 C -0.221 4.221 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.156 0.844 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.170 0.830 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.177 0.823 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -29.360 0.416 -6.500 30.073 hybrid contribution 0.318 -0.959 1.956 2.201 sum -29.041 -0.544 -4.544 29.400 Atomic orbital electron populations 1.24125 0.94827 1.03882 0.96395 1.22684 0.96305 0.97351 1.03560 1.22159 0.87340 0.98100 0.92078 1.86046 1.42754 1.35411 1.59485 1.19169 0.90441 0.86539 0.94113 1.20361 0.96427 0.99310 1.02060 1.20843 0.96947 0.91958 0.97424 1.20017 0.99401 0.95222 1.02650 1.19087 0.88375 0.84213 0.78636 1.91409 1.14172 1.85583 1.44760 1.47574 1.07639 1.05491 1.72260 1.21960 0.77615 1.03505 0.99344 1.22334 1.02892 1.02209 0.95377 1.22515 0.90374 0.89337 0.95110 1.23125 0.88735 0.95999 0.95012 1.45759 1.36631 1.47051 1.06175 1.19373 1.02206 1.14186 0.98538 0.95912 1.26637 0.95615 1.00615 1.04922 1.70999 1.46586 1.19642 1.27038 0.83221 0.73682 0.76215 0.72985 1.23198 1.16834 1.24290 1.23150 0.92684 0.95137 0.92403 1.21637 0.90983 0.99296 0.95181 1.21454 1.04367 0.92696 1.03543 0.86803 0.86236 0.86883 0.89360 0.89912 0.84367 0.87921 0.89737 0.88464 0.93509 0.88653 0.91199 0.83029 0.95627 0.91355 0.95681 0.91637 0.95136 0.82256 0.81373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 14.31 67.78 0.97 -0.32 16 2 C -0.18 -2.24 9.89 25.65 0.25 -1.99 16 3 C 0.08 1.06 5.15 71.23 0.37 1.43 16 4 O -0.32 -7.09 10.11 -90.31 -0.91 -8.00 16 5 C 0.14 3.52 6.70 22.64 0.15 3.67 16 6 C -0.16 -4.81 9.97 22.33 0.22 -4.59 16 7 C -0.05 -1.88 9.72 22.50 0.22 -1.66 16 8 C -0.17 -5.79 4.93 -20.08 -0.10 -5.89 16 9 C 0.51 20.86 6.82 86.72 0.59 21.45 16 10 O -0.49 -26.75 10.40 -3.99 -0.04 -26.79 16 11 N -0.59 -18.38 2.75 -800.30 -2.20 -20.58 16 12 C 0.10 1.81 5.62 86.38 0.49 2.30 16 13 C -0.17 -2.31 9.17 71.98 0.66 -1.65 16 14 C 0.13 4.16 4.88 45.55 0.22 4.38 16 15 C 0.10 3.84 8.26 83.19 0.69 4.53 16 16 N -0.63 -32.76 2.03 -737.94 -1.50 -34.26 16 17 C -0.21 -13.84 8.84 84.03 0.74 -13.10 16 18 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 19 C -0.09 -5.98 5.21 84.86 0.44 -5.53 16 20 N -0.99 -72.14 13.70 21.65 0.30 -71.85 16 21 Si 1.11 61.28 25.51 68.60 1.75 63.03 16 22 H -0.30 -16.70 7.01 99.48 0.70 -16.00 16 23 H -0.24 -11.55 5.49 99.48 0.55 -11.01 16 24 H -0.31 -17.51 7.11 99.48 0.71 -16.80 16 25 C 0.09 3.92 4.51 83.27 0.38 4.29 16 26 C -0.05 -1.29 7.48 22.50 0.17 -1.12 16 27 C -0.20 -4.11 9.01 22.32 0.20 -3.91 16 28 H 0.11 0.62 7.90 -2.91 -0.02 0.59 16 29 H 0.12 0.69 8.06 -2.91 -0.02 0.67 16 30 H 0.11 1.51 8.06 -2.91 -0.02 1.48 16 31 H 0.09 0.85 7.37 -2.38 -0.02 0.83 16 32 H 0.08 0.97 7.65 -2.39 -0.02 0.95 16 33 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.10 4.24 8.06 -2.91 -0.02 4.21 16 35 H 0.08 1.59 5.25 -2.39 -0.01 1.58 16 36 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16 37 H 0.05 0.80 6.36 -2.39 -0.02 0.79 16 38 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.15 3.06 8.10 -2.39 -0.02 3.04 16 41 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.23 17.24 8.73 -92.71 -0.81 16.43 16 44 H 0.07 2.54 6.95 -2.39 -0.02 2.53 16 45 H 0.03 1.47 5.32 -2.39 -0.01 1.46 16 46 H 0.16 3.11 4.18 -2.91 -0.01 3.10 16 47 H 0.17 2.04 6.28 -2.91 -0.02 2.02 16 Total: -1.00 -93.47 369.65 4.81 -88.66 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.76 Total: 7.49 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 6.66 Total: 2.29 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -3.41 Total: -126.69 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.95 Total: -34.79 kcal Atomic # 14 Polarization: 61.28 SS G_CDS: 1.75 Total: 63.03 kcal Total: -93.47 4.81 -88.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950644908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.370 kcal (2) G-P(sol) polarization free energy of solvation -93.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds