Wall clock time and date at job start Tue Mar 31 2020 16:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47527 * 2 1 4 4 C 1.34774 * 119.99927 * 87.57509 * 3 2 1 5 5 O 1.21287 * 120.00293 * 4.38565 * 4 3 2 6 6 C 1.50705 * 119.99832 * 184.39395 * 4 3 2 7 7 H 1.09001 * 109.69261 * 39.97783 * 6 4 3 8 8 C 1.53399 * 109.69086 * 279.42803 * 6 4 3 9 9 O 1.42830 * 108.37888 * 175.62938 * 8 6 4 10 10 C 1.35838 * 117.84894 * 49.27098 * 9 8 6 11 11 C 1.39144 * 118.50155 * 162.76960 * 10 9 8 12 12 C 1.37976 * 120.21341 * 179.31672 * 11 10 9 13 13 C 1.38295 * 119.95731 * 0.23641 * 12 11 10 14 14 C 1.38110 * 119.98536 * 0.09700 * 13 12 11 15 15 C 1.38376 * 121.80347 * 342.78742 * 10 9 8 16 16 C 1.50762 * 121.40337 * 0.78342 * 15 10 9 17 17 C 1.46493 * 119.99844 * 267.57032 * 3 2 1 18 18 C 1.53951 * 113.74031 * 35.24387 * 17 3 2 19 19 N 1.47587 * 86.11649 * 222.04575 * 18 17 3 20 20 C 1.36937 * 134.49221 * 204.64454 * 19 18 17 21 21 H 1.07999 * 119.99478 * 180.02562 * 20 19 18 22 22 C 1.38808 * 119.99982 * 359.97438 * 20 19 18 23 23 N 1.31618 * 120.00126 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99841 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47413 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47410 * 120.00534 * 24 22 20 27 27 H 1.48507 * 109.47323 * 240.00484 * 24 22 20 28 28 C 1.47582 * 91.01212 * 24.63975 * 19 18 17 29 29 H 1.08996 * 109.47315 * 184.62108 * 1 2 3 30 30 H 1.08997 * 109.46913 * 304.62866 * 1 2 3 31 31 H 1.09001 * 109.46421 * 64.62177 * 1 2 3 32 32 H 1.09003 * 109.47088 * 239.99000 * 2 1 3 33 33 H 1.09012 * 109.46556 * 120.00326 * 2 1 3 34 34 H 1.08997 * 109.68546 * 55.90923 * 8 6 4 35 35 H 1.08998 * 109.71522 * 295.36409 * 8 6 4 36 36 H 1.07996 * 119.89722 * 359.58857 * 11 10 9 37 37 H 1.07992 * 120.02201 * 180.21715 * 12 11 10 38 38 H 1.07998 * 120.01089 * 180.12048 * 13 12 11 39 39 H 1.07997 * 119.84129 * 180.02562 * 14 13 12 40 40 H 1.09011 * 109.43245 * 102.36769 * 16 15 10 41 41 H 1.09002 * 109.44136 * 222.22922 * 16 15 10 42 42 H 1.08998 * 112.94533 * 166.97579 * 17 3 2 43 43 H 1.08997 * 113.77052 * 336.34002 * 18 17 3 44 44 H 1.09004 * 113.77064 * 107.74865 * 18 17 3 45 45 H 0.96998 * 120.00050 * 179.97438 * 23 22 20 46 46 H 1.09005 * 113.76705 * 221.06138 * 28 19 18 47 47 H 1.08996 * 113.77249 * 89.66391 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1965 2.0329 1.1661 5 8 2.0291 1.4518 2.2175 6 6 2.6036 3.4840 1.1638 7 1 2.0706 4.0137 0.3742 8 6 4.1158 3.5962 0.9320 9 8 4.4548 4.9801 0.8328 10 6 3.9886 5.8181 1.7950 11 6 4.5847 7.0679 1.9327 12 6 4.1299 7.9524 2.8890 13 6 3.0816 7.5952 3.7172 14 6 2.4922 6.3530 3.5879 15 6 2.9463 5.4599 2.6316 16 6 2.2845 4.1092 2.5280 17 6 2.3133 2.0538 -1.2675 18 6 1.3628 1.6614 -2.4132 19 7 2.5676 1.6209 -3.2647 20 6 2.7991 1.7596 -4.6072 21 1 3.8054 1.6849 -4.9921 22 6 1.7403 1.9952 -5.4733 23 7 0.5139 2.0857 -5.0042 24 14 2.0559 2.1836 -7.3048 25 1 3.5093 2.0402 -7.5740 26 1 1.3099 1.1354 -8.0462 27 1 1.5996 3.5248 -7.7504 28 6 3.4227 1.3711 -2.0880 29 1 -0.3634 -1.0243 0.0828 30 1 -0.3633 0.5840 0.8456 31 1 -0.3632 0.4405 -0.9285 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5140 0.8901 34 1 4.3845 3.0853 0.0074 35 1 4.6505 3.1464 1.7686 36 1 5.4030 7.3482 1.2861 37 1 4.5925 8.9229 2.9908 38 1 2.7237 8.2877 4.4648 39 1 1.6734 6.0766 4.2357 40 1 2.6482 3.4648 3.3286 41 1 1.2047 4.2262 2.6199 42 1 2.4486 3.1296 -1.1563 43 1 0.8884 0.6895 -2.2771 44 1 0.6574 2.4460 -2.6871 45 1 -0.2260 2.2506 -5.6094 46 1 4.3620 1.9241 -2.1022 47 1 3.5534 0.3142 -1.8563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950818217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:19 Heat of formation + Delta-G solvation = -4.656795 kcal Electronic energy + Delta-G solvation = -28986.177275 eV Core-core repulsion = 25135.403570 eV Total energy + Delta-G solvation = -3850.773705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.18399 -41.02362 -39.44775 -38.40128 -36.13153 -35.29884 -33.98962 -32.52646 -31.23570 -31.00770 -29.38794 -26.87146 -26.60876 -25.88694 -25.21809 -23.91758 -23.40161 -21.79507 -21.16516 -19.58091 -19.06687 -18.85211 -18.53007 -17.60455 -17.04917 -16.73239 -16.66602 -16.47578 -15.80845 -15.71032 -15.40281 -15.23936 -14.85914 -14.71495 -14.43658 -14.37864 -14.14876 -13.93719 -13.78960 -13.55629 -13.30773 -13.23957 -12.92674 -12.74568 -12.65404 -12.59552 -12.37851 -12.13170 -12.09437 -11.97054 -11.88047 -11.84748 -11.59994 -11.49488 -10.92934 -10.79163 -9.72639 -9.66441 -9.13373 -8.93783 -7.91779 -5.25168 0.37372 0.47995 1.40743 1.47591 1.48163 1.58110 1.83512 2.26344 2.48784 2.81598 3.20536 3.28624 3.42948 3.50701 3.55271 3.73328 3.81602 3.92512 3.96958 4.14398 4.19673 4.28388 4.34287 4.35548 4.39075 4.41544 4.50703 4.52934 4.61262 4.70606 4.76825 4.84510 4.86144 4.88169 4.94022 4.97521 5.11276 5.20751 5.27929 5.35827 5.38296 5.47981 5.53326 5.58787 5.61362 5.87500 5.90483 6.34134 6.43234 6.90922 7.02870 7.59446 8.51358 9.24973 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.003484 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.886266 B = 8034.214597 C = 9517.427330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.111 3.889 3 N -0.589 5.589 4 C 0.530 3.470 5 O -0.564 6.564 6 C -0.144 4.144 7 H 0.106 0.894 8 C 0.078 3.922 9 O -0.321 6.321 10 C 0.102 3.898 11 C -0.161 4.161 12 C -0.089 4.089 13 C -0.151 4.151 14 C -0.091 4.091 15 C -0.169 4.169 16 C -0.054 4.054 17 C 0.106 3.894 18 C 0.156 3.844 19 N -0.634 5.634 20 C -0.231 4.231 21 H 0.087 0.913 22 C -0.062 4.062 23 N -0.950 5.950 24 Si 0.976 3.024 25 H -0.265 1.265 26 H -0.294 1.294 27 H -0.293 1.293 28 C 0.111 3.889 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.038 0.962 44 H 0.043 0.957 45 H 0.248 0.752 46 H 0.066 0.934 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 6.853 17.873 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.011 4.011 3 N -0.320 5.320 4 C 0.318 3.682 5 O -0.443 6.443 6 C -0.165 4.165 7 H 0.124 0.876 8 C 0.003 3.997 9 O -0.235 6.235 10 C 0.057 3.943 11 C -0.180 4.180 12 C -0.107 4.107 13 C -0.169 4.169 14 C -0.109 4.109 15 C -0.170 4.170 16 C -0.091 4.091 17 C 0.001 3.999 18 C 0.030 3.970 19 N -0.361 5.361 20 C -0.359 4.359 21 H 0.104 0.896 22 C -0.256 4.256 23 N -0.599 5.599 24 Si 0.804 3.196 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.220 1.220 28 C -0.015 4.015 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.154 0.846 37 H 0.173 0.827 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.200 6.611 17.921 19.797 hybrid contribution -0.464 -0.368 -1.416 1.535 sum 4.736 6.244 16.505 18.271 Atomic orbital electron populations 1.22144 0.95388 1.02972 1.01496 1.21453 0.94869 0.81771 1.03034 1.48127 1.63884 1.14427 1.05559 1.20334 0.76423 0.88407 0.83036 1.90649 1.53026 1.69145 1.31500 1.22054 0.99299 0.93642 1.01524 0.87602 1.22924 0.92024 0.80119 1.04677 1.86038 1.71987 1.18824 1.46657 1.19090 0.93721 0.91642 0.89806 1.20884 1.02491 0.92627 1.01989 1.21302 0.96154 0.99598 0.93620 1.21396 0.97519 0.96843 1.01181 1.21188 0.99702 0.93394 0.96638 1.19948 0.98504 0.98207 1.00297 1.20334 1.01360 0.92290 0.95123 1.23712 0.97615 0.97631 0.80946 1.22610 0.90785 0.98361 0.85242 1.45990 1.04838 1.83316 1.01982 1.19387 0.93778 1.41101 0.81639 0.89573 1.25564 0.95154 1.02703 1.02132 1.69984 0.98741 1.56572 1.34566 0.85051 0.77835 0.76675 0.80004 1.18928 1.22156 1.21998 1.23139 0.95032 0.98335 0.84952 0.89974 0.93164 0.93180 0.90248 0.89635 0.86381 0.90463 0.84600 0.82702 0.83147 0.84083 0.89322 0.89441 0.86346 0.94476 0.93897 0.94260 0.91628 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 9.96 71.98 0.72 -3.77 16 2 C 0.11 3.15 5.24 86.38 0.45 3.60 16 3 N -0.59 -17.59 2.69 -803.47 -2.16 -19.75 16 4 C 0.53 15.48 6.85 87.66 0.60 16.08 16 5 O -0.56 -18.75 15.38 -3.05 -0.05 -18.80 16 6 C -0.14 -3.71 1.90 -11.26 -0.02 -3.73 16 7 H 0.11 2.87 6.67 -2.39 -0.02 2.85 16 8 C 0.08 1.92 6.06 72.12 0.44 2.36 16 9 O -0.32 -8.74 10.27 -91.73 -0.94 -9.68 16 10 C 0.10 2.59 6.47 22.52 0.15 2.74 16 11 C -0.16 -3.48 9.94 22.43 0.22 -3.25 16 12 C -0.09 -1.49 10.04 22.22 0.22 -1.26 16 13 C -0.15 -2.44 10.04 22.25 0.22 -2.21 16 14 C -0.09 -1.74 9.67 22.30 0.22 -1.52 16 15 C -0.17 -3.95 5.75 -19.75 -0.11 -4.07 16 16 C -0.05 -1.28 4.86 30.01 0.15 -1.14 16 17 C 0.11 3.57 3.36 46.75 0.16 3.73 16 18 C 0.16 6.86 6.40 86.48 0.55 7.41 16 19 N -0.63 -30.38 3.70 -717.24 -2.65 -33.04 16 20 C -0.23 -12.35 10.70 84.03 0.90 -11.45 16 21 H 0.09 4.42 7.83 -2.91 -0.02 4.39 16 22 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 23 N -0.95 -55.30 11.38 21.65 0.25 -55.06 16 24 Si 0.98 44.50 29.55 68.60 2.03 46.52 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 28 C 0.11 4.04 8.36 86.48 0.72 4.76 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.58 6.20 -2.39 -0.01 1.57 16 32 H 0.08 2.32 6.28 -2.39 -0.01 2.31 16 33 H 0.09 2.33 7.44 -2.38 -0.02 2.31 16 34 H 0.12 2.80 6.96 -2.39 -0.02 2.79 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 40 H 0.09 2.19 7.47 -2.38 -0.02 2.17 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.12 3.89 5.54 -2.39 -0.01 3.87 16 43 H 0.04 1.65 5.09 -2.39 -0.01 1.64 16 44 H 0.04 2.18 7.15 -2.39 -0.02 2.16 16 45 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.05 1.75 7.11 -2.39 -0.02 1.73 16 Total: -1.00 -66.00 370.39 3.50 -62.50 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.98 Total: 22.00 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 6.05 Total: 5.31 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -4.57 Total: -107.84 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.99 Total: -28.48 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.00 3.50 -62.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950818217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.845 kcal (2) G-P(sol) polarization free energy of solvation -65.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds