Wall clock time and date at job start Tue Mar 31 2020 16:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47405 * 2 1 4 4 C 1.34769 * 119.99968 * 84.68651 * 3 2 1 5 5 O 1.21278 * 120.00248 * 3.69666 * 4 3 2 6 6 C 1.50705 * 119.99718 * 183.69555 * 4 3 2 7 7 H 1.08996 * 109.69239 * 305.79904 * 6 4 3 8 8 C 1.53400 * 109.69796 * 66.39508 * 6 4 3 9 9 O 1.42824 * 108.37954 * 184.38983 * 8 6 4 10 10 C 1.35852 * 117.77489 * 310.48788 * 9 8 6 11 11 C 1.39153 * 118.49478 * 196.83026 * 10 9 8 12 12 C 1.37967 * 120.21126 * 180.72412 * 11 10 9 13 13 C 1.38285 * 119.96098 * 0.25618 * 12 11 10 14 14 C 1.38106 * 119.98323 * 359.90454 * 13 12 11 15 15 C 1.38372 * 121.79746 * 17.94401 * 10 9 8 16 16 C 1.50767 * 121.40771 * 358.76048 * 15 10 9 17 17 C 1.46502 * 119.99748 * 264.69499 * 3 2 1 18 18 C 1.53945 * 113.74587 * 31.29679 * 17 3 2 19 19 N 1.47814 * 86.03798 * 222.08812 * 18 17 3 20 20 C 1.36939 * 134.45378 * 204.64722 * 19 18 17 21 21 H 1.08001 * 119.99711 * 179.86572 * 20 19 18 22 22 C 1.38810 * 119.99858 * 359.86051 * 20 19 18 23 23 N 1.31614 * 120.00413 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99532 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47196 * 90.00155 * 24 22 20 26 26 H 1.48500 * 109.46998 * 209.99957 * 24 22 20 27 27 H 1.48498 * 109.47503 * 330.00096 * 24 22 20 28 28 C 1.47584 * 91.04963 * 24.54745 * 19 18 17 29 29 H 1.08996 * 109.46927 * 60.00258 * 1 2 3 30 30 H 1.09005 * 109.47287 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47150 * 300.00321 * 1 2 3 32 32 H 1.08997 * 109.47150 * 239.99679 * 2 1 3 33 33 H 1.08999 * 109.47420 * 119.99637 * 2 1 3 34 34 H 1.08996 * 109.68250 * 304.11353 * 8 6 4 35 35 H 1.09001 * 109.68055 * 64.66607 * 8 6 4 36 36 H 1.07994 * 119.88904 * 1.00292 * 11 10 9 37 37 H 1.07999 * 120.01598 * 180.24157 * 12 11 10 38 38 H 1.08003 * 120.01226 * 179.87301 * 13 12 11 39 39 H 1.08003 * 119.84146 * 180.02562 * 14 13 12 40 40 H 1.08990 * 109.43423 * 138.23260 * 16 15 10 41 41 H 1.08999 * 109.43158 * 258.10263 * 16 15 10 42 42 H 1.08994 * 112.94458 * 162.89221 * 17 3 2 43 43 H 1.09003 * 113.76668 * 336.35013 * 18 17 3 44 44 H 1.08996 * 113.77226 * 107.74284 * 18 17 3 45 45 H 0.97001 * 120.00514 * 179.97438 * 23 22 20 46 46 H 1.09002 * 113.76749 * 221.15556 * 28 19 18 47 47 H 1.08999 * 113.76659 * 89.76014 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1411 2.0525 1.1621 5 8 1.9116 1.4926 2.2131 6 6 2.5637 3.4991 1.1556 7 1 3.4982 3.6063 0.6051 8 6 1.4733 4.3533 0.4963 9 8 1.9448 5.6989 0.4121 10 6 2.4655 6.2587 1.5351 11 6 2.5989 7.6428 1.5863 12 6 3.1372 8.2475 2.7035 13 6 3.5507 7.4766 3.7745 14 6 3.4227 6.1023 3.7257 15 6 2.8822 5.4896 2.6073 16 6 2.7534 3.9875 2.5939 17 6 2.3732 2.0327 -1.2633 18 6 1.5409 1.5496 -2.4650 19 7 2.8129 1.5568 -3.2180 20 6 3.1428 1.6694 -4.5422 21 1 4.1795 1.6469 -4.8442 22 6 2.1448 1.8122 -5.4964 23 7 0.8815 1.8400 -5.1283 24 14 2.5949 1.9650 -7.3029 25 1 2.6442 0.6138 -7.9168 26 1 1.5739 2.7882 -7.9995 27 1 3.9244 2.6146 -7.4287 28 6 3.5841 1.3967 -1.9699 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.2647 3.9741 -0.5040 35 1 0.5658 4.3193 1.0990 36 1 2.2760 8.2459 0.7507 37 1 3.2357 9.3223 2.7415 38 1 3.9740 7.9489 4.6486 39 1 3.7460 5.5024 4.5636 40 1 3.6561 3.5424 3.0121 41 1 1.8926 3.6920 3.1938 42 1 2.4340 3.1177 -1.1795 43 1 1.1144 0.5553 -2.3327 44 1 0.8150 2.2814 -2.8193 45 1 0.1841 1.9402 -5.7950 46 1 4.4865 2.0068 -1.9297 47 1 3.7590 0.3574 -1.6919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950818218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:23 Heat of formation + Delta-G solvation = 15.144284 kcal Electronic energy + Delta-G solvation = -29060.989552 eV Core-core repulsion = 25211.074486 eV Total energy + Delta-G solvation = -3849.915066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14359 -39.81804 -37.93982 -37.51280 -34.74027 -34.23733 -32.12035 -31.47846 -30.34949 -29.90160 -27.55318 -25.92853 -24.95794 -24.76954 -23.48609 -22.86400 -22.50280 -20.54976 -19.80445 -18.42165 -17.93917 -17.64398 -16.83030 -16.42114 -15.93314 -15.67298 -15.19188 -14.92459 -14.80513 -14.50774 -14.05717 -13.95095 -13.77359 -13.53088 -13.43228 -13.19316 -13.04357 -12.71019 -12.42092 -12.14227 -11.91501 -11.69679 -11.62568 -11.55451 -11.34676 -11.16376 -10.95649 -10.90796 -10.76566 -10.71982 -10.60648 -10.43015 -10.13441 -9.65593 -9.56209 -8.90496 -8.89266 -8.29881 -8.25107 -7.01490 -5.87710 -3.20830 1.19292 1.31628 2.65407 3.07070 3.26186 3.34649 3.40048 3.41433 3.64702 4.31050 4.42183 4.46894 4.56607 4.74299 4.82109 4.96479 5.02322 5.07399 5.16974 5.25326 5.31306 5.35899 5.38755 5.41079 5.46299 5.55689 5.59141 5.64213 5.72306 5.83759 5.86152 5.88796 5.98368 6.12020 6.14987 6.17586 6.32091 6.35093 6.38714 6.40006 6.50261 6.65600 6.75982 7.02968 7.08723 7.35660 7.39235 7.66912 7.85716 8.28908 8.93435 9.59782 10.44294 11.29432 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.003535 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.609313 B = 7918.697898 C = 9466.268156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.591 5.591 4 C 0.524 3.476 5 O -0.546 6.546 6 C -0.147 4.147 7 H 0.111 0.889 8 C 0.066 3.934 9 O -0.305 6.305 10 C 0.130 3.870 11 C -0.148 4.148 12 C -0.091 4.091 13 C -0.155 4.155 14 C -0.084 4.084 15 C -0.156 4.156 16 C -0.058 4.058 17 C 0.066 3.934 18 C 0.158 3.842 19 N -0.605 5.605 20 C -0.225 4.225 21 H 0.082 0.918 22 C -0.004 4.004 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.108 3.892 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.040 0.960 44 H 0.078 0.922 45 H 0.255 0.745 46 H 0.048 0.952 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 6.920 16.400 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.323 5.323 4 C 0.311 3.689 5 O -0.425 6.425 6 C -0.169 4.169 7 H 0.129 0.871 8 C -0.009 4.009 9 O -0.219 6.219 10 C 0.085 3.915 11 C -0.166 4.166 12 C -0.109 4.109 13 C -0.173 4.173 14 C -0.102 4.102 15 C -0.156 4.156 16 C -0.095 4.095 17 C -0.038 4.038 18 C 0.032 3.968 19 N -0.332 5.332 20 C -0.353 4.353 21 H 0.100 0.900 22 C -0.201 4.201 23 N -0.566 5.566 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.215 1.215 27 H -0.205 1.205 28 C -0.019 4.019 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.133 0.867 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.725 6.730 16.383 17.795 hybrid contribution 0.268 -0.260 -1.035 1.101 sum 1.993 6.470 15.348 16.775 Atomic orbital electron populations 1.22168 0.95789 1.02079 1.02555 1.21384 0.94526 0.82207 1.02872 1.48200 1.63501 1.14067 1.06521 1.20126 0.77269 0.87852 0.83682 1.90654 1.51191 1.69676 1.30947 1.21984 1.01986 0.93430 0.99486 0.87091 1.23200 0.94851 0.79047 1.03790 1.86107 1.75292 1.28902 1.31552 1.18810 0.94406 0.92102 0.86213 1.20629 1.04432 0.91631 0.99930 1.20912 0.97458 0.99788 0.92783 1.20995 1.03269 0.93762 0.99280 1.20885 0.97806 0.94757 0.96802 1.19888 1.04448 0.95715 0.95597 1.20296 1.04266 0.89956 0.94967 1.24439 0.99603 0.98002 0.81787 1.22720 0.90917 0.98970 0.84170 1.45733 1.01867 1.84702 1.00904 1.18984 0.92732 1.43635 0.79921 0.90024 1.24782 0.95194 1.01984 0.98136 1.69785 0.98404 1.55752 1.32684 0.86100 0.77430 0.77589 0.84512 1.21568 1.21528 1.20521 1.22977 0.94631 0.97571 0.86711 0.91500 0.91931 0.92706 0.89751 0.90660 0.85647 0.91107 0.85144 0.85562 0.86015 0.85816 0.89588 0.89159 0.86730 0.94268 0.90358 0.93471 0.93393 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.96 37.16 0.37 -1.93 16 2 C 0.11 1.64 5.17 -4.04 -0.02 1.62 16 3 N -0.59 -9.02 2.69 -167.90 -0.45 -9.47 16 4 C 0.52 7.89 6.96 -10.99 -0.08 7.81 16 5 O -0.55 -9.40 15.39 5.56 0.09 -9.31 16 6 C -0.15 -1.94 1.89 -91.52 -0.17 -2.12 16 7 H 0.11 1.47 7.68 -51.93 -0.40 1.07 16 8 C 0.07 0.88 5.85 37.36 0.22 1.10 16 9 O -0.31 -4.37 10.27 -19.28 -0.20 -4.57 16 10 C 0.13 1.72 6.47 -39.19 -0.25 1.47 16 11 C -0.15 -1.71 9.94 -39.34 -0.39 -2.10 16 12 C -0.09 -0.89 10.04 -39.66 -0.40 -1.28 16 13 C -0.15 -1.47 10.04 -39.61 -0.40 -1.86 16 14 C -0.08 -0.88 9.67 -39.53 -0.38 -1.26 16 15 C -0.16 -1.90 5.75 -104.44 -0.60 -2.50 16 16 C -0.06 -0.70 4.72 -27.81 -0.13 -0.84 16 17 C 0.07 1.11 3.43 -70.14 -0.24 0.87 16 18 C 0.16 3.36 6.34 -2.84 -0.02 3.34 16 19 N -0.61 -14.47 3.70 -177.86 -0.66 -15.13 16 20 C -0.23 -6.02 10.70 -15.06 -0.16 -6.18 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 23 N -0.92 -25.90 11.39 55.49 0.63 -25.26 16 24 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.11 2.06 8.47 -2.96 -0.03 2.04 16 29 H 0.07 0.99 6.81 -51.93 -0.35 0.64 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.29 6.21 -51.93 -0.32 0.96 16 33 H 0.08 1.09 7.54 -51.93 -0.39 0.70 16 34 H 0.13 1.73 5.47 -51.93 -0.28 1.45 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.15 7.60 -51.93 -0.39 0.76 16 42 H 0.12 1.88 4.47 -51.93 -0.23 1.64 16 43 H 0.04 0.84 5.38 -51.93 -0.28 0.56 16 44 H 0.08 1.86 7.16 -51.93 -0.37 1.49 16 45 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.04 0.70 7.46 -51.93 -0.39 0.31 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -30.45 370.08 -9.58 -40.03 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.77 Total: 3.81 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.78 Total: -2.05 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.48 Total: -49.87 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.11 Total: -13.88 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.45 -9.58 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950818218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.172 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds