Wall clock time and date at job start Tue Mar 31 2020 16:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47405 * 2 1 4 4 C 1.34769 * 119.99968 * 84.68651 * 3 2 1 5 5 O 1.21278 * 120.00248 * 3.69666 * 4 3 2 6 6 C 1.50705 * 119.99718 * 183.69555 * 4 3 2 7 7 H 1.08996 * 109.69239 * 305.79904 * 6 4 3 8 8 C 1.53400 * 109.69796 * 66.39508 * 6 4 3 9 9 O 1.42824 * 108.37954 * 184.38983 * 8 6 4 10 10 C 1.35852 * 117.77489 * 310.48788 * 9 8 6 11 11 C 1.39153 * 118.49478 * 196.83026 * 10 9 8 12 12 C 1.37967 * 120.21126 * 180.72412 * 11 10 9 13 13 C 1.38285 * 119.96098 * 0.25618 * 12 11 10 14 14 C 1.38106 * 119.98323 * 359.90454 * 13 12 11 15 15 C 1.38372 * 121.79746 * 17.94401 * 10 9 8 16 16 C 1.50767 * 121.40771 * 358.76048 * 15 10 9 17 17 C 1.46502 * 119.99748 * 264.69499 * 3 2 1 18 18 C 1.53945 * 113.74587 * 31.29679 * 17 3 2 19 19 N 1.47814 * 86.03798 * 222.08812 * 18 17 3 20 20 C 1.36939 * 134.45378 * 204.64722 * 19 18 17 21 21 H 1.08001 * 119.99711 * 179.86572 * 20 19 18 22 22 C 1.38810 * 119.99858 * 359.86051 * 20 19 18 23 23 N 1.31614 * 120.00413 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99532 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47196 * 90.00155 * 24 22 20 26 26 H 1.48500 * 109.46998 * 209.99957 * 24 22 20 27 27 H 1.48498 * 109.47503 * 330.00096 * 24 22 20 28 28 C 1.47584 * 91.04963 * 24.54745 * 19 18 17 29 29 H 1.08996 * 109.46927 * 60.00258 * 1 2 3 30 30 H 1.09005 * 109.47287 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47150 * 300.00321 * 1 2 3 32 32 H 1.08997 * 109.47150 * 239.99679 * 2 1 3 33 33 H 1.08999 * 109.47420 * 119.99637 * 2 1 3 34 34 H 1.08996 * 109.68250 * 304.11353 * 8 6 4 35 35 H 1.09001 * 109.68055 * 64.66607 * 8 6 4 36 36 H 1.07994 * 119.88904 * 1.00292 * 11 10 9 37 37 H 1.07999 * 120.01598 * 180.24157 * 12 11 10 38 38 H 1.08003 * 120.01226 * 179.87301 * 13 12 11 39 39 H 1.08003 * 119.84146 * 180.02562 * 14 13 12 40 40 H 1.08990 * 109.43423 * 138.23260 * 16 15 10 41 41 H 1.08999 * 109.43158 * 258.10263 * 16 15 10 42 42 H 1.08994 * 112.94458 * 162.89221 * 17 3 2 43 43 H 1.09003 * 113.76668 * 336.35013 * 18 17 3 44 44 H 1.08996 * 113.77226 * 107.74284 * 18 17 3 45 45 H 0.97001 * 120.00514 * 179.97438 * 23 22 20 46 46 H 1.09002 * 113.76749 * 221.15556 * 28 19 18 47 47 H 1.08999 * 113.76659 * 89.76014 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1411 2.0525 1.1621 5 8 1.9116 1.4926 2.2131 6 6 2.5637 3.4991 1.1556 7 1 3.4982 3.6063 0.6051 8 6 1.4733 4.3533 0.4963 9 8 1.9448 5.6989 0.4121 10 6 2.4655 6.2587 1.5351 11 6 2.5989 7.6428 1.5863 12 6 3.1372 8.2475 2.7035 13 6 3.5507 7.4766 3.7745 14 6 3.4227 6.1023 3.7257 15 6 2.8822 5.4896 2.6073 16 6 2.7534 3.9875 2.5939 17 6 2.3732 2.0327 -1.2633 18 6 1.5409 1.5496 -2.4650 19 7 2.8129 1.5568 -3.2180 20 6 3.1428 1.6694 -4.5422 21 1 4.1795 1.6469 -4.8442 22 6 2.1448 1.8122 -5.4964 23 7 0.8815 1.8400 -5.1283 24 14 2.5949 1.9650 -7.3029 25 1 2.6442 0.6138 -7.9168 26 1 1.5739 2.7882 -7.9995 27 1 3.9244 2.6146 -7.4287 28 6 3.5841 1.3967 -1.9699 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.2647 3.9741 -0.5040 35 1 0.5658 4.3193 1.0990 36 1 2.2760 8.2459 0.7507 37 1 3.2357 9.3223 2.7415 38 1 3.9740 7.9489 4.6486 39 1 3.7460 5.5024 4.5636 40 1 3.6561 3.5424 3.0121 41 1 1.8926 3.6920 3.1938 42 1 2.4340 3.1177 -1.1795 43 1 1.1144 0.5553 -2.3327 44 1 0.8150 2.2814 -2.8193 45 1 0.1841 1.9402 -5.7950 46 1 4.4865 2.0068 -1.9297 47 1 3.7590 0.3574 -1.6919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950818218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:23 Heat of formation + Delta-G solvation = -1.259654 kcal Electronic energy + Delta-G solvation = -29061.700880 eV Core-core repulsion = 25211.074486 eV Total energy + Delta-G solvation = -3850.626394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23271 -41.01229 -39.43759 -38.42093 -36.13488 -35.33100 -33.99349 -32.56746 -31.21852 -30.99563 -29.38889 -26.92700 -26.58312 -25.87209 -25.18080 -23.94074 -23.41696 -21.84873 -21.08967 -19.71356 -19.02111 -18.85027 -18.51260 -17.54899 -17.20058 -16.74571 -16.64216 -16.33180 -15.92341 -15.79754 -15.34865 -15.16617 -14.91009 -14.71729 -14.44043 -14.35353 -14.32410 -13.91078 -13.71335 -13.52783 -13.30507 -13.13329 -12.92458 -12.76316 -12.61461 -12.53477 -12.44076 -12.14585 -12.12585 -11.99712 -11.90934 -11.82399 -11.57887 -11.51259 -10.91880 -10.78981 -9.73081 -9.66610 -9.13953 -8.93963 -7.91610 -5.24907 0.37492 0.47764 1.41016 1.48137 1.48829 1.57587 1.83590 2.25324 2.48900 2.81558 3.18332 3.28665 3.41229 3.45625 3.57247 3.70254 3.82983 3.92764 4.01932 4.03228 4.19430 4.29182 4.32126 4.34691 4.39033 4.45307 4.51307 4.53569 4.62197 4.71073 4.76258 4.84042 4.85460 4.88009 4.95082 4.98142 5.11599 5.21600 5.28357 5.34338 5.37080 5.47667 5.53614 5.57690 5.61401 5.87652 5.90131 6.33980 6.42606 6.90909 7.02587 7.59273 8.51183 9.24978 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.003535 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.609313 B = 7918.697898 C = 9466.268156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.111 3.889 3 N -0.590 5.590 4 C 0.529 3.471 5 O -0.563 6.563 6 C -0.141 4.141 7 H 0.113 0.887 8 C 0.070 3.930 9 O -0.322 6.322 10 C 0.100 3.900 11 C -0.162 4.162 12 C -0.089 4.089 13 C -0.150 4.150 14 C -0.090 4.090 15 C -0.168 4.168 16 C -0.051 4.051 17 C 0.100 3.900 18 C 0.160 3.840 19 N -0.634 5.634 20 C -0.234 4.234 21 H 0.085 0.915 22 C -0.060 4.060 23 N -0.948 5.948 24 Si 0.975 3.025 25 H -0.288 1.288 26 H -0.295 1.295 27 H -0.269 1.269 28 C 0.110 3.890 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.037 0.963 44 H 0.048 0.952 45 H 0.249 0.751 46 H 0.061 0.939 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 7.803 18.065 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.011 4.011 3 N -0.321 5.321 4 C 0.318 3.682 5 O -0.442 6.442 6 C -0.162 4.162 7 H 0.131 0.869 8 C -0.005 4.005 9 O -0.236 6.236 10 C 0.055 3.945 11 C -0.181 4.181 12 C -0.106 4.106 13 C -0.168 4.168 14 C -0.107 4.107 15 C -0.169 4.169 16 C -0.088 4.088 17 C -0.005 4.005 18 C 0.034 3.966 19 N -0.362 5.362 20 C -0.362 4.362 21 H 0.102 0.898 22 C -0.253 4.253 23 N -0.597 5.597 24 Si 0.804 3.196 25 H -0.215 1.215 26 H -0.221 1.221 27 H -0.194 1.194 28 C -0.016 4.016 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.151 0.849 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.142 0.858 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.127 7.608 18.086 19.869 hybrid contribution -0.128 -0.504 -1.438 1.529 sum 3.000 7.104 16.648 18.347 Atomic orbital electron populations 1.22091 0.95117 1.03067 1.01547 1.21447 0.95056 0.81758 1.02841 1.48128 1.63627 1.14376 1.05969 1.20340 0.76498 0.88357 0.83024 1.90649 1.51923 1.70257 1.31359 1.21943 1.01856 0.91948 1.00502 0.86899 1.23086 0.95070 0.79144 1.03185 1.86071 1.75872 1.29009 1.32690 1.19125 0.95891 0.92980 0.86455 1.20876 1.05014 0.91203 1.01003 1.21291 0.96081 1.01342 0.91921 1.21401 1.02004 0.93409 1.00015 1.21193 0.97206 0.95659 0.96685 1.19960 1.05288 0.95460 0.96153 1.20234 1.04310 0.90358 0.93890 1.23872 0.97027 0.98234 0.81334 1.22597 0.90125 0.98101 0.85764 1.46035 1.03863 1.84943 1.01313 1.19338 0.92944 1.42415 0.81548 0.89761 1.25545 0.95254 1.02646 1.01881 1.69958 0.99074 1.57280 1.33346 0.85126 0.77306 0.77248 0.79925 1.21531 1.22109 1.19353 1.23116 0.95394 0.98433 0.84690 0.93070 0.90035 0.92966 0.90365 0.89952 0.86691 0.90754 0.84876 0.82741 0.83033 0.83867 0.88807 0.89823 0.85839 0.94564 0.93397 0.94167 0.92056 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 9.96 71.98 0.72 -3.61 16 2 C 0.11 3.17 5.17 86.38 0.45 3.61 16 3 N -0.59 -17.65 2.69 -803.52 -2.17 -19.81 16 4 C 0.53 15.49 6.96 87.66 0.61 16.10 16 5 O -0.56 -18.70 15.39 -3.02 -0.05 -18.75 16 6 C -0.14 -3.63 1.89 -11.38 -0.02 -3.65 16 7 H 0.11 2.88 7.68 -2.39 -0.02 2.86 16 8 C 0.07 1.88 5.85 72.12 0.42 2.30 16 9 O -0.32 -9.32 10.27 -91.89 -0.94 -10.27 16 10 C 0.10 2.60 6.47 22.52 0.15 2.74 16 11 C -0.16 -3.60 9.94 22.43 0.22 -3.38 16 12 C -0.09 -1.49 10.04 22.22 0.22 -1.26 16 13 C -0.15 -2.36 10.04 22.25 0.22 -2.14 16 14 C -0.09 -1.65 9.67 22.30 0.22 -1.44 16 15 C -0.17 -3.89 5.75 -19.75 -0.11 -4.00 16 16 C -0.05 -1.18 4.72 29.89 0.14 -1.04 16 17 C 0.10 3.38 3.43 46.75 0.16 3.54 16 18 C 0.16 6.95 6.34 86.44 0.55 7.50 16 19 N -0.63 -30.54 3.70 -716.63 -2.65 -33.20 16 20 C -0.23 -12.59 10.70 84.03 0.90 -11.69 16 21 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 22 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 23 N -0.95 -54.77 11.39 21.65 0.25 -54.52 16 24 Si 0.98 44.42 29.55 68.60 2.03 46.45 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 C 0.11 4.10 8.47 86.49 0.73 4.83 16 29 H 0.05 1.54 6.81 -2.39 -0.02 1.52 16 30 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 2.34 6.21 -2.39 -0.01 2.33 16 33 H 0.08 2.27 7.54 -2.39 -0.02 2.25 16 34 H 0.12 3.25 5.47 -2.39 -0.01 3.24 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 2.06 7.60 -2.39 -0.02 2.04 16 42 H 0.12 4.04 4.47 -2.39 -0.01 4.03 16 43 H 0.04 1.60 5.38 -2.39 -0.01 1.59 16 44 H 0.05 2.37 7.16 -2.39 -0.02 2.35 16 45 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 46 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.05 1.71 7.46 -2.39 -0.02 1.69 16 Total: -1.00 -65.43 370.08 3.48 -61.94 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.98 Total: 22.54 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 6.04 Total: 5.61 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -4.57 Total: -107.53 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.99 Total: -29.01 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.43 3.48 -61.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950818218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.685 kcal (2) G-P(sol) polarization free energy of solvation -65.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds