Wall clock time and date at job start Tue Mar 31 2020 16:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46930 * 2 1 4 4 C 1.34779 * 119.99734 * 249.88367 * 3 2 1 5 5 O 1.21557 * 119.99589 * 184.14743 * 4 3 2 6 6 C 1.47845 * 120.00046 * 4.14854 * 4 3 2 7 7 C 1.39600 * 120.22701 * 28.64889 * 6 4 3 8 8 C 1.37742 * 119.74599 * 180.11491 * 7 6 4 9 9 C 1.38808 * 120.51213 * 0.02562 * 8 7 6 10 10 C 1.38079 * 119.99324 * 359.76163 * 9 8 7 11 11 C 1.38330 * 120.03127 * 0.05571 * 10 9 8 12 12 C 1.50776 * 121.32942 * 180.58907 * 10 9 8 13 13 C 1.52956 * 109.76905 * 342.67416 * 12 10 9 14 14 O 1.43209 * 108.46368 * 49.32033 * 13 12 10 15 15 C 1.42696 * 113.16250 * 289.31007 * 14 13 12 16 16 C 1.46494 * 120.00086 * 70.16142 * 3 2 1 17 17 C 1.53945 * 113.74202 * 222.84282 * 16 3 2 18 18 N 1.47815 * 86.03843 * 222.08379 * 17 16 3 19 19 C 1.36942 * 134.45570 * 204.64654 * 18 17 16 20 20 H 1.07997 * 119.99225 * 179.86331 * 19 18 17 21 21 C 1.38808 * 120.00156 * 359.86677 * 19 18 17 22 22 N 1.31623 * 119.99842 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00061 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47160 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47206 * 119.99530 * 23 21 19 26 26 H 1.48498 * 109.46999 * 239.99566 * 23 21 19 27 27 C 1.47581 * 91.04935 * 24.54701 * 18 17 16 28 28 H 1.08996 * 109.46844 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46910 * 299.99674 * 1 2 3 30 30 H 1.08997 * 109.46882 * 60.00303 * 1 2 3 31 31 H 1.08997 * 109.47550 * 240.00009 * 2 1 3 32 32 H 1.09004 * 109.47152 * 119.99950 * 2 1 3 33 33 H 1.08004 * 120.12675 * 0.08859 * 7 6 4 34 34 H 1.08006 * 119.74633 * 180.02562 * 8 7 6 35 35 H 1.08001 * 119.91892 * 180.09270 * 11 10 9 36 36 H 1.09008 * 109.41956 * 102.76398 * 12 10 9 37 37 H 1.09001 * 109.42211 * 222.64056 * 12 10 9 38 38 H 1.08992 * 109.63893 * 169.01547 * 13 12 10 39 39 H 1.09006 * 109.63441 * 289.63272 * 13 12 10 40 40 H 1.09003 * 109.33858 * 291.58662 * 15 14 13 41 41 H 1.09001 * 109.33597 * 172.08436 * 15 14 13 42 42 H 1.09005 * 112.94371 * 354.43489 * 16 3 2 43 43 H 1.08997 * 113.77034 * 336.34890 * 17 16 3 44 44 H 1.09000 * 113.76854 * 107.74439 * 17 16 3 45 45 H 0.96999 * 119.99721 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.77318 * 221.14825 * 27 18 17 47 47 H 1.09004 * 113.76367 * 89.75194 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.6214 1.8828 -1.0960 5 8 3.0936 3.0026 -1.0711 6 6 2.7086 1.0709 -2.3286 7 6 1.7338 0.1117 -2.6087 8 6 1.8261 -0.6408 -3.7587 9 6 2.8811 -0.4531 -4.6410 10 6 3.8457 0.4973 -4.3713 11 6 3.7620 1.2618 -3.2215 12 6 4.9972 0.7354 -5.3151 13 6 5.1389 -0.4524 -6.2683 14 8 3.8521 -0.7428 -6.8255 15 6 2.9457 -1.3089 -5.8799 16 6 1.8565 2.2154 1.1934 17 6 1.4018 3.6539 0.8871 18 7 2.3863 4.0729 1.9070 19 6 2.5165 5.1653 2.7225 20 1 3.3521 5.2343 3.4032 21 6 1.5745 6.1837 2.6744 22 7 0.5564 6.0996 1.8444 23 14 1.7525 7.6740 3.7863 24 1 2.9735 7.5275 4.6187 25 1 1.8629 8.9005 2.9563 26 1 0.5623 7.7786 4.6682 27 6 3.1706 2.8408 1.6953 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.9107 -0.0401 -1.9261 34 1 1.0717 -1.3827 -3.9756 35 1 4.5167 2.0057 -3.0130 36 1 4.8122 1.6423 -5.8910 37 1 5.9173 0.8511 -4.7423 38 1 5.8356 -0.1996 -7.0675 39 1 5.5050 -1.3204 -5.7200 40 1 3.2838 -2.3094 -5.6101 41 1 1.9531 -1.3740 -6.3256 42 1 1.2750 1.7286 1.9764 43 1 1.6459 3.9864 -0.1218 44 1 0.3672 3.8560 1.1643 45 1 -0.1017 6.8114 1.8105 46 1 3.5457 2.3950 2.6165 47 1 3.9354 2.9340 0.9242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950856636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:11 Heat of formation + Delta-G solvation = 35.420693 kcal Electronic energy + Delta-G solvation = -28680.067720 eV Core-core repulsion = 24831.031905 eV Total energy + Delta-G solvation = -3849.035815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91407 -39.82811 -37.82402 -36.60153 -35.64077 -33.28238 -32.26480 -31.65256 -30.34966 -29.56433 -27.58358 -26.15714 -24.64864 -24.24925 -23.62726 -23.17995 -22.32931 -21.00102 -20.12004 -18.43362 -17.24781 -16.89351 -16.64486 -16.47442 -16.06820 -15.64834 -15.09338 -14.97900 -14.79540 -14.58985 -14.29690 -13.88803 -13.70139 -13.66814 -13.20463 -13.17137 -12.86578 -12.48000 -12.45989 -12.32479 -12.16733 -11.74054 -11.65687 -11.35903 -11.29443 -11.23829 -10.99189 -10.86945 -10.81473 -10.56438 -10.06764 -10.05122 -9.90631 -9.42236 -9.29685 -8.95519 -8.69845 -8.58347 -8.07191 -6.71085 -5.65791 -2.96420 0.77822 1.16024 2.93547 3.23808 3.45345 3.50203 3.51333 3.52938 3.71041 4.34054 4.36682 4.52407 4.56891 4.59524 4.80515 4.82959 4.89660 4.98925 5.06341 5.14227 5.14962 5.25077 5.33329 5.36748 5.40882 5.49776 5.57517 5.62069 5.63946 5.71329 5.75033 5.80765 5.85550 5.89353 6.07141 6.19211 6.27103 6.28217 6.41926 6.64257 6.66606 6.71853 6.75162 7.00587 7.37559 7.64415 7.68205 7.81670 8.08432 8.57399 9.15530 9.81582 10.73082 11.51670 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.002801 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.554161 B = 9992.857260 C =10764.668765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 N -0.595 5.595 4 C 0.548 3.452 5 O -0.506 6.506 6 C -0.117 4.117 7 C -0.111 4.111 8 C -0.122 4.122 9 C -0.106 4.106 10 C -0.083 4.083 11 C -0.061 4.061 12 C -0.116 4.116 13 C 0.059 3.941 14 O -0.376 6.376 15 C 0.101 3.899 16 C 0.090 3.910 17 C 0.157 3.843 18 N -0.604 5.604 19 C -0.215 4.215 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.111 3.889 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.251 0.749 46 H 0.036 0.964 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -21.479 -14.499 26.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.047 4.047 3 N -0.328 5.328 4 C 0.335 3.665 5 O -0.381 6.381 6 C -0.120 4.120 7 C -0.129 4.129 8 C -0.140 4.140 9 C -0.107 4.107 10 C -0.083 4.083 11 C -0.080 4.080 12 C -0.153 4.153 13 C -0.017 4.017 14 O -0.294 6.294 15 C 0.024 3.976 16 C -0.013 4.013 17 C 0.031 3.969 18 N -0.330 5.330 19 C -0.343 4.343 20 H 0.097 0.903 21 C -0.207 4.207 22 N -0.567 5.567 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.016 4.016 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.719 -20.508 -14.502 25.391 hybrid contribution 0.022 0.870 0.950 1.289 sum 3.741 -19.638 -13.552 24.151 Atomic orbital electron populations 1.22267 0.95757 1.02081 1.03398 1.22256 0.94724 0.83820 1.03868 1.47996 1.57949 1.12779 1.14036 1.18265 0.79000 0.86445 0.82788 1.90871 1.45388 1.18726 1.83162 1.20106 0.97226 0.98217 0.96474 1.22045 0.99341 0.94327 0.97159 1.20910 0.98028 1.00809 0.94215 1.20400 0.95282 0.97684 0.97330 1.19407 0.96730 0.96561 0.95619 1.21174 0.97421 0.97345 0.92066 1.21141 0.96863 1.00313 0.96952 1.22648 0.85351 0.96442 0.97298 1.88068 1.23106 1.82980 1.35264 1.21462 0.94836 0.94305 0.86966 1.24061 0.99753 0.91897 0.85595 1.22711 0.95501 0.85089 0.93584 1.45686 1.25728 1.19438 1.42146 1.19036 1.07429 0.95216 1.12619 0.90286 1.24779 0.97678 0.98534 0.99673 1.69847 1.14050 1.33586 1.39256 0.86047 0.77197 0.82887 0.79659 1.20526 1.21812 1.21811 1.22931 0.94126 0.87587 0.96932 0.91550 0.91252 0.91897 0.88268 0.91130 0.82955 0.85366 0.84783 0.89387 0.89418 0.88179 0.92547 0.91573 0.87576 0.87835 0.92828 0.91571 0.93851 0.94571 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 9.17 37.16 0.34 -1.43 16 2 C 0.08 0.86 5.61 -4.04 -0.02 0.84 16 3 N -0.59 -9.68 2.80 -169.00 -0.47 -10.15 16 4 C 0.55 9.84 6.88 -12.33 -0.08 9.76 16 5 O -0.51 -11.49 12.39 5.32 0.07 -11.42 16 6 C -0.12 -1.67 5.48 -105.02 -0.58 -2.25 16 7 C -0.11 -1.24 7.40 -39.25 -0.29 -1.53 16 8 C -0.12 -1.13 9.65 -39.55 -0.38 -1.51 16 9 C -0.11 -1.06 5.82 -104.47 -0.61 -1.67 16 10 C -0.08 -0.93 5.77 -104.61 -0.60 -1.53 16 11 C -0.06 -0.82 9.22 -39.11 -0.36 -1.18 16 12 C -0.12 -1.01 6.00 -27.87 -0.17 -1.18 16 13 C 0.06 0.45 6.85 37.13 0.25 0.70 16 14 O -0.38 -3.60 10.80 -35.23 -0.38 -3.98 16 15 C 0.10 0.80 6.65 36.01 0.24 1.04 16 16 C 0.09 1.79 4.27 -70.14 -0.30 1.49 16 17 C 0.16 4.03 6.79 -2.84 -0.02 4.01 16 18 N -0.60 -16.74 3.70 -177.86 -0.66 -17.40 16 19 C -0.22 -6.41 10.70 -15.06 -0.16 -6.57 16 20 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.92 -28.68 11.39 55.49 0.63 -28.05 16 23 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 27 C 0.11 2.54 8.27 -2.97 -0.02 2.51 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 30 H 0.06 0.66 6.92 -51.93 -0.36 0.30 16 31 H 0.10 0.98 4.03 -51.93 -0.21 0.77 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.15 1.50 3.16 -52.48 -0.17 1.34 16 34 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 35 H 0.13 1.86 7.90 -52.49 -0.41 1.45 16 36 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 1.89 7.77 -51.93 -0.40 1.49 16 43 H 0.05 1.51 5.69 -51.93 -0.30 1.22 16 44 H 0.07 1.83 7.17 -51.93 -0.37 1.46 16 45 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 1.18 6.32 -51.93 -0.33 0.85 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -36.46 366.01 -9.90 -46.36 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.72 Total: -0.09 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.86 Total: 1.09 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.50 Total: -55.59 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.31 Total: -15.40 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.46 -9.90 -46.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950856636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.783 kcal (2) G-P(sol) polarization free energy of solvation -36.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds