Wall clock time and date at job start Tue Mar 31 2020 16:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47527 * 2 1 4 4 C 1.34774 * 119.99927 * 87.57509 * 3 2 1 5 5 O 1.21287 * 120.00293 * 4.38565 * 4 3 2 6 6 C 1.50705 * 119.99832 * 184.39395 * 4 3 2 7 7 H 1.09001 * 109.69261 * 39.97783 * 6 4 3 8 8 C 1.53399 * 109.69086 * 279.42803 * 6 4 3 9 9 O 1.42830 * 108.37888 * 175.62938 * 8 6 4 10 10 C 1.35838 * 117.84894 * 49.27098 * 9 8 6 11 11 C 1.39144 * 118.50155 * 162.76960 * 10 9 8 12 12 C 1.37976 * 120.21341 * 179.31672 * 11 10 9 13 13 C 1.38295 * 119.95731 * 0.23641 * 12 11 10 14 14 C 1.38110 * 119.98536 * 0.09700 * 13 12 11 15 15 C 1.38376 * 121.80347 * 342.78742 * 10 9 8 16 16 C 1.50762 * 121.40337 * 0.78342 * 15 10 9 17 17 C 1.46493 * 119.99844 * 267.57032 * 3 2 1 18 18 C 1.53951 * 113.74031 * 35.24387 * 17 3 2 19 19 N 1.47587 * 86.11649 * 222.04575 * 18 17 3 20 20 C 1.36937 * 134.49221 * 204.64454 * 19 18 17 21 21 H 1.07999 * 119.99478 * 180.02562 * 20 19 18 22 22 C 1.38808 * 119.99982 * 359.97438 * 20 19 18 23 23 N 1.31618 * 120.00126 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99841 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47413 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47410 * 120.00534 * 24 22 20 27 27 H 1.48507 * 109.47323 * 240.00484 * 24 22 20 28 28 C 1.47582 * 91.01212 * 24.63975 * 19 18 17 29 29 H 1.08996 * 109.47315 * 184.62108 * 1 2 3 30 30 H 1.08997 * 109.46913 * 304.62866 * 1 2 3 31 31 H 1.09001 * 109.46421 * 64.62177 * 1 2 3 32 32 H 1.09003 * 109.47088 * 239.99000 * 2 1 3 33 33 H 1.09012 * 109.46556 * 120.00326 * 2 1 3 34 34 H 1.08997 * 109.68546 * 55.90923 * 8 6 4 35 35 H 1.08998 * 109.71522 * 295.36409 * 8 6 4 36 36 H 1.07996 * 119.89722 * 359.58857 * 11 10 9 37 37 H 1.07992 * 120.02201 * 180.21715 * 12 11 10 38 38 H 1.07998 * 120.01089 * 180.12048 * 13 12 11 39 39 H 1.07997 * 119.84129 * 180.02562 * 14 13 12 40 40 H 1.09011 * 109.43245 * 102.36769 * 16 15 10 41 41 H 1.09002 * 109.44136 * 222.22922 * 16 15 10 42 42 H 1.08998 * 112.94533 * 166.97579 * 17 3 2 43 43 H 1.08997 * 113.77052 * 336.34002 * 18 17 3 44 44 H 1.09004 * 113.77064 * 107.74865 * 18 17 3 45 45 H 0.96998 * 120.00050 * 179.97438 * 23 22 20 46 46 H 1.09005 * 113.76705 * 221.06138 * 28 19 18 47 47 H 1.08996 * 113.77249 * 89.66391 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1965 2.0329 1.1661 5 8 2.0291 1.4518 2.2175 6 6 2.6036 3.4840 1.1638 7 1 2.0706 4.0137 0.3742 8 6 4.1158 3.5962 0.9320 9 8 4.4548 4.9801 0.8328 10 6 3.9886 5.8181 1.7950 11 6 4.5847 7.0679 1.9327 12 6 4.1299 7.9524 2.8890 13 6 3.0816 7.5952 3.7172 14 6 2.4922 6.3530 3.5879 15 6 2.9463 5.4599 2.6316 16 6 2.2845 4.1092 2.5280 17 6 2.3133 2.0538 -1.2675 18 6 1.3628 1.6614 -2.4132 19 7 2.5676 1.6209 -3.2647 20 6 2.7991 1.7596 -4.6072 21 1 3.8054 1.6849 -4.9921 22 6 1.7403 1.9952 -5.4733 23 7 0.5139 2.0857 -5.0042 24 14 2.0559 2.1836 -7.3048 25 1 3.5093 2.0402 -7.5740 26 1 1.3099 1.1354 -8.0462 27 1 1.5996 3.5248 -7.7504 28 6 3.4227 1.3711 -2.0880 29 1 -0.3634 -1.0243 0.0828 30 1 -0.3633 0.5840 0.8456 31 1 -0.3632 0.4405 -0.9285 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5140 0.8901 34 1 4.3845 3.0853 0.0074 35 1 4.6505 3.1464 1.7686 36 1 5.4030 7.3482 1.2861 37 1 4.5925 8.9229 2.9908 38 1 2.7237 8.2877 4.4648 39 1 1.6734 6.0766 4.2357 40 1 2.6482 3.4648 3.3286 41 1 1.2047 4.2262 2.6199 42 1 2.4486 3.1296 -1.1563 43 1 0.8884 0.6895 -2.2771 44 1 0.6574 2.4460 -2.6871 45 1 -0.2260 2.2506 -5.6094 46 1 4.3620 1.9241 -2.1022 47 1 3.5534 0.3142 -1.8563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950818217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:19 Heat of formation + Delta-G solvation = 11.970545 kcal Electronic energy + Delta-G solvation = -28985.456259 eV Core-core repulsion = 25135.403570 eV Total energy + Delta-G solvation = -3850.052690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.11699 -39.82675 -37.96288 -37.50925 -34.73672 -34.21471 -32.11144 -31.43978 -30.36814 -29.93016 -27.54523 -25.88660 -25.09098 -24.72870 -23.49344 -22.87019 -22.47968 -20.47983 -19.90155 -18.28523 -17.95551 -17.70510 -16.82866 -16.48325 -15.83116 -15.65658 -15.40742 -14.89762 -14.72476 -14.37678 -14.24470 -13.89315 -13.81274 -13.49642 -13.33530 -13.22444 -13.05015 -12.71024 -12.48618 -12.15690 -11.93107 -11.78432 -11.64943 -11.51220 -11.35296 -11.11035 -10.96917 -10.90473 -10.83635 -10.67641 -10.63794 -10.42952 -10.11185 -9.65461 -9.56106 -8.90428 -8.89650 -8.29891 -8.25399 -7.01311 -5.87705 -3.21050 1.18830 1.31035 2.64434 3.05803 3.24773 3.34060 3.39938 3.41906 3.64123 4.31964 4.42405 4.48425 4.56050 4.73231 4.81656 4.95903 4.99332 5.06373 5.20855 5.27221 5.29489 5.35746 5.39052 5.40356 5.46883 5.55028 5.57828 5.62737 5.70693 5.82754 5.86099 5.87630 5.98209 6.11513 6.15444 6.16563 6.30799 6.34397 6.36878 6.39644 6.51948 6.64722 6.77646 7.05299 7.10808 7.33752 7.40928 7.67393 7.86171 8.29029 8.93576 9.59739 10.44331 11.29337 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.003484 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.886266 B = 8034.214597 C = 9517.427330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.590 5.590 4 C 0.523 3.477 5 O -0.547 6.547 6 C -0.149 4.149 7 H 0.112 0.888 8 C 0.075 3.925 9 O -0.307 6.307 10 C 0.130 3.870 11 C -0.148 4.148 12 C -0.091 4.091 13 C -0.154 4.154 14 C -0.084 4.084 15 C -0.154 4.154 16 C -0.060 4.060 17 C 0.072 3.928 18 C 0.156 3.844 19 N -0.605 5.605 20 C -0.225 4.225 21 H 0.083 0.917 22 C -0.005 4.005 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.107 3.893 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.040 0.960 44 H 0.077 0.923 45 H 0.255 0.745 46 H 0.048 0.952 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.227 5.972 16.525 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.322 5.322 4 C 0.310 3.690 5 O -0.426 6.426 6 C -0.170 4.170 7 H 0.130 0.870 8 C -0.001 4.001 9 O -0.220 6.220 10 C 0.085 3.915 11 C -0.166 4.166 12 C -0.109 4.109 13 C -0.172 4.172 14 C -0.102 4.102 15 C -0.155 4.155 16 C -0.097 4.097 17 C -0.032 4.032 18 C 0.030 3.970 19 N -0.331 5.331 20 C -0.352 4.352 21 H 0.101 0.899 22 C -0.202 4.202 23 N -0.566 5.566 24 Si 0.744 3.256 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.020 4.020 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.168 5.737 16.539 17.995 hybrid contribution -0.170 -0.120 -1.113 1.132 sum 3.998 5.618 15.426 16.897 Atomic orbital electron populations 1.22223 0.95776 1.01911 1.02833 1.21383 0.94581 0.82196 1.02856 1.48199 1.63712 1.14131 1.06117 1.20124 0.77229 0.87908 0.83695 1.90654 1.52294 1.68543 1.31081 1.22097 0.98797 0.95172 1.00940 0.87031 1.22945 0.92626 0.80100 1.04387 1.86069 1.71552 1.18528 1.45862 1.18779 0.92625 0.90959 0.89126 1.20618 1.02082 0.92765 1.01178 1.20914 0.96453 0.98866 0.94713 1.21002 0.98198 0.96932 1.01113 1.20892 0.99235 0.93176 0.96922 1.19875 0.98207 0.97977 0.99472 1.20404 1.01136 0.92105 0.96095 1.24288 1.00301 0.97366 0.81279 1.22719 0.91148 0.99541 0.83570 1.45688 1.02766 1.82999 1.01696 1.19028 0.93627 1.42544 0.79999 0.89944 1.24794 0.95186 1.01935 0.98250 1.69808 0.98162 1.54900 1.33715 0.86028 0.77481 0.77431 0.84689 1.20375 1.21692 1.21582 1.23004 0.94533 0.97378 0.87070 0.92020 0.92759 0.91242 0.89915 0.90473 0.86487 0.91076 0.85185 0.85554 0.85991 0.85793 0.88799 0.89770 0.87096 0.94202 0.90457 0.93541 0.93351 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.96 37.16 0.37 -2.02 16 2 C 0.11 1.64 5.24 -4.04 -0.02 1.62 16 3 N -0.59 -9.03 2.69 -167.89 -0.45 -9.48 16 4 C 0.52 7.88 6.85 -10.98 -0.08 7.80 16 5 O -0.55 -9.40 15.38 5.55 0.09 -9.32 16 6 C -0.15 -1.96 1.90 -91.34 -0.17 -2.13 16 7 H 0.11 1.52 6.67 -51.93 -0.35 1.18 16 8 C 0.08 0.95 6.06 37.36 0.23 1.17 16 9 O -0.31 -4.23 10.27 -19.23 -0.20 -4.43 16 10 C 0.13 1.70 6.47 -39.19 -0.25 1.45 16 11 C -0.15 -1.69 9.94 -39.34 -0.39 -2.08 16 12 C -0.09 -0.88 10.04 -39.66 -0.40 -1.28 16 13 C -0.15 -1.47 10.04 -39.61 -0.40 -1.86 16 14 C -0.08 -0.89 9.67 -39.53 -0.38 -1.27 16 15 C -0.15 -1.89 5.75 -104.44 -0.60 -2.49 16 16 C -0.06 -0.74 4.86 -27.63 -0.13 -0.87 16 17 C 0.07 1.23 3.36 -70.14 -0.24 0.99 16 18 C 0.16 3.36 6.40 -2.97 -0.02 3.34 16 19 N -0.60 -14.45 3.70 -178.06 -0.66 -15.11 16 20 C -0.22 -6.00 10.70 -15.06 -0.16 -6.16 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 23 N -0.92 -26.07 11.38 55.49 0.63 -25.44 16 24 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.11 2.00 8.36 -2.98 -0.02 1.98 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.08 6.20 -51.93 -0.32 0.76 16 32 H 0.08 1.25 6.28 -51.93 -0.33 0.92 16 33 H 0.08 1.11 7.44 -51.92 -0.39 0.72 16 34 H 0.12 1.45 6.96 -51.93 -0.36 1.09 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.09 1.20 7.47 -51.92 -0.39 0.81 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.11 1.84 5.54 -51.93 -0.29 1.55 16 43 H 0.04 0.87 5.09 -51.93 -0.26 0.60 16 44 H 0.08 1.88 7.15 -51.93 -0.37 1.51 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.04 0.69 7.11 -51.93 -0.37 0.32 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -30.64 370.39 -9.57 -40.22 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.77 Total: 3.60 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.77 Total: -2.03 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.48 Total: -50.03 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.11 Total: -13.75 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.64 -9.57 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950818217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.187 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds